cluster # 3409

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3409 cluster # 3409 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3409#0 length = 541 sequences # 1

consensus_3409#1 length = 534 sequences # 1

consensusID : consensus_3409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [TCNNNAGCTCACTGCCCCGCGCCACGCGCGTCGCGTCCGCGCCGGCGAAACCAGCCATGAAAGAAGCCCTAGGAGGCGGCGCGGCGTCCACCCGGCGGCGGCGACAGCGCCGCCGTGTTCCGCCATGGCGANCGGCGCGGCGAGCCCTCGCTCGCCGCCAGCGGCGAAAAAACGGGCGGTGGTGGTGGCTGGCGACNGCGACAACTCCNACGTGTTCGACCGGCTCCCCGACGACATCGTCCTCGTCGTGCTCTCCAGGCTCGCCGCCAACGCCGCGTCCCCGCCGACGTCGCCTCGGCGGNACTCACGTNCANGAGGTTCCGGGAGCTCNCGACGCACCCGGCGGTGCTGTCNCGCGCGTCNGCGGNGGTCTTNTCNGTGCGGTGGGGCGCGTTGTCCGANGCNGCTCACCGTTCTTGCGGCGGTGCGCGGCCGCCGGGCACCTCCANCCTGCTACTTCCTCGGCATGGTGAGGTTCTNCNGCCTGGGGANCANGGCGACNGGGGCGGNNCTTCTTGGGCNCNCGNGGCNNNGGGNNNCN]

[+] EMBL BE229833             [TCNNNAGCTCACTGCCCCGCGCCACGCGCGTCGCGTCCGCGCCGGCGAAACCAGCCATGAAAGAAGCCCTAGGAGGCGGCGCGGCGTCCACCCGGCGGCGGCGACAGCGCCGCCGTGTTCCGCCATGGCGANCGGCGCGGCGAGCCCTCGCTCGCCGCCAGCGGCGAAAAAACGGGCGGTGGTGGTGGCTGGCGACNGCGACAACTCCNACGTGTTCGACCGGCTCCCCGACGACATCGTCCTCGTCGTGCTCTCCAGGCTCGCCGCCAACGCCGCGTCCCCGCCGACGTCGCCTCGGCGGNACTCACGTNCANGAGGTTCCGGGAGCTCNCGACGCACCCGGCGGTGCTGTCNCGCGCGTCNGCGGNGGTCTTNTCNGTGCGGTGGGGCGCGTTGTCCGANGCNGCTCACCGTTCTTGCGGCGGTGCGCGGCCGCCGGGCACCTCCANCCTGCTACTTCCTCGGCATGGTGAGGTTCTNCNGCCTGGGGANCANGGCGACNGGGGCGGNNCTTCTTGGGCNCNCGNGGCNNNGGGNNNCN]




>consensus_3409#0
TCNNNAGCTCACTGCCCCGCGCCACGCGCGTCGCGTCCGCGCCGGCGAAACCAGCCATGA
AAGAAGCCCTAGGAGGCGGCGCGGCGTCCACCCGGCGGCGGCGACAGCGCCGCCGTGTTC
CGCCATGGCGANCGGCGCGGCGAGCCCTCGCTCGCCGCCAGCGGCGAAAAAACGGGCGGT
GGTGGTGGCTGGCGACNGCGACAACTCCNACGTGTTCGACCGGCTCCCCGACGACATCGT
CCTCGTCGTGCTCTCCAGGCTCGCCGCCAACGCCGCGTCCCCGCCGACGTCGCCTCGGCG
GNACTCACGTNCANGAGGTTCCGGGAGCTCNCGACGCACCCGGCGGTGCTGTCNCGCGCG
TCNGCGGNGGTCTTNTCNGTGCGGTGGGGCGCGTTGTCCGANGCNGCTCACCGTTCTTGC
GGCGGTGCGCGGCCGCCGGGCACCTCCANCCTGCTACTTCCTCGGCATGGTGAGGTTCTN
CNGCCTGGGGANCANGGCGACNGGGGCGGNNCTTCTTGGGCNCNCGNGGCNNNGGGNNNC
N

consensusID : consensus_3409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [TCTCTCTCTCTCTCCATCGATCTCTCCTCCTCTCTCTCCAAAGCTCACTGCCCCCGCGCCACGCGCGTCGCGTCGCGCGCCGGCGAGCCAGCCATGAGGAGCCCTAGGAGGCGGCGCGGCGTCCACCCGGCGGCGGCGACGGCGCCGCCGTGTTCCGCCATGGCGAGCGGCGCGGCGAGCCCTCGCTCGCCGCCAGCGGCGAAGAAGCGGGCGGTGGTGGTGGCTGGCGACGGCGACGACTCCGACGTGTTCGACCGGCTCCCCGACAACATCGTCCTCGTCGTGCTCTCCAGGCTCGCCGCCAACGCCGCGTCCCCCGCCGACGTCGCCTCGGCGGCACTCACGTGCAGGAGGTTCCGGGAGCTCGCGACGCACCCGGCGGTGCTGTCGCGCGCGTCGGCGGCGGCCGTCGCGGTGCGGTGGGGCGCGTGGTCGGAGGCGGCTCACCGGTTCTTGCGGCGGTGCGCGGCCGCCGGCAGCCTCCACGCCTGCTACTTCCTCGGCATGGTGAGGTTCTACTGCCTGGGGAGCAGG]

[+] EMBL CB660378             [TCTCTCTCTCTCTCCATCGATCTCTCCTCCTCTCTCTCCAAAGCTCACTGCCCCCGCGCCACGCGCGTCGCGTCGCGCGCCGGCGAGCCAGCCATGAGGAGCCCTAGGAGGCGGCGCGGCGTCCACCCGGCGGCGGCGACGGCGCCGCCGTGTTCCGCCATGGCGAGCGGCGCGGCGAGCCCTCGCTCGCCGCCAGCGGCGAAGAAGCGGGCGGTGGTGGTGGCTGGCGACGGCGACGACTCCGACGTGTTCGACCGGCTCCCCGACAACATCGTCCTCGTCGTGCTCTCCAGGCTCGCCGCCAACGCCGCGTCCCCCGCCGACGTCGCCTCGGCGGCACTCACGTGCAGGAGGTTCCGGGAGCTCGCGACGCACCCGGCGGTGCTGTCGCGCGCGTCGGCGGCGGCCGTCGCGGTGCGGTGGGGCGCGTGGTCGGAGGCGGCTCACCGGTTCTTGCGGCGGTGCGCGGCCGCCGGCAGCCTCCACGCCTGCTACTTCCTCGGCATGGTGAGGTTCTACTGCCTGGGGAGCAGG]




>consensus_3409#1
TCTCTCTCTCTCTCCATCGATCTCTCCTCCTCTCTCTCCAAAGCTCACTGCCCCCGCGCC
ACGCGCGTCGCGTCGCGCGCCGGCGAGCCAGCCATGAGGAGCCCTAGGAGGCGGCGCGGC
GTCCACCCGGCGGCGGCGACGGCGCCGCCGTGTTCCGCCATGGCGAGCGGCGCGGCGAGC
CCTCGCTCGCCGCCAGCGGCGAAGAAGCGGGCGGTGGTGGTGGCTGGCGACGGCGACGAC
TCCGACGTGTTCGACCGGCTCCCCGACAACATCGTCCTCGTCGTGCTCTCCAGGCTCGCC
GCCAACGCCGCGTCCCCCGCCGACGTCGCCTCGGCGGCACTCACGTGCAGGAGGTTCCGG
GAGCTCGCGACGCACCCGGCGGTGCTGTCGCGCGCGTCGGCGGCGGCCGTCGCGGTGCGG
TGGGGCGCGTGGTCGGAGGCGGCTCACCGGTTCTTGCGGCGGTGCGCGGCCGCCGGCAGC
CTCCACGCCTGCTACTTCCTCGGCATGGTGAGGTTCTACTGCCTGGGGAGCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3409#0      ------------------------------------TCNNNAGCTCACTGCCCC-GCGCC 23
consensus_3409#1      TCTCTCTCTCTCTCCATCGATCTCTCCTCCTCTCTCTCCAAAGCTCACTGCCCCCGCGCC 60
                                                          **   ************* *****

consensus_3409#0      ACGCGCGTCGCGTC-CGCGCCGGCGAAACCAGCCATGAAAGAAGCCCTAGGAGGCGGCGC 82
consensus_3409#1      ACGCGCGTCGCGTCGCGCGCCGGCGAG-CCAGCCATGA--GGAGCCCTAGGAGGCGGCGC 117
                      ************** ***********  **********  * ******************

consensus_3409#0      GGCGTCCACCCGGCGGCGGCGACAGCGCCGCCGTGTTCCGCCATGGCGANCGGCGCGGCG 142
consensus_3409#1      GGCGTCCACCCGGCGGCGGCGACGGCGCCGCCGTGTTCCGCCATGGCGAGCGGCGCGGCG 177
                      *********************** ************************* **********

consensus_3409#0      AGCCCTCGCTCGCCGCCAGCGGCGAAAAAACGGGCGGTGGTGGTGGCTGGCGACNGCGAC 202
consensus_3409#1      AGCCCTCGCTCGCCGCCAGCGGCGAAGAAGCGGGCGGTGGTGGTGGCTGGCGACGGCGAC 237
                      ************************** ** ************************ *****

consensus_3409#0      AACTCCNACGTGTTCGACCGGCTCCCCGACGACATCGTCCTCGTCGTGCTCTCCAGGCTC 262
consensus_3409#1      GACTCCGACGTGTTCGACCGGCTCCCCGACAACATCGTCCTCGTCGTGCTCTCCAGGCTC 297
                       ***** *********************** *****************************

consensus_3409#0      GCCGCCAACGCCGCGTCCCC-GCCGACGTCGCCTCGGCGGNACTCACGTNCANGAGGTTC 321
consensus_3409#1      GCCGCCAACGCCGCGTCCCCCGCCGACGTCGCCTCGGCGGCACTCACGTGCAGGAGGTTC 357
                      ******************** ******************* ******** ** *******

consensus_3409#0      CGGGAGCTCNCGACGCACCCGGCGGTGCTGTCNCGCGCGTCNGCGGNGGTCTTNTCNGTG 381
consensus_3409#1      CGGGAGCTCGCGACGCACCCGGCGGTGCTGTCGCGCGCGTCGGCGGCGGCCGTCGCGGTG 417
                      ********* ********************** ******** **** ** * *  * ***

consensus_3409#0      CGGTGGGGCGCGTTGTCCGANGCNGCTCACCG-TTCTTGCGGCGGTGCGCGGCCGCCGGG 440
consensus_3409#1      CGGTGGGGCGCGTGGTCGGAGGCGGCTCACCGGTTCTTGCGGCGGTGCGCGGCCGCCGGC 477
                      ************* *** ** ** ******** ************************** 

consensus_3409#0      CACCTCCAN-CCTGCTACTTCCTCGGCATGGTGAGGTTCTNCNGCCTGGGGANCANGGCG 499
consensus_3409#1      AGCCTCCACGCCTGCTACTTCCTCGGCATGGTGAGGTTCTACTGCCTGGGGAGCAGG--- 534
                        ******  ****************************** * ********* ** *   

consensus_3409#0      ACNGGGGCGGNNCTTCTTGGGCNCNCGNGGCNNNGGGNNNCN 541
consensus_3409#1      ------------------------------------------