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Oryza sativa
cluster # 3381 cluster # 3381       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3381#0 length = 1498 sequences # 1  
consensus_3381#1 length = 827 sequences # 1  

consensusID : consensus_3381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1498
fasta sequence
                              [CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTCGCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACATCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACCCTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGACGCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGGACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACATCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACGAGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCAACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCTGGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTGTGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCATAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGAGCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTAAAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTATTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAGGTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCTTCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCTTGCTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACCTTGATGGTGTCTATGAGGGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCACGTTCCTGAAATGAATGCCATGCGTATGGTGGTACTTCTGCATGGTTCACTGGATCTGCTGCTCTCTGGGGTGTCACCACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGTTCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATGGCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGATTATCATTTG]

[+] EMBL AK107386             [CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTCGCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACATCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACCCTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGACGCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGGACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACATCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACGAGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCAACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCTGGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTGTGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCATAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGAGCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTAAAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTATTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAGGTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCTTCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCTTGCTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACCTTGATGGTGTCTATGAGGGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCACGTTCCTGAAATGAATGCCATGCGTATGGTGGTACTTCTGCATGGTTCACTGGATCTGCTGCTCTCTGGGGTGTCACCACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGTTCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATGGCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGATTATCATTTG]


>consensus_3381#0 CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTC GCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACA TCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACC CTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGAC GCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGG ACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACA TCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACG AGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCA ACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCT GGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTG TGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCA TAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGA GCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTA AAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTA TTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAG GTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCT TCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGC TTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCTTGCTG ACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTGACT CAGATGAGTACGATGACTACTGTGACCCTTACCGCTACCTTGATGGTGTCTATGAGGGCG TCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCACGTTC CTGAAATGAATGCCATGCGTATGGTGGTACTTCTGCATGGTTCACTGGATCTGCTGCTCT CTGGGGTGTCACCACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGTTCCCTCTGAAT TCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATGGCACACTTCTA TCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGATTATCATTTG



consensusID : consensus_3381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 827
fasta sequence
                              [GGCCTTCTGGGGCGAGTACGCGCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTCTGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAGTAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGAATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCAAGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCATTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAGGATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCTTCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTGCTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGANGACGAGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACATGGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAATCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG]

[+] EMBL CA767248             [GGCCTTCTGGGGCGAGTACGCGCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTCTGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAGTAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGAATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCAAGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCATTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAGGATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCTTCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGCTTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTGCTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTGACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGANGACGAGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACATGGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAATCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG]


>consensus_3381#1 GGCCTTCTGGGGCGAGTACGCGCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCA CCATGTCTGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCA GCAGCAGTAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTA GGTGAGAATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGA TTGAGCAAGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCC CTGGGCATTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGC AACGAAGGATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGC CATTGCTTCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACA CTGAGGCTTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGG TCGGGTGCTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTAT ATTCTTGACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGT ATATGANGACGAGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACATGGTNCT GGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAATCGATT CTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3381#0      CCGACTCTTTCTCCGTTCCGCTTCCCACCGCCATGCCTTCCTCCGCCGCCTCTCGCCGTC 60
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      GCCGCCACCGCCACCGCCACGCCGGCAAGCCCGACTACCCACCGTCGGAGCTGCCGGACA 120
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      TCCTCCGCGTCCGCGAGCTCCGCCTTGCCCCTCGCGCCTCTTCTCTCCCAAACCCTAACC 180
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      CTCACAAACCCCAGCCCCACCCCACGATTCCCTCCTCCACCACCACCACCACCTCTGGAC 240
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      GCCGTCGCAACCGCCGTGGCCGTGGACGCGGCCGCGGGCGCAAGGAGGGGGATGCGAGGG 300
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      ACTGGGCGGGGGGGCTGCCGCTGGACGCGATCCTGGCCATCTTCCACAAGCTCGACCACA 360
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      TCGAGATCCTGATGGGGGCCGGGCAGGTGTGCCGCTCCTGGCGCCGCGCCGCGCGCGACG 420
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      AGCCCCAGCTCTGGCGGCGCATCGACATGCGCGGCCACGCCGACCTCTCCTTCGAGCTCA 480
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      ACCTCTTCGGGATGGCGCAGGCCGCTGTGCGCCGCAGCGCGGGTCAGTGCGAGGCCTTCT 540
consensus_3381#1      ----------------------------------------------------GGCCTTCT 8
                                                                          ********

consensus_3381#0      GGGGCGAGTACGCCGCCGACGAAAAATTGCTCCATTTCCTCGGCGAACGAGCACCATCTG 600
consensus_3381#1      GGGGCGAGTACGC-GCCGACGAAGATTTGCTCCATTTCCTCGGAGATCGGGCACCATGTC 67
                      ************* ********* * ***************** ** ** ******* * 

consensus_3381#0      TGAAGAGTCTTCGTCTGATCTCTTGCTATGATATCCTCAATGAAGGATTTTCAGCAGCCA 660
consensus_3381#1      TGAAGAGTCTTCGTCTCATCTCTTGTTTTGATATCCTTGATGAAGGATTTTCAGCAGCAG 127
                      **************** ******** * *********  *******************  

consensus_3381#0      TAAAGAAGTTTCCACTGCTTGAGGAGCTTGAGCTTTCGCTTTGTTCAAATATAGGTGAGA 720
consensus_3381#1      TAAAGAAGTTTCCACTACTTGAGGAGCTTGAGCTTACGCTATGTGATAATTTAGGTGAGA 187
                      **************** ****************** **** ***   *** *********

consensus_3381#0      GCAATGTGTTTGAGATTGTTGGCAAAGCATGCCCACAGCTGAAGCGCTTCAGATTTAGTA 780
consensus_3381#1      ATGATGTGTTTAAGGCTGTCGGCAAAGCATGCCCGCAGCTGAAGCGCTTCAGATTGAGCA 247
                         ******** **  *** ************** ******************** ** *

consensus_3381#0      AAGACTGCTTCTACAGCTTTGAAGATAATGAATACGAGATGGACGAGGAAGCCCTAGGTA 840
consensus_3381#1      AGAGGTGCTTCTACAATTATAAACATAGTGGGTACAACAAGGATGAGCAAGCCCTGGGCA 307
                      *    **********  * * ** *** **  *** * * *** *** ******* ** *

consensus_3381#0      TTGCAACTATGCATGAGCTACGGTCTCTGCAGCTTTTTGCTAATAATCTCAGGAATGAAG 900
consensus_3381#1      TTGCAACTATGCATGAGCTACGTTCTCTGCAGCTTTTTGCTAATAATCTCAGCAACGAAG 367
                      ********************** ***************************** ** ****

consensus_3381#0      GTCTGGCAGCTATCCTTGACAACTGCCCCTACCTGGAATCCCTCGACATTCGTCATTGCT 960
consensus_3381#1      GATTGACAGCAATCCTTGACAACTGCCCCTTCCTGGAATCCCTTGACATTCGCCATTGCT 427
                      *  ** **** ******************* ************ ******** *******

consensus_3381#0      TCAATGTCAATATGGATGACACCCTGCGAGCAAAGTGTGCCAGGATCAAGACACTGAGGC 1020
consensus_3381#1      TCAATGTCAGTATGGATGACACCCTGCAAGCAAAGTGTGCCAGGATCAAGACACTGAGGC 487
                      ********* ***************** ********************************

consensus_3381#0      TTCCCTATGACTCAACTGATGACTATGACTTCCAAGTTCAGAAGCCTATCTCGCT---TG 1077
consensus_3381#1      TTCCCTATGACTCAACTGATGACTACGACTTCCAAGTTCATAAGCCTATCTGGTCGGGTG 547
                      ************************* ************** ********** *     **

consensus_3381#0      CTGACTTCTACTCTGACAGTGATGATGATTGTGTTTATGGTGGCCCCGACTATATTCTTG 1137
consensus_3381#1      CTGACTTCTTCTCTGATAGTGATGATGATTGCATTTATGGTGGCCCCGACTATATTCTTG 607
                      ********* ****** **************  ***************************

consensus_3381#0      ACTCAGATGAGTACGATGACTACTGTGACCCTTACCGCTACC-TTGATGGTGTCTATGAG 1196
consensus_3381#1      ACTCAGATGAGTATGACGATTACTGNGACCCTTACATCTACCCTTGATGGCGTATATGAN 667
                      ************* ** ** ***** *********  ***** ******* ** ***** 

consensus_3381#0      GGCGTCGCGTCAGGGCGAGCTCGATGAAGAAGATCGGATGATGCTCAAGACTATGCGCAC 1256
consensus_3381#1      GACG-------------AGCTTGATGAANAAGATCGGATGATGCTCAAGGCTATGCACAT 714
                      * **             **** ****** ******************** ****** ** 

consensus_3381#0      GTTCCTGAAATGA--ATGCCATGCGTATGGTGGTACTTCTG-CATGGTTCACTGGATCTG 1313
consensus_3381#1      GGTNCTGGAATGAGAATGNCNTGAGTATGCTGGGACTTTTGGCGGGGGTTACTCATTCAA 774
                      * * *** *****  *** * ** ***** *** **** ** *  ** * ***   **  

consensus_3381#0      CTGCTCT--CTGGGGTGTCACC--ACTTAATGGAAGATTGCTTAGCAACTTGGTTCCTGT 1369
consensus_3381#1      TCGATTCTGCTACTCTTCTATGGGACTTGACTGAATATTGNNTNAAAACTTGG------- 827
                        * *    **    *   *    **** *  *** ****  *   *******       

consensus_3381#0      TCCCTCTGAATTCGGTATGGTGGTGTATGACTATGTGCCTACAGCCAGAACAAGATAATG 1429
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      GCACACTTCTATCAGTATATGGTATGTTCCCCGGCCTAAAAAAAACGCTCGCGCTATGAT 1489
consensus_3381#1      ------------------------------------------------------------
                                                                                  

consensus_3381#0      TATCATTTG 1498
consensus_3381#1      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)