cluster # 3371

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Oryza sativa
cluster # 3371 cluster # 3371 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3371#0 length = 525 sequences # 1

consensus_3371#1 length = 480 sequences # 1

consensusID : consensus_3371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [AATTTCCCCGGGTTCGACCACACGCCGTCCGGATTTTGGACTCGGATTGGGAGAACCTTTTGAAAGGATGCTGTGCCAAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCCCAGAAAAAAAAATGTGTGTACAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGCGATTTTTTTTTAGTTGTTGACCAAACTAACACTAGAAGCGTCCTGTCTGGTAGGGAGACGATAGTTTATCAAAGTGTTCAACTGTCAAGGAGTTTGTTGCCCTAAAACCCCTTCGGCTCCACCACCTCAGTGCCCAGTGTTCTGCTGGATCCAATCGTGTCTCACCAGAACTCATGGCGTGTGAATAAAGAAAAAAAAAA]

[+] EMBL BI803834             [AATTTCCCCGGGTTCGACCACACGCCGTCCGGATTTTGGACTCGGATTGGGAGAACCTTTTGAAAGGATGCTGTGCCAAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCCCAGAAAAAAAAATGTGTGTACAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGCGATTTTTTTTTAGTTGTTGACCAAACTAACACTAGAAGCGTCCTGTCTGGTAGGGAGACGATAGTTTATCAAAGTGTTCAACTGTCAAGGAGTTTGTTGCCCTAAAACCCCTTCGGCTCCACCACCTCAGTGCCCAGTGTTCTGCTGGATCCAATCGTGTCTCACCAGAACTCATGGCGTGTGAATAAAGAAAAAAAAAA]




>consensus_3371#0
AATTTCCCCGGGTTCGACCACACGCCGTCCGGATTTTGGACTCGGATTGGGAGAACCTTT
TGAAAGGATGCTGTGCCAAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATAT
TTCTCGAGTCCATGAAAAATTTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATG
GAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTAT
TTAGCCCAGAAAAAAAAATGTGTGTACAAAGAGAGAAAGTACAACCTCATGGGCTAGCGT
CAAGGACATCTGGGAATTGAGATGCGATTTTTTTTTAGTTGTTGACCAAACTAACACTAG
AAGCGTCCTGTCTGGTAGGGAGACGATAGTTTATCAAAGTGTTCAACTGTCAAGGAGTTT
GTTGCCCTAAAACCCCTTCGGCTCCACCACCTCAGTGCCCAGTGTTCTGCTGGATCCAAT
CGTGTCTCACCAGAACTCATGGCGTGTGAATAAAGAAAAAAAAAA

consensusID : consensus_3371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [ATGGAGACTTTTGAAGATCTTTCAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCGCCAGAAAAAAAAATGTGTGTACAAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGGCGATTTTTTTTTAGTTGTTGACCAAACCTAAGCCCTAGAAGCGTCCTGGTCTGGTAGGGAGGACGATAGGTTATCAAAGTGTCAACTGTCAAGGAGGTTGGTGGCCTAAAACGCCTTCGGCTCCACCACTCATTTACCATTTTCTTCTTTGATTGCAATCGTGTCTCACCAGAAACTCATGGCGTGTGAATAAGGAAGAAAAAAAAAAA]

[+] EMBL BI803360             [ATGGAGACTTTTGAAGATCTTTCAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATATTTCTCGAGTCCATGAAAAATTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTATTTAGCGCCAGAAAAAAAAATGTGTGTACAAAAGAGAGAAAGTACAACCTCATGGGCTAGCGTCAAGGACATCTGGGAATTGAGATGGCGATTTTTTTTTAGTTGTTGACCAAACCTAAGCCCTAGAAGCGTCCTGGTCTGGTAGGGAGGACGATAGGTTATCAAAGTGTCAACTGTCAAGGAGGTTGGTGGCCTAAAACGCCTTCGGCTCCACCACTCATTTACCATTTTCTTCTTTGATTGCAATCGTGTCTCACCAGAAACTCATGGCGTGTGAATAAGGAAGAAAAAAAAAAA]




>consensus_3371#1
ATGGAGACTTTTGAAGATCTTTCAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGT
AATATTTCTCGAGTCCATGAAAAATTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATC
CATGGAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCAC
TTATTTAGCGCCAGAAAAAAAAATGTGTGTACAAAAGAGAGAAAGTACAACCTCATGGGC
TAGCGTCAAGGACATCTGGGAATTGAGATGGCGATTTTTTTTTAGTTGTTGACCAAACCT
AAGCCCTAGAAGCGTCCTGGTCTGGTAGGGAGGACGATAGGTTATCAAAGTGTCAACTGT
CAAGGAGGTTGGTGGCCTAAAACGCCTTCGGCTCCACCACTCATTTACCATTTTCTTCTT
TGATTGCAATCGTGTCTCACCAGAAACTCATGGCGTGTGAATAAGGAAGAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3371#0      AATTTCCCCGGGTTCGACCACACGCCGTCCGGATTTTGGACTCGGATTGGGAGAACCTTT 60
consensus_3371#1      -------------------------------------------------ATGGAGACTTT 11
                                                                          **  ****

consensus_3371#0      TGAAAGGATGCTGTGCCAAATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATAT 120
consensus_3371#1      TGAA--GATCTTTC----AATCGTTTTCCTACACGGGGACCACCTTCGCGGGAGTAATAT 65
                      ****  ***  *      ******************************************

consensus_3371#0      TTCTCGAGTCCATGAAAAATTTGCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATG 180
consensus_3371#1      TTCTCGAGTCCATGAAAAATT-GCTCTGATGATATTTCTCCAGTTTGTGGTGAATCCATG 124
                      ********************* **************************************

consensus_3371#0      GAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTAT 240
consensus_3371#1      GAAGAAGGACAGATTTTATCACATTTTCTGGTGTGGTTTATGCCACGTCTAATCACTTAT 184
                      ************************************************************

consensus_3371#0      TTAGC-CCAGAAAAAAAAATGTGTGTACAAA-GAGAGAAAGTACAACCTCATGGGCTAGC 298
consensus_3371#1      TTAGCGCCAGAAAAAAAAATGTGTGTACAAAAGAGAGAAAGTACAACCTCATGGGCTAGC 244
                      ***** ************************* ****************************

consensus_3371#0      GTCAAGGACATCTGGGAATTGAGATG-CGATTTTTTTTTAGTTGTTGACCAAACT--AAC 355
consensus_3371#1      GTCAAGGACATCTGGGAATTGAGATGGCGATTTTTTTTTAGTTGTTGACCAAACCTAAGC 304
                      ************************** ***************************   * *

consensus_3371#0      ACTAGAAGCGTCCTG-TCTGGTAGGGAG-ACGATAGTTTATCAAAGTGTTCAACTGTCAA 413
consensus_3371#1      CCTAGAAGCGTCCTGGTCTGGTAGGGAGGACGATAGGTTATCAAAGTGT-CAACTGTCAA 363
                       ************** ************ ******* ************ **********

consensus_3371#0      GGAGTTTGTTGCCCTAAAACCCCTTCGGCTCCACCACCTCAGTGCCCAGTGTTCTGCTGG 473
consensus_3371#1      GGAGGTTGGTGGCCTAAAACGCCTTCGGCTCCACCAC-TCATTTACCATTTTCTTCTTTG 422
                      **** *** ** ******** **************** *** *  *** * *  *  * *

consensus_3371#0      ATC-CAATCGTGTCTCACCAGAA-CTCATGGCGTGTGAATAAAGAAAAAAAAAA---- 525
consensus_3371#1      ATTGCAATCGTGTCTCACCAGAAACTCATGGCGTGTGAATAAGGAAGAAAAAAAAAAA 480
                      **  ******************* ****************** *** *******