These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence [CTTTTTACCGTTCCCCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCTATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTATCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGNTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAAATTATATCTTGAATTCATATAAGTTCAAAAAAATTCAGAANTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTTAAGNTTCTCANATCTGGTCAAATATGCAATACAAAATTGGCAGATGGTTTTCTGGGAAAAAAAAAAAAAAAAAAAAATAAAAAAGCGGNCG] [+] EMBL CA766947 [CTTTTTACCGTTCCCCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCTATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTATCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGNTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAAATTATATCTTGAATTCATATAAGTTCAAAAAAATTCAGAANTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTTAAGNTTCTCANATCTGGTCAAATATGCAATACAAAATTGGCAGATGGTTTTCTGGGAAAAAAAAAAAAAAAAAAAAATAAAAAAGCGGNCG] consensusID : consensus_3355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 831 fasta sequence [CCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCCATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGTAATCTATGGCGAGGTTCTTATTTTGGAAGCTTGGAATCTCTGTGCCCGTTTTGTTTTATGCGATTTGACAGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTTCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGTTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAATTATATCTTGAATTCATATAAGTTCAAAAAATTCAGAATTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTAAGTTTCTCAGATCTGTTCAAATATGCAATA] [+] EMBL AK067494 [CCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCCATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGTAATCTATGGCGAGGTTCTTATTTTGGAAGCTTGGAATCTCTGTGCCCGTTTTGTTTTATGCGATTTGACAGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTTCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGTTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAATTATATCTTGAATTCATATAAGTTCAAAAAATTCAGAATTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTAAGTTTCTCAGATCTGTTCAAATATGCAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3355#0 CTTTTTACCGTTCCCCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGAT 60 consensus_3355#1 --------------CCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGAT 46 ********************************************** consensus_3355#0 GCTATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGG----- 115 consensus_3355#1 GCCATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGTAATC 106 ** **************************************************** consensus_3355#0 ------------------------------------------------------------ consensus_3355#1 TATGGCGAGGTTCTTATTTTGGAAGCTTGGAATCTCTGTGCCCGTTTTGTTTTATGCGAT 166 consensus_3355#0 --------AATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCA 167 consensus_3355#1 TTGACAGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCA 226 **************************************************** consensus_3355#0 CTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATC 227 consensus_3355#1 CTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATC 286 ************************************************************ consensus_3355#0 TAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGC 287 consensus_3355#1 TAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGC 346 ************************************************************ consensus_3355#0 CGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGAC 347 consensus_3355#1 CGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGAC 406 ************************************************************ consensus_3355#0 AGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGG 407 consensus_3355#1 AGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGG 466 ************************************************************ consensus_3355#0 AGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGC 467 consensus_3355#1 AGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGC 526 ************************************************************ consensus_3355#0 TGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTATCTAATT 527 consensus_3355#1 TGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTT-TCTAATT 585 **************************************************** ******* consensus_3355#0 GTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAG 587 consensus_3355#1 GTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAG 645 ************************************************************ consensus_3355#0 ACTGTACTGGAAGAAGCTATACTGCTACTAAAGNTCAGATTGGACATATAAGTTCAGAAA 647 consensus_3355#1 ACTGTACTGGAAGAAGCTATACTGCTACTAAAGTTCAGATTGGACATATAAGTTCAGAAA 705 ********************************* ************************** consensus_3355#0 AAAAATCAGAAATTATATCTTGAATTCATATAAGTTCAAAAAAATTCAGAANTATGTCTT 707 consensus_3355#1 AAAAATCAGAA-TTATATCTTGAATTCATATAAGTTCAAAAAA-TTCAGAATTATGTCTT 763 *********** ******************************* ******* ******** consensus_3355#0 GAATTCATACATCTGAGTACAGAAATTGATACCATTTTAAGNTTCTCANATCTGGTCAAA 767 consensus_3355#1 GAATTCATACATCTGAGTACAGAAATTGATACCATTT-AAGTTTCTCAGATCTGTTCAAA 822 ************************************* *** ****** ***** ***** consensus_3355#0 TATGCAATACAAAATTGGCAGATGGTTTTCTGGGAAAAAAAAAAAAAAAAAAAAATAAAA 827 consensus_3355#1 TATGCAATA--------------------------------------------------- 831 ********* consensus_3355#0 AAGCGGNCG 836 consensus_3355#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||