cluster # 3386

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Oryza sativa
cluster # 3386 cluster # 3386 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3386#0 length = 1798 sequences # 1

consensus_3386#1 length = 409 sequences # 1

consensusID : consensus_3386#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1798
fasta sequence

                              [CGCCGCCGCCGTGTTCTTTTTCCTCGCCACCGCCGCCGTGTTCCTCTTCCACCGCCGGACTTGTTCCTCTTCCGCCGCCGGACTTGTTTCCTCTCCCGCGCCGCCGCCGTTCCGTTTTTTCTCTCTCGCGCCGCCGCCAGACTTTATCCTCTCCCACGTCGCCAGCGTTCCCTTGTTGCTCTGCGCCGCCGCCGGGAACGACAACGACTTGGACGCCGCTGCCGCCGGGAACGATGACTCGAAACAGGTGAGCTGGTGGGGTTCTTCGGGGGAGCCAACATCCTGATGGAGTACGTGCTGTCGAACGCGGCGGTGGCGAGGAGCTTCACGGACTACCTGGCCTCGACGTGCGGGATCACGGAGCCGGACGCGTGGAGGATCCAGGTCGACGGCATCGCCAAGGGCTACAACGCGCTCGACTTCCCGGCCGTCGCGCTCATCCTTGTCCTAACTCTCTGCTTGTGCTACAGCACCAAGGAGAGCGCGATGCTGAACATGGTGATCACGGTGTTCCACCTGCTCTTCTTCGTGTTCATCATCCTGGCCGGCCTGTGGAACGGCAGCGCGCGGAACCTGGTGTCGCCGCACGGCCTGGCGCCCTACGGCGTCCGCGGCGTCCTCGACGGCGCCGCCATCGTCTACTTCAGCTACATCGGCTACGACTCGGCGTCCACCATGGCCGAGGAAATCCGCGACCCCGCCCGCGCCCTCCCCGTCGGCATCGCCGGCTCAGTCCTCGTCGTCTCCGCGCTCTACTGCCTCATGTCCCTCGCCCTCTGCGCCATGCTTCCCTACACCGAGATAGCGGAGAGCGCGCCGTTCTCGGCGGTGTTCAGGGAGAAGGCGGGGTGGGAGTGGGCGGGGAGCGTCGTCGGGGCCGGGGCGAGCCTGGGGATCGTGGCGTCGCTGCTGGTGGCGATGCTGGGGCAGGCGAGGTACCTGTGCGTCATCGCCAGAGCGCGGCTGGTGCCGGCGTGGCTGGCCAAGGTGCACCCTTCCACCGGCACTCCTATGAACGCCACCATCTTTCTAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCGACCGATCTCTGCATGTCCTCCTCTTCCTGCTCATCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTGCGCGGTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGCCGGCGGCTGCATCCGTCTTCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCATTTCAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTCTTCTATGTCTGCTATGGGGTGCACTCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAATATGGACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTAACTAGCTTGGCAATTAGGCTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCAAAAGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTTTTCCTGCTTTTGTGCTTGCAAATTGGCTTGTAACTTTTTTTTTTCTCAAAGTGTACATGCAGGACTGTGAATGGCATGTTTT]

[+] EMBL AK064289             [CGCCGCCGCCGTGTTCTTTTTCCTCGCCACCGCCGCCGTGTTCCTCTTCCACCGCCGGACTTGTTCCTCTTCCGCCGCCGGACTTGTTTCCTCTCCCGCGCCGCCGCCGTTCCGTTTTTTCTCTCTCGCGCCGCCGCCAGACTTTATCCTCTCCCACGTCGCCAGCGTTCCCTTGTTGCTCTGCGCCGCCGCCGGGAACGACAACGACTTGGACGCCGCTGCCGCCGGGAACGATGACTCGAAACAGGTGAGCTGGTGGGGTTCTTCGGGGGAGCCAACATCCTGATGGAGTACGTGCTGTCGAACGCGGCGGTGGCGAGGAGCTTCACGGACTACCTGGCCTCGACGTGCGGGATCACGGAGCCGGACGCGTGGAGGATCCAGGTCGACGGCATCGCCAAGGGCTACAACGCGCTCGACTTCCCGGCCGTCGCGCTCATCCTTGTCCTAACTCTCTGCTTGTGCTACAGCACCAAGGAGAGCGCGATGCTGAACATGGTGATCACGGTGTTCCACCTGCTCTTCTTCGTGTTCATCATCCTGGCCGGCCTGTGGAACGGCAGCGCGCGGAACCTGGTGTCGCCGCACGGCCTGGCGCCCTACGGCGTCCGCGGCGTCCTCGACGGCGCCGCCATCGTCTACTTCAGCTACATCGGCTACGACTCGGCGTCCACCATGGCCGAGGAAATCCGCGACCCCGCCCGCGCCCTCCCCGTCGGCATCGCCGGCTCAGTCCTCGTCGTCTCCGCGCTCTACTGCCTCATGTCCCTCGCCCTCTGCGCCATGCTTCCCTACACCGAGATAGCGGAGAGCGCGCCGTTCTCGGCGGTGTTCAGGGAGAAGGCGGGGTGGGAGTGGGCGGGGAGCGTCGTCGGGGCCGGGGCGAGCCTGGGGATCGTGGCGTCGCTGCTGGTGGCGATGCTGGGGCAGGCGAGGTACCTGTGCGTCATCGCCAGAGCGCGGCTGGTGCCGGCGTGGCTGGCCAAGGTGCACCCTTCCACCGGCACTCCTATGAACGCCACCATCTTTCTAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCGACCGATCTCTGCATGTCCTCCTCTTCCTGCTCATCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTGCGCGGTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGCCGGCGGCTGCATCCGTCTTCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCATTTCAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTCTTCTATGTCTGCTATGGGGTGCACTCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAATATGGACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTAACTAGCTTGGCAATTAGGCTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCAAAAGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTTTTCCTGCTTTTGTGCTTGCAAATTGGCTTGTAACTTTTTTTTTTCTCAAAGTGTACATGCAGGACTGTGAATGGCATGTTTT]




>consensus_3386#0
CGCCGCCGCCGTGTTCTTTTTCCTCGCCACCGCCGCCGTGTTCCTCTTCCACCGCCGGAC
TTGTTCCTCTTCCGCCGCCGGACTTGTTTCCTCTCCCGCGCCGCCGCCGTTCCGTTTTTT
CTCTCTCGCGCCGCCGCCAGACTTTATCCTCTCCCACGTCGCCAGCGTTCCCTTGTTGCT
CTGCGCCGCCGCCGGGAACGACAACGACTTGGACGCCGCTGCCGCCGGGAACGATGACTC
GAAACAGGTGAGCTGGTGGGGTTCTTCGGGGGAGCCAACATCCTGATGGAGTACGTGCTG
TCGAACGCGGCGGTGGCGAGGAGCTTCACGGACTACCTGGCCTCGACGTGCGGGATCACG
GAGCCGGACGCGTGGAGGATCCAGGTCGACGGCATCGCCAAGGGCTACAACGCGCTCGAC
TTCCCGGCCGTCGCGCTCATCCTTGTCCTAACTCTCTGCTTGTGCTACAGCACCAAGGAG
AGCGCGATGCTGAACATGGTGATCACGGTGTTCCACCTGCTCTTCTTCGTGTTCATCATC
CTGGCCGGCCTGTGGAACGGCAGCGCGCGGAACCTGGTGTCGCCGCACGGCCTGGCGCCC
TACGGCGTCCGCGGCGTCCTCGACGGCGCCGCCATCGTCTACTTCAGCTACATCGGCTAC
GACTCGGCGTCCACCATGGCCGAGGAAATCCGCGACCCCGCCCGCGCCCTCCCCGTCGGC
ATCGCCGGCTCAGTCCTCGTCGTCTCCGCGCTCTACTGCCTCATGTCCCTCGCCCTCTGC
GCCATGCTTCCCTACACCGAGATAGCGGAGAGCGCGCCGTTCTCGGCGGTGTTCAGGGAG
AAGGCGGGGTGGGAGTGGGCGGGGAGCGTCGTCGGGGCCGGGGCGAGCCTGGGGATCGTG
GCGTCGCTGCTGGTGGCGATGCTGGGGCAGGCGAGGTACCTGTGCGTCATCGCCAGAGCG
CGGCTGGTGCCGGCGTGGCTGGCCAAGGTGCACCCTTCCACCGGCACTCCTATGAACGCC
ACCATCTTTCTAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTG
TTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATC
TACCACCGATACGCGAAGCTGGGTGCCGACCGATCTCTGCATGTCCTCCTCTTCCTGCTC
ATCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGA
TGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTGCGCG
GTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGCCG
GCGGCTGCATCCGTCTTCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCATTT
CAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTCTTCTATGTCTGCTATGGGGTGCAC
TCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAATATG
GACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTAAC
TAGCTTGGCAATTAGGCTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCAAA
AGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTTTTCCTGCTTTTGTGCTTGCAAATT
GGCTTGTAACTTTTTTTTTTCTCAAAGTGTACATGCAGGACTGTGAATGGCATGTTTT

consensusID : consensus_3386#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [GCAGCAATACTATTTCTGGCATTTCTTGAACTGCTCTTACAAATATCATCACCATTATCTATGCGCAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCTCATCTACCACCGATACGTGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCT]

[-] EMBL CA767286             [GCAGCAATACTATTTCTGGCATTTCTTGAACTGCTCTTACAAATATCATCACCATTATCTATGCGCAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCACCGATACGCGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCTCATCTACCACCGATACGTGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCT]




>consensus_3386#1
GCAGCAATACTATTTCTGGCATTTCTTGAACTGCTCTTACAAATATCATCACCATTATCT
ATGCGCAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAGTGTTCGA
GATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCATCTACCA
CCGATACGCGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCT
TACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCCGATGGGG
AATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCTCATCTACCACCGATACGTGA
AGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGCTCCTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3386#0      CGCCGCCGCCGTGTTCTTTTTCCTCGCCACCGCCGCCGTGTTCCTCTTCCACCGCCGGAC 60
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      TTGTTCCTCTTCCGCCGCCGGACTTGTTTCCTCTCCCGCGCCGCCGCCGTTCCGTTTTTT 120
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      CTCTCTCGCGCCGCCGCCAGACTTTATCCTCTCCCACGTCGCCAGCGTTCCCTTGTTGCT 180
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      CTGCGCCGCCGCCGGGAACGACAACGACTTGGACGCCGCTGCCGCCGGGAACGATGACTC 240
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      GAAACAGGTGAGCTGGTGGGGTTCTTCGGGGGAGCCAACATCCTGATGGAGTACGTGCTG 300
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      TCGAACGCGGCGGTGGCGAGGAGCTTCACGGACTACCTGGCCTCGACGTGCGGGATCACG 360
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      GAGCCGGACGCGTGGAGGATCCAGGTCGACGGCATCGCCAAGGGCTACAACGCGCTCGAC 420
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      TTCCCGGCCGTCGCGCTCATCCTTGTCCTAACTCTCTGCTTGTGCTACAGCACCAAGGAG 480
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      AGCGCGATGCTGAACATGGTGATCACGGTGTTCCACCTGCTCTTCTTCGTGTTCATCATC 540
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      CTGGCCGGCCTGTGGAACGGCAGCGCGCGGAACCTGGTGTCGCCGCACGGCCTGGCGCCC 600
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      TACGGCGTCCGCGGCGTCCTCGACGGCGCCGCCATCGTCTACTTCAGCTACATCGGCTAC 660
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      GACTCGGCGTCCACCATGGCCGAGGAAATCCGCGACCCCGCCCGCGCCCTCCCCGTCGGC 720
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      ATCGCCGGCTCAGTCCTCGTCGTCTCCGCGCTCTACTGCCTCATGTCCCTCGCCCTCTGC 780
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      GCCATGCTTCCCTACACCGAGATAGCGGAGAGCGCGCCGTTCTCGGCGGTGTTCAGGGAG 840
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      AAGGCGGGGTGGGAGTGGGCGGGGAGCGTCGTCGGGGCCGGGGCGAGCCTGGGGATCGTG 900
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      GCGTCGCTGCTGGTGGCGATGCTGGGGCAGGCGAGGTACCTGTGCGTCATCGCCAGAGCG 960
consensus_3386#1      ------------------------------------------------------GCAGCA 6
                                                                              *** 

consensus_3386#0      CGGCTGGTGCCGGCGTGGCTGGCCAAGGTGCACCCTTCCACCGGCACTCCTATGAACGCC 1020
consensus_3386#1      ATACTATTTCTGGCATTTCT--------TGAACTGCTCT-----TACAAATATCATCACC 53
                         **  * * *** *  **        ** **   **       **   *** * * **

consensus_3386#0      ACCATCTTTCT--AGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAG 1078
consensus_3386#1      ATTATCTATGCGCAGGATTGTGCACAGCATCAATCGCACTCTTCACAGAGCTGCAGGTAG 113
                      *  **** *    ***********************************************

consensus_3386#0      TGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCA 1138
consensus_3386#1      TGTTCGAGATGATATCAATCGGAACACTCCTGGTCTTCTACCTGGTCGCCAACGCGCTCA 173
                      ************************************************************

consensus_3386#0      TCTACCACCGATACGCGAAGCTGGGTGCCGACCGATCTCTGCATGTCCTCCTCTTCCTGC 1198
consensus_3386#1      TCTACCACCGATACGCGAAGCTGGGTGCCAACCGATCTCTGCATGTCCTCCTCTTCCTGC 233
                      ***************************** ******************************

consensus_3386#0      TCATCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCC 1258
consensus_3386#1      TCCTCCTTACACTGAGCTCCCTTGGCTTCTCCCTCTCGAGGAGGATCCATGGGCAATGCC 293
                      ** *********************************************************

consensus_3386#0      GATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTGCG 1318
consensus_3386#1      GATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGC--TCATCTACCAC- 350
                      **********************************************  *  ** **  * 

consensus_3386#0      CGGTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGC 1378
consensus_3386#1      CGATACGTGAAGCTGGGTGCCAACCGATCTCTGCATG--TCCTCCTCTTCCTGCTCCTCC 408
                      ** ****   **    *    * **    ** *  **  *  ***   *  ***     *

consensus_3386#0      CGGCGGCTGCATCCGTCTTCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCAT 1438
consensus_3386#1      T----------------------------------------------------------- 409
                                                                                  

consensus_3386#0      TTCAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTCTTCTATGTCTGCTATGGGGTGC 1498
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      ACTCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAATA 1558
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      TGGACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTA 1618
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      ACTAGCTTGGCAATTAGGCTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCA 1678
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      AAAGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTTTTCCTGCTTTTGTGCTTGCAAA 1738
consensus_3386#1      ------------------------------------------------------------
                                                                                  

consensus_3386#0      TTGGCTTGTAACTTTTTTTTTTCTCAAAGTGTACATGCAGGACTGTGAATGGCATGTTTT 1798
consensus_3386#1      ------------------------------------------------------------