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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1413 fasta sequence
[TTACACAGTATATCTCTCCTATACTATCCAACATGGTATCAGAGCGGGCGATCTAATCGCCTCTCTCTCACGCTTCCGCTCGTCGCCCCTGGGAGGGTTCTGATCTCCGGGGGCGGCCACCGTTTCTTTTTTTTTTCTTCTTTGCGTCGTCATCGTCGTTCTTCGTCAAGCAGCAAGCAGCACATCGTCCTCCACCTCCGTCGTCCTCCTCGGATCAGATCTCGCGTCGATGATGGGCGCCCTCCGCTGGCTACTGGTCCTCTTCACTGGCATCCCCGATCCCGTCGCACCTGACCGCCAGCCCTCCCGGATCTGGATCATCGGCGGCGCCGGCCACCACCACCACCTCCGATCCGATCTGCTCCACCACCACCGGCGCTCCGGGCGGACGGCCACCTCTTCACCGCGCCACATCCTCAGATCGTATCTGAGGGACCCCGTCGCCTGCCGCCGCCGACCTCACCACCTTCAGATCCACGCCGTTCGTTCGCCGGCTCCTCCTCCGGACCACGGCCGTCGTCCGGGGGGACGAGCTCCCGTTCGTCGTCTCCATGCCGCGCGTCCTGCAATCCGCCAGGGCGCTGGCCTCGCCGCCTCGACGTCCTTGCTGGAGCCGGTGGTGTGGACGCAAGTCGACGGGCGGCCGGTGGAGGATGCCGAGGCCAGCGCCATCGGCGGCCAGGAACCCCGTCCGCCACCGCGTCCACCCGGCTGCACAGGCCCCGTCTCGTACGGGCCCTCGTCGCCGGCGCTCTCCACTACCTCGACCTCTTCGCGGAGCACTTGCGTGAGATTGCCGTGGTCGGTAATCAAGCTGCCCGCTCTAATCTGTTTTGTCTCCATCTGCTATGATCTTGCACGTGGCAAGCAAGTGAGGAGATAGAGACGAGATGGGTGCAGAGTCGTTTAGCATGTTGACCGGGTCATGTGTGGCATTGGAGGATTCTGGATGCTACTGTTGCTGCTGTACCTTTGTCCTTTTTCCCGTTCAGAGAACGGGTTTGCGTCGCCCACCGTCTCGTCGATATCCACGCGTCTTCGACATCGGCATCGACTCTGCTTCGACTTCATCGTTCCGTCTCGGGCATCTTCGGCTTGATCACTCGTTCAAGCGCCCGGCTACAACGACTTCTGTAACCGATCGTCATTGAGCACGCGTCTACGCCACCAACCTTCGGGTTGCCGCTGCGTCGCCCCATTGGGCTGCAGTGTCGCCGCCCGTGGTCCACCTCCACCGGTTGTTGGAGTTCTCGCCGCTGCATCGACATCGAGCCGTACCTGTGTCGCCCCTTCAGGTCACAACGTTGCCCCTCTCGTCGTCTTCATCGTCGTTCGCGCTTCGACACCCTCGTCGTCCACACTGGTCATTGTTAGCCACTCGGGTTGTAACGCCCCGATTTTCGTTCGGGATTA]
[+] EMBL AK070092 [TTACACAGTATATCTCTCCTATACTATCCAACATGGTATCAGAGCGGGCGATCTAATCGCCTCTCTCTCACGCTTCCGCTCGTCGCCCCTGGGAGGGTTCTGATCTCCGGGGGCGGCCACCGTTTCTTTTTTTTTTCTTCTTTGCGTCGTCATCGTCGTTCTTCGTCAAGCAGCAAGCAGCACATCGTCCTCCACCTCCGTCGTCCTCCTCGGATCAGATCTCGCGTCGATGATGGGCGCCCTCCGCTGGCTACTGGTCCTCTTCACTGGCATCCCCGATCCCGTCGCACCTGACCGCCAGCCCTCCCGGATCTGGATCATCGGCGGCGCCGGCCACCACCACCACCTCCGATCCGATCTGCTCCACCACCACCGGCGCTCCGGGCGGACGGCCACCTCTTCACCGCGCCACATCCTCAGATCGTATCTGAGGGACCCCGTCGCCTGCCGCCGCCGACCTCACCACCTTCAGATCCACGCCGTTCGTTCGCCGGCTCCTCCTCCGGACCACGGCCGTCGTCCGGGGGGACGAGCTCCCGTTCGTCGTCTCCATGCCGCGCGTCCTGCAATCCGCCAGGGCGCTGGCCTCGCCGCCTCGACGTCCTTGCTGGAGCCGGTGGTGTGGACGCAAGTCGACGGGCGGCCGGTGGAGGATGCCGAGGCCAGCGCCATCGGCGGCCAGGAACCCCGTCCGCCACCGCGTCCACCCGGCTGCACAGGCCCCGTCTCGTACGGGCCCTCGTCGCCGGCGCTCTCCACTACCTCGACCTCTTCGCGGAGCACTTGCGTGAGATTGCCGTGGTCGGTAATCAAGCTGCCCGCTCTAATCTGTTTTGTCTCCATCTGCTATGATCTTGCACGTGGCAAGCAAGTGAGGAGATAGAGACGAGATGGGTGCAGAGTCGTTTAGCATGTTGACCGGGTCATGTGTGGCATTGGAGGATTCTGGATGCTACTGTTGCTGCTGTACCTTTGTCCTTTTTCCCGTTCAGAGAACGGGTTTGCGTCGCCCACCGTCTCGTCGATATCCACGCGTCTTCGACATCGGCATCGACTCTGCTTCGACTTCATCGTTCCGTCTCGGGCATCTTCGGCTTGATCACTCGTTCAAGCGCCCGGCTACAACGACTTCTGTAACCGATCGTCATTGAGCACGCGTCTACGCCACCAACCTTCGGGTTGCCGCTGCGTCGCCCCATTGGGCTGCAGTGTCGCCGCCCGTGGTCCACCTCCACCGGTTGTTGGAGTTCTCGCCGCTGCATCGACATCGAGCCGTACCTGTGTCGCCCCTTCAGGTCACAACGTTGCCCCTCTCGTCGTCTTCATCGTCGTTCGCGCTTCGACACCCTCGTCGTCCACACTGGTCATTGTTAGCCACTCGGGTTGTAACGCCCCGATTTTCGTTCGGGATTA]
consensusID : consensus_338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CGTCGTTCTTCGTCAAGCAGCAAGCAGCACATCGTCCTCCACCTCCGTCGTCCTCCTCGGATCAGATCTCGCGTCGATGATGGGCGCCCTCCGCTGGCTACTGGTCCTCTTCACTGGCATCCCCGATCCCGTCGCACCTGACCGCCAGCCCTCCCGGATCTGGATCATCGGCGGCGCCGGCCACCACCACCACCTCCGATCCGATCTGCTCCACCGCCACCGGCGCTCCGGGCGGACGGCCACCTCTTCACCGCGCCACATCCTCAGATCGTATCTGAGGGACCCCGTCGCCTGCCGCCGCCGACCTCACCACCTTCAGATCCACGCCGTTCGTTCGCCGGCTCCTCCTCCGGACCACGGCCGTCGTCCGGGGGGACGAGCTCCCGTTCGTCGTCTCCATGCCGCGCGTCCTGCAATCCGCCAGGGCGCTGGCCTCGCCGCCTCGACGTCCTTGCTGGAGCCGGTGGTGTGGACGCAAGTCGACGGGCGGCCGGTGGAGGATGCCGAGGCCAGCGCCATCGGCGGCCAGGAACCCCGTCCGCCACCGCGTCCACCCGGCTGCACAGGCCCCGTCTCGTACGGGCCCTCGTCGCCGGCGCTCTCCACTACCTCGACCTCTTCCGCTTATTTATATGCTTAAACTCAGCGGGTAGTCCCGCCTGAC]
[-] EMBL AK063745 [CGTCGTTCTTCGTCAAGCAGCAAGCAGCACATCGTCCTCCACCTCCGTCGTCCTCCTCGGATCAGATCTCGCGTCGATGATGGGCGCCCTCCGCTGGCTACTGGTCCTCTTCACTGGCATCCCCGATCCCGTCGCACCTGACCGCCAGCCCTCCCGGATCTGGATCATCGGCGGCGCCGGCCACCACCACCACCTCCGATCCGATCTGCTCCACCGCCACCGGCGCTCCGGGCGGACGGCCACCTCTTCACCGCGCCACATCCTCAGATCGTATCTGAGGGACCCCGTCGCCTGCCGCCGCCGACCTCACCACCTTCAGATCCACGCCGTTCGTTCGCCGGCTCCTCCTCCGGACCACGGCCGTCGTCCGGGGGGACGAGCTCCCGTTCGTCGTCTCCATGCCGCGCGTCCTGCAATCCGCCAGGGCGCTGGCCTCGCCGCCTCGACGTCCTTGCTGGAGCCGGTGGTGTGGACGCAAGTCGACGGGCGGCCGGTGGAGGATGCCGAGGCCAGCGCCATCGGCGGCCAGGAACCCCGTCCGCCACCGCGTCCACCCGGCTGCACAGGCCCCGTCTCGTACGGGCCCTCGTCGCCGGCGCTCTCCACTACCTCGACCTCTTCCGCTTATTTATATGCTTAAACTCAGCGGGTAGTCCCGCCTGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_338#0 TTACACAGTATATCTCTCCTATACTATCCAACATGGTATCAGAGCGGGCGATCTAATCGC 60
consensus_338#1 ------------------------------------------------------------
consensus_338#0 CTCTCTCTCACGCTTCCGCTCGTCGCCCCTGGGAGGGTTCTGATCTCCGGGGGCGGCCAC 120
consensus_338#1 ------------------------------------------------------------
consensus_338#0 CGTTTCTTTTTTTTTTCTTCTTTGCGTCGTCATCGTCGTTCTTCGTCAAGCAGCAAGCAG 180
consensus_338#1 ---------------------------------CGTCGTTCTTCGTCAAGCAGCAAGCAG 27
***************************
consensus_338#0 CACATCGTCCTCCACCTCCGTCGTCCTCCTCGGATCAGATCTCGCGTCGATGATGGGCGC 240
consensus_338#1 CACATCGTCCTCCACCTCCGTCGTCCTCCTCGGATCAGATCTCGCGTCGATGATGGGCGC 87
************************************************************
consensus_338#0 CCTCCGCTGGCTACTGGTCCTCTTCACTGGCATCCCCGATCCCGTCGCACCTGACCGCCA 300
consensus_338#1 CCTCCGCTGGCTACTGGTCCTCTTCACTGGCATCCCCGATCCCGTCGCACCTGACCGCCA 147
************************************************************
consensus_338#0 GCCCTCCCGGATCTGGATCATCGGCGGCGCCGGCCACCACCACCACCTCCGATCCGATCT 360
consensus_338#1 GCCCTCCCGGATCTGGATCATCGGCGGCGCCGGCCACCACCACCACCTCCGATCCGATCT 207
************************************************************
consensus_338#0 GCTCCACCACCACCGGCGCTCCGGGCGGACGGCCACCTCTTCACCGCGCCACATCCTCAG 420
consensus_338#1 GCTCCACCGCCACCGGCGCTCCGGGCGGACGGCCACCTCTTCACCGCGCCACATCCTCAG 267
******** ***************************************************
consensus_338#0 ATCGTATCTGAGGGACCCCGTCGCCTGCCGCCGCCGACCTCACCACCTTCAGATCCACGC 480
consensus_338#1 ATCGTATCTGAGGGACCCCGTCGCCTGCCGCCGCCGACCTCACCACCTTCAGATCCACGC 327
************************************************************
consensus_338#0 CGTTCGTTCGCCGGCTCCTCCTCCGGACCACGGCCGTCGTCCGGGGGGACGAGCTCCCGT 540
consensus_338#1 CGTTCGTTCGCCGGCTCCTCCTCCGGACCACGGCCGTCGTCCGGGGGGACGAGCTCCCGT 387
************************************************************
consensus_338#0 TCGTCGTCTCCATGCCGCGCGTCCTGCAATCCGCCAGGGCGCTGGCCTCGCCGCCTCGAC 600
consensus_338#1 TCGTCGTCTCCATGCCGCGCGTCCTGCAATCCGCCAGGGCGCTGGCCTCGCCGCCTCGAC 447
************************************************************
consensus_338#0 GTCCTTGCTGGAGCCGGTGGTGTGGACGCAAGTCGACGGGCGGCCGGTGGAGGATGCCGA 660
consensus_338#1 GTCCTTGCTGGAGCCGGTGGTGTGGACGCAAGTCGACGGGCGGCCGGTGGAGGATGCCGA 507
************************************************************
consensus_338#0 GGCCAGCGCCATCGGCGGCCAGGAACCCCGTCCGCCACCGCGTCCACCCGGCTGCACAGG 720
consensus_338#1 GGCCAGCGCCATCGGCGGCCAGGAACCCCGTCCGCCACCGCGTCCACCCGGCTGCACAGG 567
************************************************************
consensus_338#0 CCCCGTCTCGTACGGGCCCTCGTCGCCGGCGCTCTCCACTACCTCGACCTCTTCGCGGAG 780
consensus_338#1 CCCCGTCTCGTACGGGCCCTCGTCGCCGGCGCTCTCCACTACCTCGACCTCTTCC--GCT 625
****************************************************** *
consensus_338#0 CACTTGCGTGAGATTGCCGTGGTCGGTAATCAAGCTGCCCGCTCTAATCTGTTTTGTCTC 840
consensus_338#1 TATTTATATGCT-TAAACTCAGCGGGTAGTC---CCGCCTGAC----------------- 664
* ** ** * * * **** ** * *** *
consensus_338#0 CATCTGCTATGATCTTGCACGTGGCAAGCAAGTGAGGAGATAGAGACGAGATGGGTGCAG 900
consensus_338#1 ------------------------------------------------------------
consensus_338#0 AGTCGTTTAGCATGTTGACCGGGTCATGTGTGGCATTGGAGGATTCTGGATGCTACTGTT 960
consensus_338#1 ------------------------------------------------------------
consensus_338#0 GCTGCTGTACCTTTGTCCTTTTTCCCGTTCAGAGAACGGGTTTGCGTCGCCCACCGTCTC 1020
consensus_338#1 ------------------------------------------------------------
consensus_338#0 GTCGATATCCACGCGTCTTCGACATCGGCATCGACTCTGCTTCGACTTCATCGTTCCGTC 1080
consensus_338#1 ------------------------------------------------------------
consensus_338#0 TCGGGCATCTTCGGCTTGATCACTCGTTCAAGCGCCCGGCTACAACGACTTCTGTAACCG 1140
consensus_338#1 ------------------------------------------------------------
consensus_338#0 ATCGTCATTGAGCACGCGTCTACGCCACCAACCTTCGGGTTGCCGCTGCGTCGCCCCATT 1200
consensus_338#1 ------------------------------------------------------------
consensus_338#0 GGGCTGCAGTGTCGCCGCCCGTGGTCCACCTCCACCGGTTGTTGGAGTTCTCGCCGCTGC 1260
consensus_338#1 ------------------------------------------------------------
consensus_338#0 ATCGACATCGAGCCGTACCTGTGTCGCCCCTTCAGGTCACAACGTTGCCCCTCTCGTCGT 1320
consensus_338#1 ------------------------------------------------------------
consensus_338#0 CTTCATCGTCGTTCGCGCTTCGACACCCTCGTCGTCCACACTGGTCATTGTTAGCCACTC 1380
consensus_338#1 ------------------------------------------------------------
consensus_338#0 GGGTTGTAACGCCCCGATTTTCGTTCGGGATTA 1413
consensus_338#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||