cluster # 344

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Oryza sativa
cluster # 344 cluster # 344 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_344#0 length = 1394 sequences # 1

consensus_344#1 length = 522 sequences # 1

consensusID : consensus_344#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1394
fasta sequence

                              [CTCTGCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTTTTGGTGTGTGTTTTTGTTTCATGGTTGCCCTCTCGATCTTCATGGTCATGGGGCGACTTTGTCCTCCAGCGGAATCGATCGATCCACCCGTCCGTGGCCATAGCCGCCGTCGCCGGTCAATACATCATCCACGCAATTGTCCTGCTCCTCTCCCAAGAAAACCACGCAAGCGAGCTCCGCGGAAACCGATCTCCGCTGCCGACGACAAAATAGGCGATTTAGATGCAAGATTGGGGAACGGCGGGGAGGATTCCTGCTCCATGTTGATCTTCCGCAGCAGCCGTGACCGCGTCCATGTCCCCATCAGCCGCCATCCCGCCATCCGGCGGGGACGAGGGTCGCCCTCCTCCTCCCACCACCGCGCTCGCCTCCTGCCCTGTGCCGCGCCGTGCCGTTCCTCATCGTCGACAGCCTCTCCCGCAACCACGACGGCGCGCCGCAGCGGCGTCGGGGCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGCTCCCACCACCGCCGCCATCGGCTGCCGCACCTCCTCTCCTGCCTCGCCCCGCCGGCCTCCTCCCCACCTGCCGCTGCCCTGCCCGAATGAGGTGAAGAGTGAGAGAGAGGAGGAGGTGAGAAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGGTCCCACGCTGACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCTAAAATGAACGGTTTTGTAAGTTGAGGGATGTCCTATATCTGATTTTGTGGTTGGAGGATGATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCTTCCATAAATAGATTTCCACTATTAG]

[+] EMBL AK073603             [CTCTGCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTTTTGGTGTGTGTTTTTGTTTCATGGTTGCCCTCTCGATCTTCATGGTCATGGGGCGACTTTGTCCTCCAGCGGAATCGATCGATCCACCCGTCCGTGGCCATAGCCGCCGTCGCCGGTCAATACATCATCCACGCAATTGTCCTGCTCCTCTCCCAAGAAAACCACGCAAGCGAGCTCCGCGGAAACCGATCTCCGCTGCCGACGACAAAATAGGCGATTTAGATGCAAGATTGGGGAACGGCGGGGAGGATTCCTGCTCCATGTTGATCTTCCGCAGCAGCCGTGACCGCGTCCATGTCCCCATCAGCCGCCATCCCGCCATCCGGCGGGGACGAGGGTCGCCCTCCTCCTCCCACCACCGCGCTCGCCTCCTGCCCTGTGCCGCGCCGTGCCGTTCCTCATCGTCGACAGCCTCTCCCGCAACCACGACGGCGCGCCGCAGCGGCGTCGGGGCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGCTCCCACCACCGCCGCCATCGGCTGCCGCACCTCCTCTCCTGCCTCGCCCCGCCGGCCTCCTCCCCACCTGCCGCTGCCCTGCCCGAATGAGGTGAAGAGTGAGAGAGAGGAGGAGGTGAGAAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGGTCCCACGCTGACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCTAAAATGAACGGTTTTGTAAGTTGAGGGATGTCCTATATCTGATTTTGTGGTTGGAGGATGATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCTTCCATAAATAGATTTCCACTATTAG]




>consensus_344#0
CTCTGCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGC
GAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGG
CTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCAT
GGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTG
GCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGA
GAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCT
GCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCG
CCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCAT
CTTGAATATTGATATATACTCTGAATTTTGAGAGCTTTTGGTGTGTGTTTTTGTTTCATG
GTTGCCCTCTCGATCTTCATGGTCATGGGGCGACTTTGTCCTCCAGCGGAATCGATCGAT
CCACCCGTCCGTGGCCATAGCCGCCGTCGCCGGTCAATACATCATCCACGCAATTGTCCT
GCTCCTCTCCCAAGAAAACCACGCAAGCGAGCTCCGCGGAAACCGATCTCCGCTGCCGAC
GACAAAATAGGCGATTTAGATGCAAGATTGGGGAACGGCGGGGAGGATTCCTGCTCCATG
TTGATCTTCCGCAGCAGCCGTGACCGCGTCCATGTCCCCATCAGCCGCCATCCCGCCATC
CGGCGGGGACGAGGGTCGCCCTCCTCCTCCCACCACCGCGCTCGCCTCCTGCCCTGTGCC
GCGCCGTGCCGTTCCTCATCGTCGACAGCCTCTCCCGCAACCACGACGGCGCGCCGCAGC
GGCGTCGGGGCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGC
TCCCACCACCGCCGCCATCGGCTGCCGCACCTCCTCTCCTGCCTCGCCCCGCCGGCCTCC
TCCCCACCTGCCGCTGCCCTGCCCGAATGAGGTGAAGAGTGAGAGAGAGGAGGAGGTGAG
AAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGG
TCCCACGCTGACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCT
AAAATGAACGGTTTTGTAAGTTGAGGGATGTCCTATATCTGATTTTGTGGTTGGAGGATG
ATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCTTCCATAAATAG
ATTTCCACTATTAG

consensusID : consensus_344#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [GCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTAANANAAAAA]

[+] EMBL CA753728             [GCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTGAATATTGATATATACTCTGAATTTTGAGAGCTAANANAAAAA]




>consensus_344#1
GCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGCGAGC
TCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGGCTGA
CGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCATGGTG
CCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTGGCGG
GTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGAGAGC
ACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCTGCTG
CTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCGCCTA
CCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCATCTTG
AATATTGATATATACTCTGAATTTTGAGAGCTAANANAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_344#0      CTCTGCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGC 60
consensus_344#1      ----GCAGGGCGCCGGCGGGTGGGGAGGAGGCCGGCGGGGAGCTCCTCCTGCGTGGCCGC 56
                         ********************************************************

consensus_344#0      GAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGG 120
consensus_344#1      GAGCTCCGCGTCAAAGGGTGGTGGGTGCTGCCGGTCAAGGCGTACCACGCCGCGGGGCGG 116
                     ************************************************************

consensus_344#0      CTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCAT 180
consensus_344#1      CTGACGGGCGCCGCGTCCGCCATGCTTGCCGTCGCAACCTGCGGGATGCCTCTGCAGCAT 176
                     ************************************************************

consensus_344#0      GGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTG 240
consensus_344#1      GGTGCCGTTGCGCGGGGCCAAGCGCCGGAGGAGAAGGCTGCAATGGCGGCGGCCGCTGTG 236
                     ************************************************************

consensus_344#0      GCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGA 300
consensus_344#1      GCGGGTGGCGCGCCCGGAGCAGATCGCGAGGCGGACCGACGCCGATGCCGCGCCGGGGGA 296
                     ************************************************************

consensus_344#0      GAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCT 360
consensus_344#1      GAGCACAGCGCTGCGGGCGCGCTCCTACGGCTGCATCCGGGTGTTCCTCGTCCTATCCCT 356
                     ************************************************************

consensus_344#0      GCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCG 420
consensus_344#1      GCTGCTGCTCGCCGTCGAGATCGCCGCCTACCTCTAGGGGCCTTGCTCCCCCCGCCGCCG 416
                     ************************************************************

consensus_344#0      CCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCAT 480
consensus_344#1      CCTACCTCGGCCAGGAGGACAGGGGAGCGCCGTTTTCGTACCCAGCCACCAATACCCCAT 476
                     ************************************************************

consensus_344#0      CTTGAATATTGATATATACTCTGAATTTTGAGAGCTTTTGGTGTGTGTTTTTGTTTCATG 540
consensus_344#1      CTTGAATATTGATATATACTCTGAATTTTGAGAGCTAANANAAAAA-------------- 522
                     ************************************                        

consensus_344#0      GTTGCCCTCTCGATCTTCATGGTCATGGGGCGACTTTGTCCTCCAGCGGAATCGATCGAT 600
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      CCACCCGTCCGTGGCCATAGCCGCCGTCGCCGGTCAATACATCATCCACGCAATTGTCCT 660
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      GCTCCTCTCCCAAGAAAACCACGCAAGCGAGCTCCGCGGAAACCGATCTCCGCTGCCGAC 720
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      GACAAAATAGGCGATTTAGATGCAAGATTGGGGAACGGCGGGGAGGATTCCTGCTCCATG 780
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      TTGATCTTCCGCAGCAGCCGTGACCGCGTCCATGTCCCCATCAGCCGCCATCCCGCCATC 840
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      CGGCGGGGACGAGGGTCGCCCTCCTCCTCCCACCACCGCGCTCGCCTCCTGCCCTGTGCC 900
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      GCGCCGTGCCGTTCCTCATCGTCGACAGCCTCTCCCGCAACCACGACGGCGCGCCGCAGC 960
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      GGCGTCGGGGCAGACGGGCAGTTGGGCCTCCCCATGCTCCCCCTTCGCCTCCCCCCATGC 1020
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      TCCCACCACCGCCGCCATCGGCTGCCGCACCTCCTCTCCTGCCTCGCCCCGCCGGCCTCC 1080
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      TCCCCACCTGCCGCTGCCCTGCCCGAATGAGGTGAAGAGTGAGAGAGAGGAGGAGGTGAG 1140
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      AAAACAGTGAAAAGAGATTGGTGATGACGTGGACAGTCTGACAGATGGGCCCCATGTGGG 1200
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      TCCCACGCTGACTCAGCCGCCACGGCGGACAAAACCAGGGACAAAATCACCGAAGGACCT 1260
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      AAAATGAACGGTTTTGTAAGTTGAGGGATGTCCTATATCTGATTTTGTGGTTGGAGGATG 1320
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      ATTTTGAAATTTGATGACAAGTTGAGGGACCTTTGGTGTACTTTTTTCTTCCATAAATAG 1380
consensus_344#1      ------------------------------------------------------------
                                                                                 

consensus_344#0      ATTTCCACTATTAG 1394
consensus_344#1      --------------