cluster # 3413

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Oryza sativa
cluster # 3413 cluster # 3413 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3413#0 length = 626 sequences # 1

consensus_3413#1 length = 323 sequences # 1

consensusID : consensus_3413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [GCCAATTCTTCCACCCCCCGCCNAGACCACAGATTGATAGCACCACCATTAACTATGCTGAGACTGTGNGCATGCACAGCTCTGAAGCCTTTTGTATGACAAGGATCAGGAGTTCAGGATGCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGTAATTTCTGTGTCCTGCAAAGGACGTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTTTTCAGAGAAGGTATTGCAATCTATATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTATTGCGTCTCTTATTTCTCTACCATGAGTGAATAGAGGATATGGCTACTGTTGATTGGAAATAGAAGATGAAGCTTTGAAGATCTGTTCTCTATGAACAGNTAAAATTCTGTAAACAGTGCTTGTGGTGCATCATTCTAAAAAGAAAGGAAACGAATGTTTTTGTNACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGAAGAAAGATGGAACAACTGCAAATCTGTGCACTACTACGACTATATATGGATTTGTTGTGTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTATCGACTGTTTGTATAAGAAATCAATAATACATGTGCAAAAAAAAANA]

[+] EMBL AU091511             [GCCAATTCTTCCACCCCCCGCCNAGACCACAGATTGATAGCACCACCATTAACTATGCTGAGACTGTGNGCATGCACAGCTCTGAAGCCTTTTGTATGACAAGGATCAGGAGTTCAGGATGCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGTAATTTCTGTGTCCTGCAAAGGACGTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTTTTCAGAGAAGGTATTGCAATCTATATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTATTGCGTCTCTTATTTCTCTACCATGAGTGAATAGAGGATATGGCTACTGTTGATTGGAAATAGAAGATGAAGCTTTGAAGATCTGTTCTCTATGAACAGNTAAAATTCTGTAAACAGTGCTTGTGGTGCATCATTCTAAAAAGAAAGGAAACGAATGTTTTTGTNACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGAAGAAAGATGGAACAACTGCAAATCTGTGCACTACTACGACTATATATGGATTTGTTGTGTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTATCGACTGTTTGTATAAGAAATCAATAATACATGTGCAAAAAAAAANA]




>consensus_3413#0
GCCAATTCTTCCACCCCCCGCCNAGACCACAGATTGATAGCACCACCATTAACTATGCTG
AGACTGTGNGCATGCACAGCTCTGAAGCCTTTTGTATGACAAGGATCAGGAGTTCAGGAT
GCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGTAATTTCTGTGTCCTGCAAAGGAC
GTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTTTTCAGAGAAGGTATTGCAATCTA
TATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTATTGCGTCTCTTATTTCTCTACCAT
GAGTGAATAGAGGATATGGCTACTGTTGATTGGAAATAGAAGATGAAGCTTTGAAGATCT
GTTCTCTATGAACAGNTAAAATTCTGTAAACAGTGCTTGTGGTGCATCATTCTAAAAAGA
AAGGAAACGAATGTTTTTGTNACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGAAGAA
AGATGGAACAACTGCAAATCTGTGCACTACTACGACTATATATGGATTTGTTGTGTTTTT
TTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTATCGACTGTTTGTATAAGAAAT
CAATAATACATGTGCAAAAAAAAANA

consensusID : consensus_3413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [CCACTTCCATTTACATGACTGTATCAGTTTCTGTAACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGGAGAAAGATGGAGCAACTGCAAATTTGTGCAGTACTACGACTATATATGGATTTGCTGTGTTTTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTGTTGACTGTTTGTATAAGAAATCAATAATACATGTGCATGTATTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF321443             [CCACTTCCATTTACATGACTGTATCAGTTTCTGTAACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGGAGAAAGATGGAGCAACTGCAAATTTGTGCAGTACTACGACTATATATGGATTTGCTGTGTTTTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTGTTGACTGTTTGTATAAGAAATCAATAATACATGTGCATGTATTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3413#1
CCACTTCCATTTACATGACTGTATCAGTTTCTGTAACTTGCAAGAATCAAACTGGAGAAG
GAAAAACAGGAGAAAGATGGAGCAACTGCAAATTTGTGCAGTACTACGACTATATATGGA
TTTGCTGTGTTTTTTTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTGTTGA
CTGTTTGTATAAGAAATCAATAATACATGTGCATGTATTAATTGTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3413#0      GCCAATTCTTCCACCCCCCGCCNAGACCACAGATTGATAGCACCACCATTAACTATGCTG 60
consensus_3413#1      ------------------------------------------------------------
                                                                                  

consensus_3413#0      AGACTGTGNGCATGCACAGCTCTGAAGCCTTTTGTATGACAAGGATCAGGAGTTCAGGAT 120
consensus_3413#1      ------------------------------------------------------------
                                                                                  

consensus_3413#0      GCAAGTCCACCATATGGATTGAATTTGGTGGCCGTGTAATTTCTGTGTCCTGCAAAGGAC 180
consensus_3413#1      ------------------------------------------------------------
                                                                                  

consensus_3413#0      GTTGCTGGTTTCTTTACGGCTGCTATGTTGCTACCTTTTCAGAGAAGGTATTGCAATCTA 240
consensus_3413#1      ------------------------------------------------------------
                                                                                  

consensus_3413#0      TATTCGCAAGGCTTTATCAGTTCATAGGCGGTGCTATTGCGTCTCTTATTTCTCTACCAT 300
consensus_3413#1      ------------------------------------------------------------
                                                                                  

consensus_3413#0      GAGTGAATAGAGGATATGGCTACTGTTGATTGGAAATAGAAGATGAAGCTTTGAAGATCT 360
consensus_3413#1      ------------------------------------------------------------
                                                                                  

consensus_3413#0      GTTCTCTATGAACAGNTAAAATTCTGTAAACAGTGCTTGTGGTGCATCATTCTAAAAAGA 420
consensus_3413#1      ----------------------------------------------CCACTTCCATTTAC 14
                                                                     ** *   *     

consensus_3413#0      AAGGAAACGAATGTTTTTGTNACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGAAGAA 480
consensus_3413#1      ATGACTGTATCAGTTTCTGTAACTTGCAAGAATCAAACTGGAGAAGGAAAAACAGGAGAA 74
                      * *         **** *** ********************************** ****

consensus_3413#0      AGATGGAACAACTGCAAATCTGTGCACTACTACGACTATATATGGATTTGTTGTGTTTTT 540
consensus_3413#1      AGATGGAGCAACTGCAAATTTGTGCAGTACTACGACTATATATGGATTTGCTGTGTTTTT 134
                      ******* *********** ****** *********************** *********

consensus_3413#0      TTT---GTGATGTATGTTGTAATTGATATTGTGAAATATTTATCGACTGTTTGTATAAGA 597
consensus_3413#1      TTTTTTGTGATGTATGTTGTAATTGATATTGTGAAATATTTGTTGACTGTTTGTATAAGA 194
                      ***   *********************************** * ****************

consensus_3413#0      AATCAATAATACATGTGCAAAAAAAAANA------------------------------- 626
consensus_3413#1      AATCAATAATACATGTGCATGTATTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 254
                      *******************   *  **                                 

consensus_3413#0      ------------------------------------------------------------
consensus_3413#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 314
                                                                                  

consensus_3413#0      ---------
consensus_3413#1      AAAAAAAAA 323