These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1498 fasta sequence [CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTCGCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACATCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACCCTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGACGCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGGACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACATCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACGAGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCAACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCTGGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTGTGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCATAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGAGCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTAAAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTATTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAGGTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCTTCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCTTGCTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACCTTGATGGTGTCTATGAGGGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCACGTTCCTGAAATGAATGCCATGCGTATGGTGGTACTTCTGCATGGTTCACTGGATCTGCTGCTCTCTGGGGTGTCACCACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGTTCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATGGCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGATTATCATTTG] [+] EMBL AK107386 [CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTCGCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACATCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACCCTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGACGCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGGACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACATCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACGAGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCAACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCTGGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTGTGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCATAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGAGCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTAAAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTATTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAGGTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCTTCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCTTGCTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACCTTGATGGTGTCTATGAGGGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCACGTTCCTGAAATGAATGCCATGCGTATGGTGGTACTTCTGCATGGTTCACTGGATCTGCTGCTCTCTGGGGTGTCACCACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGTTCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATGGCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGATTATCATTTG] consensusID : consensus_3381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence [GGCCTTCTGGGGCGAGTACGCGCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTCTGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAGTAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGAATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCAAGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCATTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAGGATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCTTCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTGCTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGANGACGAGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACATGGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAATCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG] [+] EMBL CA767248 [GGCCTTCTGGGGCGAGTACGCGCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTCTGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAGTAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGAATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCAAGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCATTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAGGATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCTTCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTGCTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGANGACGAGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACATGGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAATCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3381#0 CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTC 60 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 GCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACA 120 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 TCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACC 180 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 CTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGAC 240 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 GCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGG 300 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 ACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACA 360 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 TCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACG 420 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 AGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCA 480 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 ACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCT 540 consensus_3381#1 ----------------------------------------------------GGCCTTCT 8 ******** consensus_3381#0 GGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTG 600 consensus_3381#1 GGGGCGAGTACGC-GCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTC 67 ************* ********* * ***************** ** ** ******* * consensus_3381#0 TGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCA 660 consensus_3381#1 TGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAG 127 **************** ******** * ********* ******************* consensus_3381#0 TAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGA 720 consensus_3381#1 TAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGA 187 **************** ****************** **** *** *** ********* consensus_3381#0 GCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTA 780 consensus_3381#1 ATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCA 247 ******** ** *** ************** ******************** ** * consensus_3381#0 AAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTA 840 consensus_3381#1 AGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCA 307 * ********** * * ** *** ** *** * * *** *** ******* ** * consensus_3381#0 TTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAG 900 consensus_3381#1 TTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAG 367 ********************** ***************************** ** **** consensus_3381#0 GTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCT 960 consensus_3381#1 GATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCT 427 * ** **** ******************* ************ ******** ******* consensus_3381#0 TCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGC 1020 consensus_3381#1 TCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGC 487 ********* ***************** ******************************** consensus_3381#0 TTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCT---TG 1077 consensus_3381#1 TTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTG 547 ************************* ************** ********** * ** consensus_3381#0 CTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTG 1137 consensus_3381#1 CTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTG 607 ********* ****** ************** *************************** consensus_3381#0 ACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACC-TTGATGGTGTCTATGAG 1196 consensus_3381#1 ACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGAN 667 ************* ** ** ***** ********* ***** ******* ** ***** consensus_3381#0 GGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCAC 1256 consensus_3381#1 GACG-------------AGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACAT 714 * ** **** ****** ******************** ****** ** consensus_3381#0 GTTCCTGAAATGA--ATGCCATGCGTATGGTGGTACTTCTG-CATGGTTCACTGGATCTG 1313 consensus_3381#1 GGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAA 774 * * *** ***** *** * ** ***** *** **** ** * ** * *** ** consensus_3381#0 CTGCTCT--CTGGGGTGTCACC--ACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGT 1369 consensus_3381#1 TCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG------- 827 * * ** * * **** * *** **** * ******* consensus_3381#0 TCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATG 1429 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 GCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGAT 1489 consensus_3381#1 ------------------------------------------------------------ consensus_3381#0 TATCATTTG 1498 consensus_3381#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||