cluster # 3349

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Oryza sativa
cluster # 3349 cluster # 3349 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3349#0 length = 807 sequences # 1

consensus_3349#1 length = 289 sequences # 1

consensusID : consensus_3349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence

                              [CTTTTTTTTTACATCAAACAATTTATATTTCCTTTTCAGTACATGTTAGATGAACACATGCCTACATACATACATCTTGGAGGCTAAACCTATCACCTTAGTGCTAAATGAATTTACTCGTATACACACCAAAGAGGCGAAAAACAACAGAAAAAAAAAAGAAATTTCTATAAAGGAGAATTTTCTATAGCTATCTCCTTGGGTCATGCAGACGTGTCATTGGAACTTCTGAACGGTTCACCTGATTTACATTCTCGAATTTTTCTATCTCTCGGGCAACTTGAATATCACTGGGGGTAAAATACTCTGTAAAGGCCTTGATTACAAAATGTGGTACCATTGCTGCAACAACAATGATAAGCAGCAGTAACCAAAACAAACCTGTCCCCATTATATGAAAGATGGCCCCATATCCAGGAAGAAACCAAATGGAGTCGATCACAAAGAGGCAAATGGTTGTTGCTGCTATTGTTCCCCACACAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCATGGCTAGTAGCATATTTACAACAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAGACATATCTATCGTACTTTGTCTATATGCAAAATATGGCATGTAGAAAACAACCAGACTTTGCCATAGCGCTTCGAGCATATTGAGGACAAACAAATTTACATTATACTTCTCATCCCTTTGGCCAGATCCATATAGCTTTGGATAAGCTAGTAGTGTTTCCTTACTAAGATCCTTGTCAAGAATACCAACAACAATTGTTGGAAGGGATGTATATAGCACAGTATACA]

[+] EMBL CB634987             [CTTTTTTTTTACATCAAACAATTTATATTTCCTTTTCAGTACATGTTAGATGAACACATGCCTACATACATACATCTTGGAGGCTAAACCTATCACCTTAGTGCTAAATGAATTTACTCGTATACACACCAAAGAGGCGAAAAACAACAGAAAAAAAAAAGAAATTTCTATAAAGGAGAATTTTCTATAGCTATCTCCTTGGGTCATGCAGACGTGTCATTGGAACTTCTGAACGGTTCACCTGATTTACATTCTCGAATTTTTCTATCTCTCGGGCAACTTGAATATCACTGGGGGTAAAATACTCTGTAAAGGCCTTGATTACAAAATGTGGTACCATTGCTGCAACAACAATGATAAGCAGCAGTAACCAAAACAAACCTGTCCCCATTATATGAAAGATGGCCCCATATCCAGGAAGAAACCAAATGGAGTCGATCACAAAGAGGCAAATGGTTGTTGCTGCTATTGTTCCCCACACAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCATGGCTAGTAGCATATTTACAACAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAGACATATCTATCGTACTTTGTCTATATGCAAAATATGGCATGTAGAAAACAACCAGACTTTGCCATAGCGCTTCGAGCATATTGAGGACAAACAAATTTACATTATACTTCTCATCCCTTTGGCCAGATCCATATAGCTTTGGATAAGCTAGTAGTGTTTCCTTACTAAGATCCTTGTCAAGAATACCAACAACAATTGTTGGAAGGGATGTATATAGCACAGTATACA]




>consensus_3349#0
CTTTTTTTTTACATCAAACAATTTATATTTCCTTTTCAGTACATGTTAGATGAACACATG
CCTACATACATACATCTTGGAGGCTAAACCTATCACCTTAGTGCTAAATGAATTTACTCG
TATACACACCAAAGAGGCGAAAAACAACAGAAAAAAAAAAGAAATTTCTATAAAGGAGAA
TTTTCTATAGCTATCTCCTTGGGTCATGCAGACGTGTCATTGGAACTTCTGAACGGTTCA
CCTGATTTACATTCTCGAATTTTTCTATCTCTCGGGCAACTTGAATATCACTGGGGGTAA
AATACTCTGTAAAGGCCTTGATTACAAAATGTGGTACCATTGCTGCAACAACAATGATAA
GCAGCAGTAACCAAAACAAACCTGTCCCCATTATATGAAAGATGGCCCCATATCCAGGAA
GAAACCAAATGGAGTCGATCACAAAGAGGCAAATGGTTGTTGCTGCTATTGTTCCCCACA
CAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCATGGCTAGTAGCATATTTACAA
CAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAGACATATCTATCGTACTTTGTC
TATATGCAAAATATGGCATGTAGAAAACAACCAGACTTTGCCATAGCGCTTCGAGCATAT
TGAGGACAAACAAATTTACATTATACTTCTCATCCCTTTGGCCAGATCCATATAGCTTTG
GATAAGCTAGTAGTGTTTCCTTACTAAGATCCTTGTCAAGAATACCAACAACAATTGTTG
GAAGGGATGTATATAGCACAGTATACA

consensusID : consensus_3349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [CAANATCCCNGGGAAGAAACCCAAAATGGAGTCGGATCCCCAAANNGGCAAAATGGTTGTTGCTGCTATTGTTCCCCCACCCAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCATGGCTAGTAGCATATTTACANCAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAGACATATCTATCGTACTTTGTCTATATGCAAAATATGGCATGTAGAAAACAACCAGACTTTGCCATAGCGCTTCGAGCATATTGAGGACAAACAAATTTACATTATACTT]

[-] EMBL CA766889             [CAANATCCCNGGGAAGAAACCCAAAATGGAGTCGGATCCCCAAANNGGCAAAATGGTTGTTGCTGCTATTGTTCCCCCACCCAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCATGGCTAGTAGCATATTTACANCAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAGACATATCTATCGTACTTTGTCTATATGCAAAATATGGCATGTAGAAAACAACCAGACTTTGCCATAGCGCTTCGAGCATATTGAGGACAAACAAATTTACATTATACTT]




>consensus_3349#1
CAANATCCCNGGGAAGAAACCCAAAATGGAGTCGGATCCCCAAANNGGCAAAATGGTTGT
TGCTGCTATTGTTCCCCCACCCAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCA
TGGCTAGTAGCATATTTACANCAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAG
ACATATCTATCGTACTTTGTCTATATGCAAAATATGGCATGTAGAAAACAACCAGACTTT
GCCATAGCGCTTCGAGCATATTGAGGACAAACAAATTTACATTATACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3349#0      CTTTTTTTTTACATCAAACAATTTATATTTCCTTTTCAGTACATGTTAGATGAACACATG 60
consensus_3349#1      ------------------------------------------------------------
                                                                                  

consensus_3349#0      CCTACATACATACATCTTGGAGGCTAAACCTATCACCTTAGTGCTAAATGAATTTACTCG 120
consensus_3349#1      ------------------------------------------------------------
                                                                                  

consensus_3349#0      TATACACACCAAAGAGGCGAAAAACAACAGAAAAAAAAAAGAAATTTCTATAAAGGAGAA 180
consensus_3349#1      ------------------------------------------------------------
                                                                                  

consensus_3349#0      TTTTCTATAGCTATCTCCTTGGGTCATGCAGACGTGTCATTGGAACTTCTGAACGGTTCA 240
consensus_3349#1      ------------------------------------------------------------
                                                                                  

consensus_3349#0      CCTGATTTACATTCTCGAATTTTTCTATCTCTCGGGCAACTTGAATATCACTGGGGGTAA 300
consensus_3349#1      ------------------------------------------------------------
                                                                                  

consensus_3349#0      AATACTCTGTAAAGGCCTTGATTACAAAATGTGGTACCATTGCTGCAACAACAATGATAA 360
consensus_3349#1      ------------------------------------------------------------
                                                                                  

consensus_3349#0      GCAGCAGTAACCAAAACAAACCTGTCCCCATTATATGAAAGATGGCCCCATATCCAGGAA 420
consensus_3349#1      ---------------------------------------------CAANATCCCNGGGAA 15
                                                                   *   **  *  ****

consensus_3349#0      GAAACC--AAATGGAGTCGA--TCACAAAGAGGCAAA-TGGTTGTTGCTGCTATTGTTCC 475
consensus_3349#1      GAAACCCAAAATGGAGTCGGATCCCCAAANNGGCAAAATGGTTGTTGCTGCTATTGTTCC 75
                      ******  ***********    * ****  ****** **********************

consensus_3349#0      CC-ACACAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCATGGCTAGTAGCATAT 534
consensus_3349#1      CCCACCCAAAAGCATGTACGATCCAATTCCACCGAAAGATGTCCATGGCTAGTAGCATAT 135
                      ** ** ******************************************************

consensus_3349#0      TTACAACAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAGACATATCTATCGTAC 594
consensus_3349#1      TTACANCAATGACAGGGGCAAGTGCCCATAGATCTCCCAGACTAGACATATCTATCGTAC 195
                      ***** ******************************************************

consensus_3349#0      TTTGTCTATATGCAAAATATGGCATGTAGAAAACAACCAGACTTTGCCATAGCGCTTCGA 654
consensus_3349#1      TTTGTCTATATGCAAAATATGGCATGTAGAAAACAACCAGACTTTGCCATAGCGCTTCGA 255
                      ************************************************************

consensus_3349#0      GCATATTGAGGACAAACAAATTTACATTATACTTCTCATCCCTTTGGCCAGATCCATATA 714
consensus_3349#1      GCATATTGAGGACAAACAAATTTACATTATACTT-------------------------- 289
                      **********************************                          

consensus_3349#0      GCTTTGGATAAGCTAGTAGTGTTTCCTTACTAAGATCCTTGTCAAGAATACCAACAACAA 774
consensus_3349#1      ------------------------------------------------------------
                                                                                  

consensus_3349#0      TTGTTGGAAGGGATGTATATAGCACAGTATACA 807
consensus_3349#1      ---------------------------------