These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [TGGCGTCGCGCCTCCGCTCCTTCTCCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATAGACGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACTCCGGTGCTGCCGCGCGCGGCAGACTTTCTAAGCCTTTTGTTTTCCTTCAATAATCGGTTTAATTAGTGTGGACTGCTGTATTCAGGGACATCCACAAATATGATAATATGTGCCTATGACCACATCTTACCTGGAAGCAATTGGTATTTTTTGCATTTCGTTTGAGTTAAA] [+] EMBL AK109235 [TGGCGTCGCGCCTCCGCTCCTTCTCCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATAGACGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACTCCGGTGCTGCCGCGCGCGGCAGACTTTCTAAGCCTTTTGTTTTCCTTCAATAATCGGTTTAATTAGTGTGGACTGCTGTATTCAGGGACATCCACAAATATGATAATATGTGCCTATGACCACATCTTACCTGGAAGCAATTGGTATTTTTTGCATTTCGTTTGAGTTAAA] consensusID : consensus_3406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [CTCTTCTCTCCCCTCTCCGGCCATGGCGTCGCGCCTCCGCTCCTTCACCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATGTGAGTTGTGACCGCACCCGGTTGCTTTGCTTTGATTTGCCTTGTTTGTTCTAGTTCATCTTGTGTCTAGATTCGGCTGGGCTGATGTAATTGTTGTCGGAATATGCTTAGTTTTAGTCATCAATAAAATCAAATTCGTT] [+] EMBL AK109187 [CTCTTCTCTCCCCTCTCCGGCCATGGCGTCGCGCCTCCGCTCCTTCACCCGCCCCGCCGCCGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGCTCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCCGCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCGGGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAATCTAATCTTTGCATCCTGCATGTGAGTTGTGACCGCACCCGGTTGCTTTGCTTTGATTTGCCTTGTTTGTTCTAGTTCATCTTGTGTCTAGATTCGGCTGGGCTGATGTAATTGTTGTCGGAATATGCTTAGTTTTAGTCATCAATAAAATCAAATTCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3406#0 -----------------------TGGCGTCGCGCCTCCGCTCCTTCTCCCGCCCCGCCGC 37 consensus_3406#1 CTCTTCTCTCCCCTCTCCGGCCATGGCGTCGCGCCTCCGCTCCTTCACCCGCCCCGCCGC 60 *********************** ************* consensus_3406#0 CGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGC 97 consensus_3406#1 CGCGTTCCTCCGCTCCGCCGCGGGACGGAGCCCGGCGGCCTCGCTGCCCCGAGCCGTCGC 120 ************************************************************ consensus_3406#0 TCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCC 157 consensus_3406#1 TCCCGTCACCAGGGCGGCGTCCGTGGGGCGGCTGGTGGGGCTCGCGAGGTCGCTGCAGCC 180 ************************************************************ consensus_3406#0 GCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCG 217 consensus_3406#1 GCTGCACAGCGCGGTGGCGGAGGCGCGGCTGACGTCGCGGCTCGGGGCGGAGGTGGCGCG 240 ************************************************************ consensus_3406#0 GGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAAT 277 consensus_3406#1 GGCCGTGTCGCAGGGTACGCTCTGCAGCTCCTTCCCGGGAGTCTGAGTCTGATATCAAAT 300 ************************************************************ consensus_3406#0 CTAATCTTTGCATCCTGCATAGACGGGTCTCAGCGTGCCTCGATAACGAAAGACGACACT 337 consensus_3406#1 CTAATCTTTGCATCCTGCAT-GTGAGTTGTGACCGCACCCGGTTG--------CTTTGCT 351 ******************** * * * * * ** ** * * * ** consensus_3406#0 CCGGTGCTGCCGCGCGCGGCAGACTTTCTAAGCCTTTTGTTTTCCTTCAAT--AATCGGT 395 consensus_3406#1 TTGAT-TTGCCTTGTTTGTTCTAGTTCAT----CTTGTGTCTAGATTCGGCTGGGCTGAT 406 * * **** * * * ** * *** *** * *** * * consensus_3406#0 TTAATTAGTGTGGACTGCTGTATTCAGGGACATCCACAAATATGATAATATGTGCCTATG 455 consensus_3406#1 GTAATTGTTGTCGG--AATATGCTTAGTTTTAGTCATCAATAAAATCAAATTCGTT---- 460 ***** *** * * * * ** * ** **** ** * ** * consensus_3406#0 ACCACATCTTACCTGGAAGCAATTGGTATTTTTTGCATTTCGTTTGAGTTAAA 508 consensus_3406#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||