These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1819 fasta sequence [GGTGTGGGCTCGTCTCGGCTCGCAGGAACTCGTCGCCCTCCTCGACTCCGGCTCAACACACAACTTCATCAACGATGCCATCGCGCACCAGGCTGGCGTCCCTCTACAGCGCCGCCCCGGCCTCAGCGTAGCCGTGGCCAATGGAGATCGCGTGCCGTCGCCAGGCAGGTGCCCGCCACAGCGCGTCTCCATCGGCTCGCACGAGTTCGACATCGACTTCTATGCACTCCCGCTTGGCGGCTACGACATTGTGCTAGGTGCACAGTGGCTCGGCACCCTCGGACCGACGCTATGGGATTTTTCTCGACAATCCCTCGCCTTCGGACCCGCCCACGACCGCGTCACGTGGACAAGTATCGACGCTGCACCGGCGCCCGCCCATGCTGCCGCCATCGACGGTCAGCCGGGCGACCTCATGACCGATCTGCTCGACGTCTTCAAAGACCTCTTCACCGAGCCGCACGGACTATCGCCAGAACGCCATCTCTGCCACCGCATACGACTGGAGGCAGGGGTATCGGCTGTTGCGGTGGGCCCGTATCGGTACGCGCACATCCAGAAAGATGAGCTCGAGCGACAGTGCGACGATATGCTCCGCCACGGCGTCATCCGACCCAGCTCGTCGGCATTCTCGTCCCCGGCTTTGCTGATCAAGAAGCGCGACGGCTCCTGGCGCTTCTGCGTCGACTACCGCGCCCTCAACGACAAGACCATCAAGGATAAGTTCCCGATCCCGGTCGCCGAGGAACTCTTCGACGAGCTGCGCGGCGCCAAATTCTTCACCAAGTTGGATATGCGTTCCGGCTACCACCAAGTGCTGATGCATCCGGACGACGTGCACAAGACGGCGTTCCGCACCCACCAAGGCCTCTTTGAGTTCTTGGTGATGCCCTTCGGACTCACGAACGCGCCGGCGACATTCCAAGCCTTGATGAACGACGTGCTGCTTCCGTTCCTCCGCCGGTTCGTGCTCGTCTTCTTCGATGATATTCTAATATACAGCTCGTCTTGGTCGGAGCACCTCCGCCATGTACGCACGGTGTTGCAAACGCTGCAGGATCATTGCCTCCACCTCAAGCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCCTCTCCAGTCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGGGCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCACGCCCATCGCCCCCCGTCACGCCAAGCTAGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGTGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCGCAGCATCATTGGGCGAGCAAGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTGGCGGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCAGCCCTGGCAAGCCTTCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTATTCAAGGATCGGGTGTTTATCCCGGAGTCCTTTTCTCATATATTTTGGTACACTTCTGTTATGATCTGGAACTGAGCAACTGATATTTGTGTGGGTCGGTGACAGCAACTGTGTCTGGAATCTGGATGTTTTTTCAAGGC] [+] EMBL AK099804 [GGTGTGGGCTCGTCTCGGCTCGCAGGAACTCGTCGCCCTCCTCGACTCCGGCTCAACACACAACTTCATCAACGATGCCATCGCGCACCAGGCTGGCGTCCCTCTACAGCGCCGCCCCGGCCTCAGCGTAGCCGTGGCCAATGGAGATCGCGTGCCGTCGCCAGGCAGGTGCCCGCCACAGCGCGTCTCCATCGGCTCGCACGAGTTCGACATCGACTTCTATGCACTCCCGCTTGGCGGCTACGACATTGTGCTAGGTGCACAGTGGCTCGGCACCCTCGGACCGACGCTATGGGATTTTTCTCGACAATCCCTCGCCTTCGGACCCGCCCACGACCGCGTCACGTGGACAAGTATCGACGCTGCACCGGCGCCCGCCCATGCTGCCGCCATCGACGGTCAGCCGGGCGACCTCATGACCGATCTGCTCGACGTCTTCAAAGACCTCTTCACCGAGCCGCACGGACTATCGCCAGAACGCCATCTCTGCCACCGCATACGACTGGAGGCAGGGGTATCGGCTGTTGCGGTGGGCCCGTATCGGTACGCGCACATCCAGAAAGATGAGCTCGAGCGACAGTGCGACGATATGCTCCGCCACGGCGTCATCCGACCCAGCTCGTCGGCATTCTCGTCCCCGGCTTTGCTGATCAAGAAGCGCGACGGCTCCTGGCGCTTCTGCGTCGACTACCGCGCCCTCAACGACAAGACCATCAAGGATAAGTTCCCGATCCCGGTCGCCGAGGAACTCTTCGACGAGCTGCGCGGCGCCAAATTCTTCACCAAGTTGGATATGCGTTCCGGCTACCACCAAGTGCTGATGCATCCGGACGACGTGCACAAGACGGCGTTCCGCACCCACCAAGGCCTCTTTGAGTTCTTGGTGATGCCCTTCGGACTCACGAACGCGCCGGCGACATTCCAAGCCTTGATGAACGACGTGCTGCTTCCGTTCCTCCGCCGGTTCGTGCTCGTCTTCTTCGATGATATTCTAATATACAGCTCGTCTTGGTCGGAGCACCTCCGCCATGTACGCACGGTGTTGCAAACGCTGCAGGATCATTGCCTCCACCTCAAGCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCCTCTCCAGTCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGGGCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCACGCCCATCGCCCCCCGTCACGCCAAGCTAGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGGTCCGTCACTGGTGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATAGCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCGCAGCATCATTGGGCGAGCAAGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCGACGCCCTATCTCGCCGCGACGAACACTTGGCGGAAGCGTTTGTTCTATCGGCGCCGCACTTCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCAGCCCTGGCAAGCCTTCGCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCGTATTCAAGGATCGGGTGTTTATCCCGGAGTCCTTTTCTCATATATTTTGGTACACTTCTGTTATGATCTGGAACTGAGCAACTGATATTTGTGTGGGTCGGTGACAGCAACTGTGTCTGGAATCTGGATGTTTTTTCAAGGC] consensusID : consensus_3339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence [GGGGCAAGCTACATTCTCAGCTACTCAGCTTGGAACATAGTAGAAAAATTCATATGAAAACAGATTGGATCTCATCTCTAGCAAAGGATAAAACCTAAACTCTGTACAACTGGAGCTAGAAAGTGCATGTCTCCTCCAAGAAAAAAAAATGAAATGGTGTACCAAACAGAACAGACACTCGAGTCCATCAAGTCACGCGTGTTCATAACACGTAGTACTGTTCTATTTACCATAGCTCTGCAGGTCCATTCACATGTGAGCAAGATAGAGTGATAAACACACAAAAGCTACTAGACATGTGTCACAGTCCAAAATCAAAGCCAAGCCAAACCAAGCCAACATATATTGGCAGGCAAATCAAGTAATCAGCGGCCAGAAACAGTGTAAGTTGCTTACAGGAGAGCAGGCACAGGCTGCCCCAGAGCCTCGTGCCCCGGCTGCTCATCAGTGTGCTACTGTTTGGAGATCACAGGTAGCACATCCCTTTCCATGGCGATTAACGTATACCACACTGAACCAGCAGATTGCGACCATTTGGCAGCCAGCCACTGCTTGCAACCATTTTGTCAAGGTCCAGTGATTCACACATCAATGTGTATCATAATAAAGATCCTAACGTGTCACCAACCCAGCCTTGNAAAAACATNCAGATTNCAGACACAGGTTGCTGTCACCGACCCACACAAATGTCAGNTGCTCAGTTNCAGATCATAACAGGAAGTGTACCAAAATATATGAGAAAAGGACTCTTATAAGNATGATGNCACATATACCTGGCAACTNCGAAATNAAGCATCA] [+] EMBL CA766827 [GGGGCAAGCTACATTCTCAGCTACTCAGCTTGGAACATAGTAGAAAAATTCATATGAAAACAGATTGGATCTCATCTCTAGCAAAGGATAAAACCTAAACTCTGTACAACTGGAGCTAGAAAGTGCATGTCTCCTCCAAGAAAAAAAAATGAAATGGTGTACCAAACAGAACAGACACTCGAGTCCATCAAGTCACGCGTGTTCATAACACGTAGTACTGTTCTATTTACCATAGCTCTGCAGGTCCATTCACATGTGAGCAAGATAGAGTGATAAACACACAAAAGCTACTAGACATGTGTCACAGTCCAAAATCAAAGCCAAGCCAAACCAAGCCAACATATATTGGCAGGCAAATCAAGTAATCAGCGGCCAGAAACAGTGTAAGTTGCTTACAGGAGAGCAGGCACAGGCTGCCCCAGAGCCTCGTGCCCCGGCTGCTCATCAGTGTGCTACTGTTTGGAGATCACAGGTAGCACATCCCTTTCCATGGCGATTAACGTATACCACACTGAACCAGCAGATTGCGACCATTTGGCAGCCAGCCACTGCTTGCAACCATTTTGTCAAGGTCCAGTGATTCACACATCAATGTGTATCATAATAAAGATCCTAACGTGTCACCAACCCAGCCTTGNAAAAACATNCAGATTNCAGACACAGGTTGCTGTCACCGACCCACACAAATGTCAGNTGCTCAGTTNCAGATCATAACAGGAAGTGTACCAAAATATATGAGAAAAGGACTCTTATAAGNATGATGNCACATATACCTGGCAACTNCGAAATNAAGCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3339#0 GGTGTGGGCTCGTCTCGGCTCGCAGGAACTCGTCGCCCTCCTCGACTCCGGCTCAACACA 60 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 CAACTTCATCAACGATGCCATCGCGCACCAGGCTGGCGTCCCTCTACAGCGCCGCCCCGG 120 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 CCTCAGCGTAGCCGTGGCCAATGGAGATCGCGTGCCGTCGCCAGGCAGGTGCCCGCCACA 180 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 GCGCGTCTCCATCGGCTCGCACGAGTTCGACATCGACTTCTATGCACTCCCGCTTGGCGG 240 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 CTACGACATTGTGCTAGGTGCACAGTGGCTCGGCACCCTCGGACCGACGCTATGGGATTT 300 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 TTCTCGACAATCCCTCGCCTTCGGACCCGCCCACGACCGCGTCACGTGGACAAGTATCGA 360 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 CGCTGCACCGGCGCCCGCCCATGCTGCCGCCATCGACGGTCAGCCGGGCGACCTCATGAC 420 consensus_3339#1 --------------------------------------------GGGGCAAGCTACATTC 16 **** * ** * consensus_3339#0 CGATCTGCTCGACGTCTTCAAAGACCTCTTCACCGAGCCGCACGGACTATCGCCAGAACG 480 consensus_3339#1 TCAGCTACTCAGC----TTGGAACATAGTAGAAAAATTCATATGAAA-ACAGATTGGATC 71 * ** *** * * * * * * * * * * * * * * consensus_3339#0 CCATCTCTGCCACCGCATACGACTGGAGGCAGGGGTATCGGCTGTTGCGGTGGGCCCGTA 540 consensus_3339#1 TCATCTCTAGCAAAGGATAAAACCTAAACTCTGTACAACTGGAGCTAGAAAGTGCATGTC 131 ******* ** * *** ** * * * * * * * * ** ** consensus_3339#0 TCGGTACGCGCACATCCAGAAAGATGAGCTCGAGCGACAGTGCGACGATATGCTCCGCCA 600 consensus_3339#1 TC------CTCCAAGAAAAAAAAATGAAATGGTGTACCAAACAGAACAGACACTC----- 180 ** * * * * *** **** * * * ** ** * * *** consensus_3339#0 CGGCGTCATCCGACCCAGCTCGTCGGCATTCTCGTCCCCGGCTTTGCTGATCAAGAAGCG 660 consensus_3339#1 -GAGTCCATCAAGTCACGCGTGTTCATAACACGTAGTACTGTTCTATTTACCA--TAGCT 237 * **** * ** ** * * * * * * * ** *** consensus_3339#0 CGACGGCTCCTGGCGCTTCTGCGTCGACTACCGCGCCCTCAACGACAAGACCATCAAGGA 720 consensus_3339#1 CTGCAGGTCCATTCACATGTGAGCAAGATAGAGTGATAAACACACAAAAGCTACTAGACA 297 * * * *** * * * ** * ** * * ** ** * * * * consensus_3339#0 TAAGTTCCCGATCCCGGTCGCCGAGGAACTCTTCGACGAGCTGCGCGGCGCCAAATTCTT 780 consensus_3339#1 TGTGT-------CACAGTCCAAAATCAAAGCCAAGCCAAACCAAGCCAACATATATTGGC 350 * ** * * *** * ** * * * * * ** * *** consensus_3339#0 CACCAAGTTGGATATGCGTTCCGGCTACCACCAAGTGCTGATGCATCCGGACGA-CGTGC 839 consensus_3339#1 AGGCAAATCAAGTAATCA--GCGGCCAGAAACAGTGTAAGTTGCTTACAGGAGAGCAGGC 408 *** * ** * **** * * ** * *** * * * ** * ** consensus_3339#0 ACAAGACGGCGTTCCGCACCCACCAAGGCCTCTTTGAGTTCTTGGTGATGCCCTTCGGAC 899 consensus_3339#1 ACAGGC---TGCCCCAGAGCCTC--GTGCCCC---GGCTGCTCATCAGTGTGCTACTGTT 460 *** * * ** * ** * *** * * * ** ** ** * * consensus_3339#0 TCACGAACGCGCCGGCGACATTCCAAGCCTTGATGAACGACGTGCTGCTTCCGTTCCTCC 959 consensus_3339#1 TGGAGATCACAGGTAGCACATCCCTTTCCATGGCGATTAACGTATACC--ACACTGAACC 518 * ** * * **** ** ** ** ** **** * * * ** consensus_3339#0 GCCGGTTCGTGCTCGTCTTCTTCGATGATATT-CTAATATACAGCTCGTCTTGGTCGGAG 1018 consensus_3339#1 AGCAGATTGCGACCATTTGGCAGCCAGCCACTGCTTGCAACCATTTTGTCAAGGTCCAGT 578 * * * * * * * * * * * ** * ** * *** **** consensus_3339#0 CACCTCCGCCATG-TACGCACGGTGTTGCAAACGCTGCAGGATCATTGCCTCCACCTCAA 1077 consensus_3339#1 GATTCACACATCAATGTGTATCATAATAAAGATCCTAACGTGTCACCAACCCAGCCTTGN 638 * * * * * * * * * * ** * *** * * *** consensus_3339#0 GCGCTCCAAGTGTGAGTTCGGCCTCACCTCCGTCGCATACCTGGGGCATGTCCTCTCCAG 1137 consensus_3339#1 AAAAAC--ATNCAGATTNCAGACACAGGTTGCTGTCA---CCGACCCACACAAATGTCAG 693 * * ** * * * * ** * * ** * * ** *** consensus_3339#0 TCCTTCAACTTCCGGATTTCAACCGCGACTTCATCGTCGAATGCGACGCGTCGGGTACGG 1197 consensus_3339#1 NTGCTCAG-TTNCAGATCATAACAGGAAGTGTACCAAAATATATGA---GAAAAGGACTC 749 *** ** * *** *** * * * * * ** ** * * ** consensus_3339#0 GCCTTGGCGCCGTGCTCCACCAGGGCGGCGGTCCAGTCGCGTTCTTCAGCACGCCCATCG 1257 consensus_3339#1 TTATAAGNATGATGNCACATATACCTGGCAACTNCG--AAATNAAGCATCA--------- 798 * * ** ** *** * * ** ** consensus_3339#0 CCCCCCGTCACGCCAAGCTAGCCGCCTACGAGCGCGAATTGATCGGCCTCGTCAAGGCGG 1317 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 TCCGTCACTGGTGACCGTACCTCTGGGGCCGCCGCTTCATCATTCGCACGGACCATTATA 1377 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 GCTTGCGGTTCCTGCTCGACCAACGCCTCTCGACCATTCCGCAGCATCATTGGGCGAGCA 1437 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 AGCTGCTGGGATTCGATTTTGCCGTCGAGTACAAGCCTGGAACGGCCAATGTCGTCGCCG 1497 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 ACGCCCTATCTCGCCGCGACGAACACTTGGCGGAAGCGTTTGTTCTATCGGCGCCGCACT 1557 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 TCTCGCTGCTCGACGACGTTCGCCGCGAGGTTGCCTCTACTCCAGCCCTGGCAAGCCTTC 1617 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 GCGACGACATCATTCGCGGCGCTAAACCCCCGCCGTGGGCATTCAAAGATGGACTGATCG 1677 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 TATTCAAGGATCGGGTGTTTATCCCGGAGTCCTTTTCTCATATATTTTGGTACACTTCTG 1737 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 TTATGATCTGGAACTGAGCAACTGATATTTGTGTGGGTCGGTGACAGCAACTGTGTCTGG 1797 consensus_3339#1 ------------------------------------------------------------ consensus_3339#0 AATCTGGATGTTTTTTCAAGGC 1819 consensus_3339#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||