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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1715 fasta sequence
[CATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGTGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAACAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAATTATGGGAGTTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGTTGGCCGAGACATACACAGTGATAAGGTAGGATGGGGCATGATTTCTATGGTTGATGCAGAGAGGAGGTTGCTGGCAAAGGCCCTAGAAGATACGGACAACCAACTATTTGTTTTGCTTTCTGACAGTTGTGTTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATCAAGACACAGTTTTCTTGACTGCTTTGATGATCCTGGGCCACATGGAGTATTTAGATACTCGAAGCATATGTTGCCAGAAGTTCGAGAGATTGATTTTAGAAAGGGCTCGCAGTGGTTCGCAATCAAGAGGCAACATGCAATGGTGGTGGTTGCGGATAGTCTGTATTACACAAAATTCAGGCGTTTCTGCAAGCCAGGAATGGAAGAGGGTCGCAATTGTTATGCAGATGAGCATTACTTGCCAACACTATTCCTTATGATGGACCCTGCTGGAATTGCTAATTGGTCTGTGACTTATGTTGATTGGTCTGAGGGAAAGTGGCATCCCAGGTCTTTCCGAGCTAAGGATGTAACTTATGAACTCCTCAAGAATATGACATCGGTTGACATCAGCTACCACATAACAAGTGATGAAAAGAAAGAGCTCTTGCAGAGGCCTTGCTTGTGGAATGGACTAAAGAGACCATGCTACTTGTTTGCAAGGAAGTTCTACCCAGAAACTTTGAACAATCTCATGTACTTATTCTCTAACTACACCATTTTCTAAGCTCTAACGGGAAAATCCTCACATATTGGAAGCACTTGGTGCTTCAAAATTCTTTTGTACATCGCGGGAGAAGCAAATTTATTTACACTAATTGGGTATAGAAATAGGGGAAGTATTGGATTCTACTGCAGCAATATTAGGGTATTGTGGCCATGGGTATAGTTTAGGATTATATTATTTAAATTTCTTAGTTTTTCAGGGTTCTTTGTCTTCCTACAAACGTTGTTCATTCTGGCAAATTTTGCCACTATCAGTTTTCTCTTATAGCCCAGTTATAGAATTTTGCCACTTATCCATGCACAAAAAATGTGTGTAAATGGAATTCTATGTATTCTCTATTCATCCTGTATGCTTGTATTCTACAGAGGGATAACAAAAAAGTTTTGCAA]
[+] EMBL AK071700 [CATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGTGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAACAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAATTATGGGAGTTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGTTGGCCGAGACATACACAGTGATAAGGTAGGATGGGGCATGATTTCTATGGTTGATGCAGAGAGGAGGTTGCTGGCAAAGGCCCTAGAAGATACGGACAACCAACTATTTGTTTTGCTTTCTGACAGTTGTGTTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATCAAGACACAGTTTTCTTGACTGCTTTGATGATCCTGGGCCACATGGAGTATTTAGATACTCGAAGCATATGTTGCCAGAAGTTCGAGAGATTGATTTTAGAAAGGGCTCGCAGTGGTTCGCAATCAAGAGGCAACATGCAATGGTGGTGGTTGCGGATAGTCTGTATTACACAAAATTCAGGCGTTTCTGCAAGCCAGGAATGGAAGAGGGTCGCAATTGTTATGCAGATGAGCATTACTTGCCAACACTATTCCTTATGATGGACCCTGCTGGAATTGCTAATTGGTCTGTGACTTATGTTGATTGGTCTGAGGGAAAGTGGCATCCCAGGTCTTTCCGAGCTAAGGATGTAACTTATGAACTCCTCAAGAATATGACATCGGTTGACATCAGCTACCACATAACAAGTGATGAAAAGAAAGAGCTCTTGCAGAGGCCTTGCTTGTGGAATGGACTAAAGAGACCATGCTACTTGTTTGCAAGGAAGTTCTACCCAGAAACTTTGAACAATCTCATGTACTTATTCTCTAACTACACCATTTTCTAAGCTCTAACGGGAAAATCCTCACATATTGGAAGCACTTGGTGCTTCAAAATTCTTTTGTACATCGCGGGAGAAGCAAATTTATTTACACTAATTGGGTATAGAAATAGGGGAAGTATTGGATTCTACTGCAGCAATATTAGGGTATTGTGGCCATGGGTATAGTTTAGGATTATATTATTTAAATTTCTTAGTTTTTCAGGGTTCTTTGTCTTCCTACAAACGTTGTTCATTCTGGCAAATTTTGCCACTATCAGTTTTCTCTTATAGCCCAGTTATAGAATTTTGCCACTTATCCATGCACAAAAAATGTGTGTAAATGGAATTCTATGTATTCTCTATTCATCCTGTATGCTTGTATTCTACAGAGGGATAACAAAAAAGTTTTGCAA]
consensusID : consensus_3410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[GACCAATTTTTCTCGGCCTCCTCCTCCTGCCCTGCGCCACTCACTCCACCCGGATCCTGCATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGNGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAGCAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAANTATGGGAGNTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGGTGGCCGAGACATACACAGTGATACNGACAACCNACTATTTGGTTTTGCTTTCTGACAGATGTGGTTCCCTTACACAATTTTGACTATGNGTATGACTTCTTGATGGGATCAAGANACAGNTTTCTTGACTGCTTTG]
[+] EMBL CA767558 [GACCAATTTTTCTCGGCCTCCTCCTCCTGCCCTGCGCCACTCACTCCACCCGGATCCTGCATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAGAAGCAAGGTGGAAGCTGNGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATGAAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCATCAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAGCAGCTCCAAGAAGGCACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTATACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTCCTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGACAAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGACTCCTGGCAAGTTGCCATTTGAGAAANTATGGGAGNTATTTTTTAAGGGCCATGAAGGGAGGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTGGTGGCCGAGACATACACAGTGATACNGACAACCNACTATTTGGTTTTGCTTTCTGACAGATGTGGTTCCCTTACACAATTTTGACTATGNGTATGACTTCTTGATGGGATCAAGANACAGNTTTCTTGACTGCTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3410#0 -----------------------------------------------------------C 1
consensus_3410#1 GACCAATTTTTCTCGGCCTCCTCCTCCTGCCCTGCGCCACTCACTCCACCCGGATCCTGC 60
*
consensus_3410#0 ATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAG 61
consensus_3410#1 ATGCGCACGCCGGGCGCTTCCCTCTCGGATCGGCCAATCGGACGCACAGAGCACTTGCAG 120
************************************************************
consensus_3410#0 AAGCAAGGTGGAAGCTGTGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATG 121
consensus_3410#1 AAGCAAGGTGGAAGCTGNGTTAAGATTGTTTTCTAGGTCCGGTGAATTCTGAGAGAGATG 180
***************** ******************************************
consensus_3410#0 AAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCAT 181
consensus_3410#1 AAGGTGCGGAGCTGTACTGTGAGAGGAAGAAAAGAGTGAAGTGGCATCAGCTGTGGCCAT 240
************************************************************
consensus_3410#0 CAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAACAGCTCCAAGAAGGC 241
consensus_3410#1 CAAGTGCCAAGGATATGAAGGTTGTTCCAGTGCCGCGTGCAAGAGCAGCTCCAAGAAGGC 300
******************************************** ***************
consensus_3410#0 ACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTAT 301
consensus_3410#1 ACATATGGATACCAGTGATTCTAATTCTTGTTGCCGTCACCGTGCTATGGATTTACTTAT 360
************************************************************
consensus_3410#0 ACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTC 361
consensus_3410#1 ACCCTCCACAGGATTATACCTATCCTGTTAGGGATTGGTATCCTGTTAGGGACTGGTTTC 420
************************************************************
consensus_3410#0 CTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGAC 421
consensus_3410#1 CTGCAGAACCTGCCCGGGAACTGACCGATGAGGAGACTGCCGCTCGAGTTGTCTTTAGAC 480
************************************************************
consensus_3410#0 AAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGA 481
consensus_3410#1 AAATCCTCTCAACGCCTCCATTCCCATCCAGGAACCCCAAAATCGCTTTCATGTTCTTGA 540
************************************************************
consensus_3410#0 CTCCTGGCAAGTTGCCATTTGAGAAATTATGGGAGTTATTTTTTAAGGGCCATGAAGGGA 541
consensus_3410#1 CTCCTGGCAAGTTGCCATTTGAGAAANTATGGGAGNTATTTTTTAAGGGCCATGAAGGGA 600
************************** ******** ************************
consensus_3410#0 GGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTG 601
consensus_3410#1 GGTACACTATATATGTTCATGCTTCACGTGAGAAACCCGAACATGTCAGTCCTGTATTTG 660
************************************************************
consensus_3410#0 TTGGCCGAGACATACACAGTGATAAGGTAGGATGGGGCATGATTTCTATGGTTGATGCAG 661
consensus_3410#1 GTGGCCGAGACATACACAGTGATA------------------------------------ 684
***********************
consensus_3410#0 AGAGGAGGTTGCTGGCAAAGGCCCTAGAAGATACGGACAACCAACTATTTG-TTTTGCTT 720
consensus_3410#1 ---------------------------------CNGACAACCNACTATTTGGTTTTGCTT 711
* ******* ******** ********
consensus_3410#0 TCTGACAGTTGTG-TTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATC 779
consensus_3410#1 TCTGACAGATGTGGTTCCCTTACACAATTTTGACTATGNGTATGACTTCTTGATGGGATC 771
******** **** ***** ****************** *** *****************
consensus_3410#0 AAGACACAGTTTTCTTGACTGCTTTGATGATCCTGGGCCACATGGAGTATTTAGATACTC 839
consensus_3410#1 AAGANACAGNTTTCTTGACTGCTTTG---------------------------------- 797
**** **** ****************
consensus_3410#0 GAAGCATATGTTGCCAGAAGTTCGAGAGATTGATTTTAGAAAGGGCTCGCAGTGGTTCGC 899
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 AATCAAGAGGCAACATGCAATGGTGGTGGTTGCGGATAGTCTGTATTACACAAAATTCAG 959
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 GCGTTTCTGCAAGCCAGGAATGGAAGAGGGTCGCAATTGTTATGCAGATGAGCATTACTT 1019
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 GCCAACACTATTCCTTATGATGGACCCTGCTGGAATTGCTAATTGGTCTGTGACTTATGT 1079
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 TGATTGGTCTGAGGGAAAGTGGCATCCCAGGTCTTTCCGAGCTAAGGATGTAACTTATGA 1139
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 ACTCCTCAAGAATATGACATCGGTTGACATCAGCTACCACATAACAAGTGATGAAAAGAA 1199
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 AGAGCTCTTGCAGAGGCCTTGCTTGTGGAATGGACTAAAGAGACCATGCTACTTGTTTGC 1259
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 AAGGAAGTTCTACCCAGAAACTTTGAACAATCTCATGTACTTATTCTCTAACTACACCAT 1319
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 TTTCTAAGCTCTAACGGGAAAATCCTCACATATTGGAAGCACTTGGTGCTTCAAAATTCT 1379
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 TTTGTACATCGCGGGAGAAGCAAATTTATTTACACTAATTGGGTATAGAAATAGGGGAAG 1439
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 TATTGGATTCTACTGCAGCAATATTAGGGTATTGTGGCCATGGGTATAGTTTAGGATTAT 1499
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 ATTATTTAAATTTCTTAGTTTTTCAGGGTTCTTTGTCTTCCTACAAACGTTGTTCATTCT 1559
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 GGCAAATTTTGCCACTATCAGTTTTCTCTTATAGCCCAGTTATAGAATTTTGCCACTTAT 1619
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 CCATGCACAAAAAATGTGTGTAAATGGAATTCTATGTATTCTCTATTCATCCTGTATGCT 1679
consensus_3410#1 ------------------------------------------------------------
consensus_3410#0 TGTATTCTACAGAGGGATAACAAAAAAGTTTTGCAA 1715
consensus_3410#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||