cluster # 3372

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Oryza sativa
cluster # 3372 cluster # 3372 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3372#0 length = 648 sequences # 1

consensus_3372#1 length = 632 sequences # 1

consensusID : consensus_3372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [TGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGCGGCCGCAAGCTGCGCGTGCTGCGCACCGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGCTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTACAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCCCTCCTCAAGCAGAGGGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACGGCCGCCTACATCCTCAACCGCTCGCCTACCAAGGCCCTCGATGGCAGGACACCGTACGAGGCTTGGCATGGGCGCAAGCCGGCGGTCTCCCACCTGCGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGCAA]

[+] EMBL CB666196             [TGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGCGGCCGCAAGCTGCGCGTGCTGCGCACCGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGCTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTACAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCCCTCCTCAAGCAGAGGGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACGGCCGCCTACATCCTCAACCGCTCGCCTACCAAGGCCCTCGATGGCAGGACACCGTACGAGGCTTGGCATGGGCGCAAGCCGGCGGTCTCCCACCTGCGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGCAA]




>consensus_3372#0
TGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTT
TCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTG
TGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTATTTCCTGCTGCTCGTCGACGA
CCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCAT
CAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGCGGCCGCAAGCTGCGCGTGCTGCGCAC
CGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGCTGATGAGGGCAT
TCAGCGCCACTACACCGCGCCGTACAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAA
CCAGACGGTTGTGGGGATGGCTCGGGCCCTCCTCAAGCAGAGGGGGATGCCGGCCATCTT
CTGGGGGGAGGCGGTGGTGACGGCCGCCTACATCCTCAACCGCTCGCCTACCAAGGCCCT
CGATGGCAGGACACCGTACGAGGCTTGGCATGGGCGCAAGCCGGCGGTCTCCCACCTGCG
GGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGCAA

consensusID : consensus_3372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [CGTGAGCACAGCTGCTCACCGGAGTCTACTACATCCGCGTGAGAATTCTATAATCAGCGTGGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTGGGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCTCAGCGCGCAGGTCGCACATCCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCAGTGGCACGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGAGATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACAACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGCTGCGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGCGGAGTCGCCGCTCTAGAGTATCCTGAGGGCCCAAGCTACGCGTA]

[+] EMBL BI806499             [CGTGAGCACAGCTGCTCACCGGAGTCTACTACATCCGCGTGAGAATTCTATAATCAGCGTGGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTGGGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCTCAGCGCGCAGGTCGCACATCCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCAGTGGCACGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGAGATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACAACGTTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGCTGCGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGCGGAGTCGCCGCTCTAGAGTATCCTGAGGGCCCAAGCTACGCGTA]




>consensus_3372#1
CGTGAGCACAGCTGCTCACCGGAGTCTACTACATCCGCGTGAGAATTCTATAATCAGCGT
GGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTG
GGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCT
CAGCGCGCAGGTCGCACATCCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCA
GTGGCACGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGA
GATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGT
GACAAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCT
CGGGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACAACG
TTATTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAG
CAAGGGAGAGCTGCGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGCGGAGTCGCCGCT
CTAGAGTATCCTGAGGGCCCAAGCTACGCGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3372#0      --TGACCAC-GTGGAGCAGC----TCTGCGACGTCTGCGTGGTGACA----AAGCAGCGG 49
consensus_3372#1      CGTGAGCACAGCTGCTCACCGGAGTCTACTACATCCGCGTGAGAATTCTATAATCAGCGT 60
                        *** *** *  *  ** *    *** * ** ** *****   *      ** ***** 

consensus_3372#0      CGGCTCCCCTTTCCCCAGCAGACGA-GCTTCCGAGCCAAGGAGCGGCTCGGGCTCGTGCA 108
consensus_3372#1      GGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTG 120
                       **    *        * * *   * ** *    * * ****  * ***  *    *   

consensus_3372#0      CGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAG---GACGACGTTATTTCCT 165
consensus_3372#1      GGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCT 180
                       *    *    ** ***   *  *   **  **   ***       ****  **  ****

consensus_3372#0      GCTGCTCGTCGACGACCTCTCCCGCTA--CATGTGGGTGAT-GGTCCTCGGCAGCAAGGG 222
consensus_3372#1      -CAGCGCGCAGGTCGCACATCCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGC 239
                       * ** **  *    *   *** * *   *  *  * *  * **  *   *  **  ** 

consensus_3372#0      AGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGCGGCCGCAA 282
consensus_3372#1      AGTGGC-ACGAGCGCT-TCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAA 297
                      ** ***  **  ***  ** ****    **    *  **   *  * **  * *   ***

consensus_3372#0      GCTGCGCGTGCTGCGCACCGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTA 342
consensus_3372#1      GGAGATGGTGCGAGGCAT-----GCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGT- 351
                      *  *   ****   ***       * * * *     ****  *      *  *** *** 

consensus_3372#0      CTGCGCTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTACAGCCCACAGCAGAACGG 402
consensus_3372#1      CTGCG-TGGTGA-------CAAAGCAGCGGCGGCTCCCCTT----TCCCCAGCAGACGAG 399
                      ***** ** ***       **  **  *  *  * * ** *     ** *******   *

consensus_3372#0      CGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCCCTCCTCAAGCAGAG 462
consensus_3372#1      CTTC--CGAGC----CAAGGAG-CGGCTCGGGCTCGTGCACGGGGACTTGTGTGGCCCAG 452
                      * **  *****    ***  ** *** *  **     ** ****  **  *   **  **

consensus_3372#0      GGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACGGCCGCCT----ACATCCTCA 518
consensus_3372#1      T--GACACCGGCCA-CACCAGGAGGACAACGTTATTTCCTGCTGCTCGTCGACGACCTCT 509
                         **  ******* *  * ** **    ** *  *  * ** **      **  **** 

consensus_3372#0      ACCGCT---CGCCTACCAAGGCCCTCGATGGCAGGACACCG-TACGAGGCTTGGCATGGG 574
consensus_3372#1      CCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGCTGCGACGCCAT---CAGG 566
                       *****    *      * ** *****   *** *  *  * * *** **        **

consensus_3372#0      CGCAAGCCGGCGGTCTCCCACCTGCGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTT 634
consensus_3372#1      CATGCGCAGGCTGCTGCAGA---GCGGAGTCGCCGCT--CTAGAGTATCCTGAGGGCCCA 621
                      *    ** *** *   *  *   ****     * ***  ** * **   *  ***  *  

consensus_3372#0      GGCCACATCGGCAA 648
consensus_3372#1      AGCTACGCGTA--- 632
                       ** **