cluster # 3424

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Oryza sativa
cluster # 3424 cluster # 3424 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3424#0 length = 429 sequences # 1

consensus_3424#1 length = 376 sequences # 1

consensusID : consensus_3424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [GCCATAAAAATGCATTCTTTTGCACAAGCACAGGAGAAGAAAAAAAGATGGAATTTTTACTCCCCCCCTGCAGCATTCTCTCTAGTCTCTTCTTGGGATTTGATTCATCCTAGTTTAGCTAGCTATTGCTGCATGTATGCACACACCTTCCTTTCTTTATCTTTTCCGATGGGTGCCCAAATCGAGTAAAATTCTACTCCATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCCGCCGC]

[+] EMBL AU173821             [GCCATAAAAATGCATTCTTTTGCACAAGCACAGGAGAAGAAAAAAAGATGGAATTTTTACTCCCCCCCTGCAGCATTCTCTCTAGTCTCTTCTTGGGATTTGATTCATCCTAGTTTAGCTAGCTATTGCTGCATGTATGCACACACCTTCCTTTCTTTATCTTTTCCGATGGGTGCCCAAATCGAGTAAAATTCTACTCCATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCCGCCGC]




>consensus_3424#0
GCCATAAAAATGCATTCTTTTGCACAAGCACAGGAGAAGAAAAAAAGATGGAATTTTTAC
TCCCCCCCTGCAGCATTCTCTCTAGTCTCTTCTTGGGATTTGATTCATCCTAGTTTAGCT
AGCTATTGCTGCATGTATGCACACACCTTCCTTTCTTTATCTTTTCCGATGGGTGCCCAA
ATCGAGTAAAATTCTACTCCATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACC
GGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCA
CCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCG
AGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGG
CCCCGCCGC

consensusID : consensus_3424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [CCGAGGCGCTGGCGGCGGCGGCGGTCGGCGAGGAGGGAGCCAGCGGCGGCGCGGGGGGGAACCGGTGGCCGCTGCAGGAGACGCTGGCGCTGCTCAAGATCCGGTCGGACATGGACGCCGCGTTCCGGGACGCCACCCTCAAGGGCCCGCTCTGGGAGGAGGTCTCCAGGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCC]

[+] EMBL CB640197             [CCGAGGCGCTGGCGGCGGCGGCGGTCGGCGAGGAGGGAGCCAGCGGCGGCGCGGGGGGGAACCGGTGGCCGCTGCAGGAGACGCTGGCGCTGCTCAAGATCCGGTCGGACATGGACGCCGCGTTCCGGGACGCCACCCTCAAGGGCCCGCTCTGGGAGGAGGTCTCCAGGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGGCCCC]




>consensus_3424#1
CCGAGGCGCTGGCGGCGGCGGCGGTCGGCGAGGAGGGAGCCAGCGGCGGCGCGGGGGGGA
ACCGGTGGCCGCTGCAGGAGACGCTGGCGCTGCTCAAGATCCGGTCGGACATGGACGCCG
CGTTCCGGGACGCCACCCTCAAGGGCCCGCTCTGGGAGGAGGTCTCCAGGAAGCTGGCGG
AGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGT
ATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCT
TCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGG
TGACGTCGCTGGCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3424#0      GCCATAAAAATGCATTCTTTTGCACAAGCACAGGAGAAGAAAAAAAGATGGAATTTTTAC 60
consensus_3424#1      ------------------------------------------CCGAGGCGCTGGCGGCGG 18
                                                                   **  *          

consensus_3424#0      TCCCCCCCTGCAGCATTCTCTCTAGTCTCTTCTTGGGATTTGATTCATCCTAGTTTAGCT 120
consensus_3424#1      CGGCGGTCGGCGAGGAGGGAGCCAGCGGCGGCGCGGGGGGGAACCGGTGGCCGCTGCAGG 78
                         *   * **          * **   *  *  ***     *    *    * *     

consensus_3424#0      AGCTATTGCTGCATGTATGCACACACCTTCCTTTCTTTATCTTTTCCGATGGGTGCCCAA 180
consensus_3424#1      AGACGCTGGCGC---TGCTCAAGATCCGGTCGGACATGGACGCCGCGTTCCGGGACGCCA 135
                      **    **  **   *   **    **   *   * *   *    *     **  * * *

consensus_3424#0      ATCGAGTAAAATTCTACTCCATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACC 240
consensus_3424#1      CCC--TCAAGGGCCCGCTCTGGG-AGGAGGTCTCCAGGAAGCTGGCGGAGGAGGGTTACC 192
                        *    **    *  ***   * * *     * *  ***********************

consensus_3424#0      GGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCA 300
consensus_3424#1      GGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCA 252
                      ************************************************************

consensus_3424#0      CCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCG 360
consensus_3424#1      CCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCG 312
                      ************************************************************

consensus_3424#0      AGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGG 420
consensus_3424#1      AGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCAGCGCCATCGCCGGTGACGTCGCTGG 372
                      ************************************************************

consensus_3424#0      CCCCGCCGC 429
consensus_3424#1      CCCC----- 376
                      ****