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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1171 fasta sequence
[GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATATTGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGGTGGTGATGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTGATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAATTGACGCATAATTGTTCCAATGTCATTCAAAT]
[+] EMBL AK069945 [GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATATTGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGGTGGTGATGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTGATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAATTGACGCATAATTGTTCCAATGTCATTCAAAT]
consensusID : consensus_3408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence
[GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGATGATGCCGTCACAGATCC]
[+] EMBL CA767536 [GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTCCATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAACGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTAATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTTCGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCCGAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTACTTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGATGATGCCGTCACAGATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3408#0 GAAAAACTATCCTTTTTATTCAGTAACTAATGATCTTCGATTGTTCTATTAAAAAAATAT 60
consensus_3408#1 ------------------------------------------------------------
consensus_3408#0 TGGTCCTTGGCCATTTCCTAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTC 120
consensus_3408#1 -------GAGACAAGGGGGAATCTGAGTTGCATAAAACTACATATGTTCCCATGGTCTTC 53
* ** *****************************************
consensus_3408#0 CATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAA 180
consensus_3408#1 CATTGAGAGAAAATGGCAGATGATGGTTTCAAATATCATGAGGAATATGTTACAAATAAA 113
************************************************************
consensus_3408#0 CGAGGGATGAAGCT---TGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTA 237
consensus_3408#1 CGAGGGATGAAGCTCTTTGCATGCCAATGGAGTCCTTTAGACCATGAACCGAAAGCTCTA 173
************** *******************************************
consensus_3408#0 ATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTT 297
consensus_3408#1 ATCTTCCTATGCCATGGATATGCCATGGAATGCAGCATTTCAATGAGAGGAACAGGTGTT 233
************************************************************
consensus_3408#0 CGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATCAGGGCCATGGGAAGTCC 357
consensus_3408#1 CGGTTGGCAAAGGCTGGATTTACAGTGCACGGATTGGACTATGAGGGCCATGGGAAGTCC 293
****************************************** *****************
consensus_3408#0 GAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTAC 417
consensus_3408#1 GAAGGACTTCAAGGCTATATCAATAGTTTTGATGATGTTGTTGTTGATTGCTCGAACTAC 353
************************************************************
consensus_3408#0 TTTGCAAGTGTTTGTGAAAGAGGAGAGTGCAAAGGAAAAAAGAAGTTCCTTCTTGGTGAG 477
consensus_3408#1 TTTGCAAGTGTTTGTGGAAGAGGAGAGTGCAAAGGAAAAAAGAGGTTCCTTCTTGGTGAG 413
**************** ************************** ****************
consensus_3408#0 TCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGG 537
consensus_3408#1 TCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGG 473
************************************************************
consensus_3408#0 GCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTG 597
consensus_3408#1 GCTATTTTGGTTGCCCCCATGTGCAAGATTGTAGAAGATATGAAGCCTCGTCCCATTGTG 533
************************************************************
consensus_3408#0 ATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAA 657
consensus_3408#1 ATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAA 593
************************************************************
consensus_3408#0 GATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCA 717
consensus_3408#1 GATGTCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCA 653
************************************************************
consensus_3408#0 TATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTG 777
consensus_3408#1 TATTGCTATAAAGGAAGGCCTAGGTTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTG 713
************************************************************
consensus_3408#0 GATATTGAAAGCACTCTTGACAAGGTTACACTACCATTCATCATTGTCCATGG-TGGTGA 836
consensus_3408#1 GATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCATTGTCCATGGGTGGTGA 773
************************* *************************** ******
consensus_3408#0 TGATGCCGTCACAGATCCATCAGTAAGTGAAGAACTGTATACATCAGCTCAGAGCAAGGA 896
consensus_3408#1 TGATGCCGTCACAGATCC------------------------------------------ 791
******************
consensus_3408#0 CAAAACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAG 956
consensus_3408#1 ------------------------------------------------------------
consensus_3408#0 CAACATTGACATTGTATTTTTGGACATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTC 1016
consensus_3408#1 ------------------------------------------------------------
consensus_3408#0 ATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATATAGTCTCAGCAGATTG 1076
consensus_3408#1 ------------------------------------------------------------
consensus_3408#0 ATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGT 1136
consensus_3408#1 ------------------------------------------------------------
consensus_3408#0 CAATTGACGCATAATTGTTCCAATGTCATTCAAAT 1171
consensus_3408#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||