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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1439 fasta sequence
[ACCAGACACACTCATTCACCTCACAGTCGTCGTCGACATGAAGGGTCTTTTCGCTACCGCCTTTTTGGCCACTGGCGCTTTCGCGCTCCCATCTCCTGTGGAGAATGGTCCCATCACTGCCCGCGCGGCAGCTGCTTGCGCTACTCCCGTCACCATCTCTGGCAACCCCTTCGCTTCCCGCTCCATCTACCCTAACAAGTTCTACTCTTCTGAGGTTGTTTCGGCTGCTGCTGCCATGACCGATACTGCCCTTGCTGCCAAGGCCAAGAAGGTCGCTGACATTGGTACTTTCCTGTGGATCGATACTCGATCCAAGATCGACGTTGTTGAGGATGGTATCAAGGACGTTGCTTGCGATCAGATCGCCGCCCTTGTCATCTACGATCTTCCCGGTCGTGACTGCGCCGCCAAAGCCTCCAACGGTGAGCTTGCCGTTGGTGAGATCAACGTCTACAAGACCGAGTACATTGACCCCATCGTTGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATCGAGCCCGATTCGCTCCCTAACTTGGTCACCAACATCGACCTCCAGACCTGCAAGGACTCTGCCGATGGTTACAAGGAGGGTGTCGCCTATGCCCTCAAGTCGCTCAACTTGCCCAACATCGCCATGTACATCGATGCTGGTCACGGTGGATGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCCAAGGGTCTTGCTGATGTCTACAAGCTCGCTGGCAGCCCCTCAGGTGTCCACGGTGTTGCCACCAACGTTGCTGGCTGGAACTCCTACGACCTCTCCCCTGGAGAGTTCTCCAAGGCCACCGATGCTCAGTGGAACAAGGCCCAGAACGAGAAGGAGTACGTCGCCCTCTTCTCTCCCGAGCTCAAGTCTGCTGGTATGCCCGGCCAGGCCATCATCGACACTGCCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCAACTGGTGCAACATCAACGGTGCTGGTTTCGGTGTCCGCCCAACTGGCTCCACTGGCAACTCGCTCGTCGATGCCTTCGTCTGGGTCAAGCCCGGTGGTGAGTCTGACGGTACCTCCGACACCTCTGCCAAGCGCTACGACTCCTTCTGCGGAAAGAGCGAGTCCTTCAAGCCCTCGCCCGAGGCCGGTCAGTGGAACCAGGCTTACTTCGAGATGCTCGTCAAGAACGCCAACCCCCCTCTATAAATTCTTCAATAGAGCGGCTAGGCGTGTAGTGTCTTGGGGCCACAGACATGTACAGACTTCCCAAGTCGCACACACATTTCTTGTATATAGATCAATGACTTGATGGAGTGTCTGTAAGAGGACGACGACGTGGAATGAGGCGAATGAGAGGTGTTCGATCAGGCAAAATTCTCGCTTCACTTCGCTGTCTATAGTATATAACTCAAGAATGGCATCTCTC]
[+] EMBL AK108992 [ACCAGACACACTCATTCACCTCACAGTCGTCGTCGACATGAAGGGTCTTTTCGCTACCGCCTTTTTGGCCACTGGCGCTTTCGCGCTCCCATCTCCTGTGGAGAATGGTCCCATCACTGCCCGCGCGGCAGCTGCTTGCGCTACTCCCGTCACCATCTCTGGCAACCCCTTCGCTTCCCGCTCCATCTACCCTAACAAGTTCTACTCTTCTGAGGTTGTTTCGGCTGCTGCTGCCATGACCGATACTGCCCTTGCTGCCAAGGCCAAGAAGGTCGCTGACATTGGTACTTTCCTGTGGATCGATACTCGATCCAAGATCGACGTTGTTGAGGATGGTATCAAGGACGTTGCTTGCGATCAGATCGCCGCCCTTGTCATCTACGATCTTCCCGGTCGTGACTGCGCCGCCAAAGCCTCCAACGGTGAGCTTGCCGTTGGTGAGATCAACGTCTACAAGACCGAGTACATTGACCCCATCGTTGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATCGAGCCCGATTCGCTCCCTAACTTGGTCACCAACATCGACCTCCAGACCTGCAAGGACTCTGCCGATGGTTACAAGGAGGGTGTCGCCTATGCCCTCAAGTCGCTCAACTTGCCCAACATCGCCATGTACATCGATGCTGGTCACGGTGGATGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCCAAGGGTCTTGCTGATGTCTACAAGCTCGCTGGCAGCCCCTCAGGTGTCCACGGTGTTGCCACCAACGTTGCTGGCTGGAACTCCTACGACCTCTCCCCTGGAGAGTTCTCCAAGGCCACCGATGCTCAGTGGAACAAGGCCCAGAACGAGAAGGAGTACGTCGCCCTCTTCTCTCCCGAGCTCAAGTCTGCTGGTATGCCCGGCCAGGCCATCATCGACACTGCCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCAACTGGTGCAACATCAACGGTGCTGGTTTCGGTGTCCGCCCAACTGGCTCCACTGGCAACTCGCTCGTCGATGCCTTCGTCTGGGTCAAGCCCGGTGGTGAGTCTGACGGTACCTCCGACACCTCTGCCAAGCGCTACGACTCCTTCTGCGGAAAGAGCGAGTCCTTCAAGCCCTCGCCCGAGGCCGGTCAGTGGAACCAGGCTTACTTCGAGATGCTCGTCAAGAACGCCAACCCCCCTCTATAAATTCTTCAATAGAGCGGCTAGGCGTGTAGTGTCTTGGGGCCACAGACATGTACAGACTTCCCAAGTCGCACACACATTTCTTGTATATAGATCAATGACTTGATGGAGTGTCTGTAAGAGGACGACGACGTGGAATGAGGCGAATGAGAGGTGTTCGATCAGGCAAAATTCTCGCTTCACTTCGCTGTCTATAGTATATAACTCAAGAATGGCATCTCTC]
consensusID : consensus_3362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1434 fasta sequence
[GCCCCAAGCACTCACTCACTTCCAACAGTCGACATCATGAAGGGTCTTTTCACCGCCGTCCTGGCATCTGCCGCCTCGTGCGTGCTCGCCGCTCCCTCCCCCGTTGAGCAGGGTCCCATCACTGCTCGTGCCGCTGGCGCCGCTGCTGCAGCATGTGCCACTCCCGTCACTCTTTCTGGCAACCCCTTCGCCTCCCGCAAGATCTATGCCAACAAGTTCTACTCATCTGAGGTCGTCTCGGCTGCGTCTGCTATGAGCGACCCTGCTCTGGCTTCGGCCGCTGCTAAGGTTGCCGACATCGGTACCTTCTTGTGGATCGATACCCGTGCCAAGATCAACGAGGTCGTCGAAGATGGTGTCAAGGATGTTCCTTGCGACCAGATCGCCGCTCTTGTCATCTACGACCTGCCCGGCCGTGATTGTGCTGCCAAGGCATCCAACGGAGAGCTTCCCGTTGGTAGCTTGAGTACTTACAAGACTGAGTACATTGACCCCATCGTCGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATTGAGCCCGATTCCCTCCCCAACCTGGTCACCAACGCCGACCTCCAGACTTGCAAGGACTCCGCATCTGGCTACCGCGATGGTGTTGCGTACGCCCTCAAGTCGCTTAACTTGCCCAACATTGCCATGTACATCGATGCTGGTCACGGAGGCTGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCTCAAGAACTCGCCAAGGTCTACAAGGCCGCCGGCTCCCCCAAGCAAGTCCGCGGTGTCTCCACCAACGTCGCCGGCTGGAACTCATACGACCTCTCCCCAGGAGAGTTCTCCAAGGCCACCGACGCCCAGTGGAACAAGGCACAAAACGAGAAGCAATTCGTCGCACTCTTCTCGCCCGAGCTCAAGTCTGCTGGCATGCCCGGCCAAGCCATCATCGACACTGGCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCCACTGGTGCAACGTCAAGGGCGCTGGCTTCGGTGTTCGCCCCACTGGCAGCACCGGCAACAGCCTTGTTGACGCCTTTGTGTGGGTCAAGCCAGGTGGTGAGTCGGATGGTACTTCTGACTCGTCCGCGACCCGATACGACAGCTTCTGCGGTATGCCTGATGCGTACACCCCATCCCCCGAGGCTGGACAGTGGAACCAGGCCTACTTTGAGGACCTTGTCAAGAACGCTAAGCCAGCTTTGTAAGCGACGCGGAGCTAGGCAGATAATGCCAGCTTTTTTTTGGTGATTGGGACAGTCACTTGTATATAGATTTATGATGTGGAGGACGAGGAGAGAGGCAAAAAGAGGTGGATGAAGATGAGGATGGAGATCCGGTATTGTTTTCATGTACATTCACCTTTTTGATAAAATGCAAAATGCAAAGACTCTCGTTTAGAA]
[+] EMBL AK110544 [GCCCCAAGCACTCACTCACTTCCAACAGTCGACATCATGAAGGGTCTTTTCACCGCCGTCCTGGCATCTGCCGCCTCGTGCGTGCTCGCCGCTCCCTCCCCCGTTGAGCAGGGTCCCATCACTGCTCGTGCCGCTGGCGCCGCTGCTGCAGCATGTGCCACTCCCGTCACTCTTTCTGGCAACCCCTTCGCCTCCCGCAAGATCTATGCCAACAAGTTCTACTCATCTGAGGTCGTCTCGGCTGCGTCTGCTATGAGCGACCCTGCTCTGGCTTCGGCCGCTGCTAAGGTTGCCGACATCGGTACCTTCTTGTGGATCGATACCCGTGCCAAGATCAACGAGGTCGTCGAAGATGGTGTCAAGGATGTTCCTTGCGACCAGATCGCCGCTCTTGTCATCTACGACCTGCCCGGCCGTGATTGTGCTGCCAAGGCATCCAACGGAGAGCTTCCCGTTGGTAGCTTGAGTACTTACAAGACTGAGTACATTGACCCCATCGTCGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATTGAGCCCGATTCCCTCCCCAACCTGGTCACCAACGCCGACCTCCAGACTTGCAAGGACTCCGCATCTGGCTACCGCGATGGTGTTGCGTACGCCCTCAAGTCGCTTAACTTGCCCAACATTGCCATGTACATCGATGCTGGTCACGGAGGCTGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCTCAAGAACTCGCCAAGGTCTACAAGGCCGCCGGCTCCCCCAAGCAAGTCCGCGGTGTCTCCACCAACGTCGCCGGCTGGAACTCATACGACCTCTCCCCAGGAGAGTTCTCCAAGGCCACCGACGCCCAGTGGAACAAGGCACAAAACGAGAAGCAATTCGTCGCACTCTTCTCGCCCGAGCTCAAGTCTGCTGGCATGCCCGGCCAAGCCATCATCGACACTGGCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCCACTGGTGCAACGTCAAGGGCGCTGGCTTCGGTGTTCGCCCCACTGGCAGCACCGGCAACAGCCTTGTTGACGCCTTTGTGTGGGTCAAGCCAGGTGGTGAGTCGGATGGTACTTCTGACTCGTCCGCGACCCGATACGACAGCTTCTGCGGTATGCCTGATGCGTACACCCCATCCCCCGAGGCTGGACAGTGGAACCAGGCCTACTTTGAGGACCTTGTCAAGAACGCTAAGCCAGCTTTGTAAGCGACGCGGAGCTAGGCAGATAATGCCAGCTTTTTTTTGGTGATTGGGACAGTCACTTGTATATAGATTTATGATGTGGAGGACGAGGAGAGAGGCAAAAAGAGGTGGATGAAGATGAGGATGGAGATCCGGTATTGTTTTCATGTACATTCACCTTTTTGATAAAATGCAAAATGCAAAGACTCTCGTTTAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3362#0 ACCAGACACACTCATTCACCTCACAGTCGTCGTCGACATGAAGGGTCTTTTCGCTACCGC 60
consensus_3362#1 GCCCCAAGCACTCACTCACTTC-CAACAGTCGACATCATGAAGGGTCTTTTCACCGCCGT 59
** * ****** **** ** ** **** * **************** * ***
consensus_3362#0 CTTTTTGGCCACTGGCGCTTTCGCGCTC------CCATCTCCTGTGGAGAATGGTCCCAT 114
consensus_3362#1 CCTGGCATCTGCCGCCTCGTGCGTGCTCGCCGCTCCCTCCCCCGTTGAGCAGGGTCCCAT 119
* * * * * * * * ** **** ** ** ** ** *** * ********
consensus_3362#0 CACTGCCCG------------CGCGGCAGCTGCTTGCGCTACTCCCGTCACCATCTCTGG 162
consensus_3362#1 CACTGCTCGTGCCGCTGGCGCCGCTGCTGCAGCATGTGCCACTCCCGTCACTCTTTCTGG 179
****** ** *** ** ** ** ** ** *********** * *****
consensus_3362#0 CAACCCCTTCGCTTCCCGCTCCATCTACCCTAACAAGTTCTACTCTTCTGAGGTTGTTTC 222
consensus_3362#1 CAACCCCTTCGCCTCCCGCAAGATCTATGCCAACAAGTTCTACTCATCTGAGGTCGTCTC 239
************ ****** ***** * ************** ******** ** **
consensus_3362#0 GGCTGCTGCTGCCATGACCGATACTGCCCTTGCTGCCAAGGCCAAGAAGGTCGCTGACAT 282
consensus_3362#1 GGCTGCGTCTGCTATGAGCGACCCTGCTCTGGCTTCGGCCGCTGCTAAGGTTGCCGACAT 299
****** **** **** *** **** ** *** * ** ***** ** *****
consensus_3362#0 TGGTACTTTCCTGTGGATCGATACTCGATCCAAGATCGACG---TTGTTGAGGATGGTAT 339
consensus_3362#1 CGGTACCTTCTTGTGGATCGATACCCGTGCCAAGATCAACGAGGTCGTCGAAGATGGTGT 359
***** *** ************* ** ******** *** * ** ** ****** *
consensus_3362#0 CAAGGACGTTGCTTGCGATCAGATCGCCGCCCTTGTCATCTACGATCTTCCCGGTCGTGA 399
consensus_3362#1 CAAGGATGTTCCTTGCGACCAGATCGCCGCTCTTGTCATCTACGACCTGCCCGGCCGTGA 419
****** *** ******* *********** ************** ** ***** *****
consensus_3362#0 CTGCGCCGCCAAAGCCTCCAACGGTGAGCTTGCCGTTGGTGAGATCAACGTCTACAAGAC 459
consensus_3362#1 TTGTGCTGCCAAGGCATCCAACGGAGAGCTTCCCGTTGGTAGCTTGAGTACTTACAAGAC 479
** ** ***** ** ******** ****** ******** * * ********
consensus_3362#0 CGAGTACATTGACCCCATCGTTGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCT 519
consensus_3362#1 TGAGTACATTGACCCCATCGTCGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCT 539
******************** **************************************
consensus_3362#0 GGTCATCGAGCCCGATTCGCTCCCTAACTTGGTCACCAACATCGACCTCCAGACCTGCAA 579
consensus_3362#1 GGTCATTGAGCCCGATTCCCTCCCCAACCTGGTCACCAACGCCGACCTCCAGACTTGCAA 599
****** *********** ***** *** *********** ************ *****
consensus_3362#0 GGACTCTGCCGATGGTTACAAGGAGGGTGTCGCCTATGCCCTCAAGTCGCTCAACTTGCC 639
consensus_3362#1 GGACTCCGCATCTGGCTACCGCGATGGTGTTGCGTACGCCCTCAAGTCGCTTAACTTGCC 659
****** ** *** *** ** ***** ** ** ************** ********
consensus_3362#0 CAACATCGCCATGTACATCGATGCTGGTCACGGTGGATGGCTCGGCTGGAACGACAACCT 699
consensus_3362#1 CAACATTGCCATGTACATCGATGCTGGTCACGGAGGCTGGCTCGGCTGGAACGACAACCT 719
****** ************************** ** ***********************
consensus_3362#0 GAAGCCCGGTGCCAAGGGTCTTGCTGATGTCTACAAGCTCGCTGGCAGCCCCTCAGGTGT 759
consensus_3362#1 GAAGCCCGGTGCTCAAGAACTCGCCAAGGTCTACAAGGCCGCCGGCTCCCCCAAGCAAGT 779
************ * * ** ** * ********* *** *** **** **
consensus_3362#0 CCACGGTGTTGCCACCAACGTTGCTGGCTGGAACTCCTACGACCTCTCCCCTGGAGAGTT 819
consensus_3362#1 CCGCGGTGTCTCCACCAACGTCGCCGGCTGGAACTCATACGACCTCTCCCCAGGAGAGTT 839
** ****** ********** ** *********** ************** ********
consensus_3362#0 CTCCAAGGCCACCGATGCTCAGTGGAACAAGGCCCAGAACGAGAAGGAGTACGTCGCCCT 879
consensus_3362#1 CTCCAAGGCCACCGACGCCCAGTGGAACAAGGCACAAAACGAGAAGCAATTCGTCGCACT 899
*************** ** ************** ** ********* * * ****** **
consensus_3362#0 CTTCTCTCCCGAGCTCAAGTCTGCTGGTATGCCCGGCCAGGCCATCATCGACACTGCCCG 939
consensus_3362#1 CTTCTCGCCCGAGCTCAAGTCTGCTGGCATGCCCGGCCAAGCCATCATCGACACTGGCCG 959
****** ******************** *********** **************** ***
consensus_3362#0 TAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCAACTGGTGCAACATCAACGGTGCTGG 999
consensus_3362#1 TAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCCACTGGTGCAACGTCAAGGGCGCTGG 1019
********************************** *********** **** ** *****
consensus_3362#0 TTTCGGTGTCCGCCCAACTGGCTCCACTGGCAACTCGCTCGTCGATGCCTTCGTCTGGGT 1059
consensus_3362#1 CTTCGGTGTTCGCCCCACTGGCAGCACCGGCAACAGCCTTGTTGACGCCTTTGTGTGGGT 1079
******** ***** ****** *** ****** ** ** ** ***** ** *****
consensus_3362#0 CAAGCCCGGTGGTGAGTCTGACGGTACCTCCGACACCTCTGCCAAGCGCTACGACTCCTT 1119
consensus_3362#1 CAAGCCAGGTGGTGAGTCGGATGGTACTTCTGACTCGTCCGCGACCCGATACGACAGCTT 1139
****** *********** ** ***** ** *** * ** ** * ** ****** ***
consensus_3362#0 CTGCGGAAAGAGCGAGTCCTTCAAGCCCTCGCCCGAGGCCGGTCAGTGGAACCAGGCTTA 1179
consensus_3362#1 CTGCGGTATGCCTGATGCGTACACCCCATCCCCCGAGGCTGGACAGTGGAACCAGGCCTA 1199
****** * * ** * * ** ** ** ******** ** ************** **
consensus_3362#0 CTTCGAGATGCTCGTCAAGAACGCCAACCCCCCTCTATAAATTCTTCAATAGAGCGGCTA 1239
consensus_3362#1 CTTTGAGGACCTTGTCAAGAACGCTAAGCCAGCTTTGTAAG-----CGAC-GCGGAGCTA 1253
*** *** ** *********** ** ** ** * *** * * * * ****
consensus_3362#0 GGCGTGTAGTGTCTTGGGGCCACAGACATGTACAGACTTCCCAAGTCGCACACACATTTC 1299
consensus_3362#1 GGCAGATAATGCC----------AGCTTTTT-----TTTGGTGATTGGGACAGTCA---C 1295
*** ** ** * ** * * ** * * * *** ** *
consensus_3362#0 TTGTATATAGATCAATGACTTGATGGAGTGTCTGTAAGAGGACGACGACGTGGAATGAGG 1359
consensus_3362#1 TTGTATATAGATTTATGATGTGGAGGACG------AGGAGAGAGGCAAAAAGAGGTG-GA 1348
************ **** ** *** * *** * * * * ** *
consensus_3362#0 CGAATGAGAGGTGTTCGATCAGGCAAAATTCTCGCTTCACTTCGCTGTCT--ATAGTATA 1417
consensus_3362#1 TGAAGATGAGGATGGAGATCCGGTATTGTTTTCATGTACATTCACCTTTTTGATAAAATG 1408
*** **** **** ** * ** ** * *** * * * *** **
consensus_3362#0 TAACTCAAGAATGGCATCTCTC---- 1439
consensus_3362#1 CAAAATGCAAAGACTCTCGTTTAGAA 1434
** ** ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||