cluster # 3353

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Oryza sativa
cluster # 3353 cluster # 3353 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3353#0 length = 451 sequences # 1

consensus_3353#1 length = 389 sequences # 1

consensusID : consensus_3353#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TTTTTTTTTTGACATAAATAGCCCACCCGTCTTTATACATTTTGTAGAACGCTGTCAATTGCAAACATCAGGATTCAGGATACCAGCAATGAATTTGGCACACGATTCCATTCTCATTTCTCAACAATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGTGTTATAGCATGATGCGATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACTCCATGTATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTCTTCCGTAGGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCGTCTTCCTCCGATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGTGGGTTCTTAAAACAGAAAGACGCTGCAACATCCTTCAGATTGAG]

[+] EMBL CA762245             [TTTTTTTTTTGACATAAATAGCCCACCCGTCTTTATACATTTTGTAGAACGCTGTCAATTGCAAACATCAGGATTCAGGATACCAGCAATGAATTTGGCACACGATTCCATTCTCATTTCTCAACAATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGTGTTATAGCATGATGCGATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACTCCATGTATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTCTTCCGTAGGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCGTCTTCCTCCGATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGTGGGTTCTTAAAACAGAAAGACGCTGCAACATCCTTCAGATTGAG]




>consensus_3353#0
TTTTTTTTTTGACATAAATAGCCCACCCGTCTTTATACATTTTGTAGAACGCTGTCAATT
GCAAACATCAGGATTCAGGATACCAGCAATGAATTTGGCACACGATTCCATTCTCATTTC
TCAACAATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGTGTTATAGCA
TGATGCGATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACTC
CATGTATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTCTTC
CGTAGGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCGTCTTCC
TCCGATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGTGGGTTCTTAAAAC
AGAAAGACGCTGCAACATCCTTCAGATTGAG

consensusID : consensus_3353#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [TTTTTTTTTTTTTTTTACCAGCAATGAATTTGGCACACGATTTCATTCTCATTTCTCAACAATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGNGTTATAGCATGATGCNGATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACTCCATGTATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTNTTCCGTAGGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCATCTTCCNCCGATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGNGGGTTCTTAAAACAGAAAGACGCTGCCACATCCTTCAGATTGAGAT]

[-] EMBL AU172846             [TTTTTTTTTTTTTTTTACCAGCAATGAATTTGGCACACGATTTCATTCTCATTTCTCAACAATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGNGTTATAGCATGATGCNGATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACTCCATGTATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTNTTCCGTAGGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCATCTTCCNCCGATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGNGGGTTCTTAAAACAGAAAGACGCTGCCACATCCTTCAGATTGAGAT]




>consensus_3353#1
TTTTTTTTTTTTTTTTACCAGCAATGAATTTGGCACACGATTTCATTCTCATTTCTCAAC
AATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGNGTTATAGCATGATG
CNGATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACTCCATG
TATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTNTTCCGTA
GGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCATCTTCCNCCG
ATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGNGGGTTCTTAAAACAGAA
AGACGCTGCCACATCCTTCAGATTGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3353#0      TTTTTTTTTTGACATAAATAGCCCACCCGTCTTTATACATTTTGTAGAACGCTGTCAATT 60
consensus_3353#1      ------------------------------------------------------------
                                                                                  

consensus_3353#0      GCAAACATCAGGATTCAGGATACCAGCAATGAATTTGGCACACGATTCCATTCTCATTTC 120
consensus_3353#1      -----TTTTTTTTTTTTTTTTACCAGCAATGAATTTGGCACACGATTTCATTCTCATTTC 55
                             *     **     *************************** ************

consensus_3353#0      TCAACAATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGTGTTATAGCA 180
consensus_3353#1      TCAACAATCTCGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGNGTTATAGCA 115
                      ************************************************** *********

consensus_3353#0      TGATGCG-ATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACT 239
consensus_3353#1      TGATGCNGATAATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACT 175
                      ******  ****************************************************

consensus_3353#0      CCATGTATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTCTT 299
consensus_3353#1      CCATGTATTGAACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATCACCGCCTTTTNTT 235
                      ********************************************************* **

consensus_3353#0      CCGTAGGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCGTCTTC 359
consensus_3353#1      CCGTAGGGATTTGCAGCGCTGATGCCATGCCTCCTTCCACCGTCCACTTTCCTCATCTTC 295
                      ****************************************************** *****

consensus_3353#0      CTCCGATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGTGGGTTCTTAAAA 419
consensus_3353#1      CNCCGATGTTTGGATGCAGAGCTCTCCAAATCGATGTTTACCTTTGGNGGGTTCTTAAAA 355
                      * ********************************************* ************

consensus_3353#0      CAGAAAGACGCTGCAACATCCTTCAGATTGAG-- 451
consensus_3353#1      CAGAAAGACGCTGCCACATCCTTCAGATTGAGAT 389
                      ************** *****************