cluster # 3355

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Oryza sativa
cluster # 3355 cluster # 3355 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3355#0 length = 836 sequences # 1

consensus_3355#1 length = 831 sequences # 1

consensusID : consensus_3355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 836
fasta sequence

                              [CTTTTTACCGTTCCCCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCTATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTATCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGNTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAAATTATATCTTGAATTCATATAAGTTCAAAAAAATTCAGAANTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTTAAGNTTCTCANATCTGGTCAAATATGCAATACAAAATTGGCAGATGGTTTTCTGGGAAAAAAAAAAAAAAAAAAAAATAAAAAAGCGGNCG]

[+] EMBL CA766947             [CTTTTTACCGTTCCCCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCTATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTATCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGNTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAAATTATATCTTGAATTCATATAAGTTCAAAAAAATTCAGAANTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTTAAGNTTCTCANATCTGGTCAAATATGCAATACAAAATTGGCAGATGGTTTTCTGGGAAAAAAAAAAAAAAAAAAAAATAAAAAAGCGGNCG]




>consensus_3355#0
CTTTTTACCGTTCCCCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGAT
GCTATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGAATTT
GAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGG
ATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCT
TGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAA
TAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACA
AGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTT
GCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTG
TACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTATCTAATTGTGGACAAGTAAC
TTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAG
AAGCTATACTGCTACTAAAGNTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAAAT
TATATCTTGAATTCATATAAGTTCAAAAAAATTCAGAANTATGTCTTGAATTCATACATC
TGAGTACAGAAATTGATACCATTTTAAGNTTCTCANATCTGGTCAAATATGCAATACAAA
ATTGGCAGATGGTTTTCTGGGAAAAAAAAAAAAAAAAAAAAATAAAAAAGCGGNCG

consensusID : consensus_3355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 831
fasta sequence

                              [CCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCCATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGTAATCTATGGCGAGGTTCTTATTTTGGAAGCTTGGAATCTCTGTGCCCGTTTTGTTTTATGCGATTTGACAGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTTCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGTTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAATTATATCTTGAATTCATATAAGTTCAAAAAATTCAGAATTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTAAGTTTCTCAGATCTGTTCAAATATGCAATA]

[+] EMBL AK067494             [CCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCCATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGTAATCTATGGCGAGGTTCTTATTTTGGAAGCTTGGAATCTCTGTGCCCGTTTTGTTTTATGCGATTTGACAGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTTCTAATTGTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAAGCTATACTGCTACTAAAGTTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAATTATATCTTGAATTCATATAAGTTCAAAAAATTCAGAATTATGTCTTGAATTCATACATCTGAGTACAGAAATTGATACCATTTAAGTTTCTCAGATCTGTTCAAATATGCAATA]




>consensus_3355#1
CCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGATGCCATTGACGATTC
TGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGTAATCTATGGCGAGGTTCT
TATTTTGGAAGCTTGGAATCTCTGTGCCCGTTTTGTTTTATGCGATTTGACAGGAATTTG
AGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCACTAATTTGACTGGA
TTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATCTAGGCGAAAGGCTT
GCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGCCGCTGGCTGCCAAT
AATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGACAGAATTGAGGACAA
GTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGGAGCCGGCGGAGTTG
CATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGCTGTTGGCATTGTGT
ACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTTCTAATTGTGGACAAGTAACTT
ATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAGACTGTACTGGAAGAA
GCTATACTGCTACTAAAGTTCAGATTGGACATATAAGTTCAGAAAAAAAATCAGAATTAT
ATCTTGAATTCATATAAGTTCAAAAAATTCAGAATTATGTCTTGAATTCATACATCTGAG
TACAGAAATTGATACCATTTAAGTTTCTCAGATCTGTTCAAATATGCAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3355#0      CTTTTTACCGTTCCCCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGAT 60
consensus_3355#1      --------------CCTCCTAGAGAAATTCTCCCTCCGTCGACGCGAAATGAGAGGCGAT 46
                                    **********************************************

consensus_3355#0      GCTATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGG----- 115
consensus_3355#1      GCCATTGACGATTCTGAGGCGATTTGTTCTTCGGTTCCCTACTCGATCTTAGTGGTAATC 106
                      ** ****************************************************     

consensus_3355#0      ------------------------------------------------------------
consensus_3355#1      TATGGCGAGGTTCTTATTTTGGAAGCTTGGAATCTCTGTGCCCGTTTTGTTTTATGCGAT 166
                                                                                  

consensus_3355#0      --------AATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCA 167
consensus_3355#1      TTGACAGGAATTTGAGTTCTATTATCTGAAATCCTCGTCGTTAAATGGATTTGTGAGCCA 226
                              ****************************************************

consensus_3355#0      CTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATC 227
consensus_3355#1      CTAATTTGACTGGATTTGAGGTTCTTCTTCGATTCCGAGACGTTGAGCTCCCTCGTTATC 286
                      ************************************************************

consensus_3355#0      TAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGC 287
consensus_3355#1      TAGGCGAAAGGCTTGCGAGGAATGTGGTGACCATGGCGGTTTGGGAGGCGTCGACCAAGC 346
                      ************************************************************

consensus_3355#0      CGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGAC 347
consensus_3355#1      CGCTGGCTGCCAATAATGGAGACGACCGAGTTCATCAACGCCTTGAAACAGGAGTGGGAC 406
                      ************************************************************

consensus_3355#0      AGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGG 407
consensus_3355#1      AGAATTGAGGACAAGTACACGGTGATGACACTCGCAGCCACTGCGTCGCTCAGGATGTGG 466
                      ************************************************************

consensus_3355#0      AGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGC 467
consensus_3355#1      AGCCGGCGGAGTTGCATCGGCAATTGGCATGCCTCATGTTATTCCTGGTCTAATGAAGGC 526
                      ************************************************************

consensus_3355#0      TGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTTATCTAATT 527
consensus_3355#1      TGTTGGCATTGTGTACAGTGAAGGTGACTGAACAGAAGCTTGCCGTAGTGTT-TCTAATT 585
                      **************************************************** *******

consensus_3355#0      GTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAG 587
consensus_3355#1      GTGGACAAGTAACTTATACTTGTTCATCTCTGAAATCTGAAATTACTCTCTGTCCTGGAG 645
                      ************************************************************

consensus_3355#0      ACTGTACTGGAAGAAGCTATACTGCTACTAAAGNTCAGATTGGACATATAAGTTCAGAAA 647
consensus_3355#1      ACTGTACTGGAAGAAGCTATACTGCTACTAAAGTTCAGATTGGACATATAAGTTCAGAAA 705
                      ********************************* **************************

consensus_3355#0      AAAAATCAGAAATTATATCTTGAATTCATATAAGTTCAAAAAAATTCAGAANTATGTCTT 707
consensus_3355#1      AAAAATCAGAA-TTATATCTTGAATTCATATAAGTTCAAAAAA-TTCAGAATTATGTCTT 763
                      *********** ******************************* ******* ********

consensus_3355#0      GAATTCATACATCTGAGTACAGAAATTGATACCATTTTAAGNTTCTCANATCTGGTCAAA 767
consensus_3355#1      GAATTCATACATCTGAGTACAGAAATTGATACCATTT-AAGTTTCTCAGATCTGTTCAAA 822
                      ************************************* *** ****** ***** *****

consensus_3355#0      TATGCAATACAAAATTGGCAGATGGTTTTCTGGGAAAAAAAAAAAAAAAAAAAAATAAAA 827
consensus_3355#1      TATGCAATA--------------------------------------------------- 831
                      *********                                                   

consensus_3355#0      AAGCGGNCG 836
consensus_3355#1      ---------