Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 345 cluster # 345       Sequences # 2       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_345#0 length = 1384 sequences # 2  
consensusID : consensus_345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1384
fasta sequence 
                              [CCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACTCTCTCTCTCCTCGCGTGACTCGCGCGTGCCCTCGCCGCCGCCCTCGCCCACGCCGCCTCCCTCCCCCGCGCGCAACAGGCGGCGACGGTGCCGTCGCCGTCGTCCGCGGCGGCGCGATCGCCCCCGAGGATCCCTCCGCATCTAATCCCCTTACCCCGTCGCCCGCACCGCCCGTCGTCCCTCGCCGGCCGCTGTCCACCGATCCGAGTTTTCTCAAGAAATGGCTAGAGCTCCAAGAGACCGTACTCTATCAAGCCGGCGTGCTAGTTCAGCTACCAGTGCTGTACCTTCGTATTACCAGAAAACAAAAAAGGCATCCAAGGAAAATGGATTGCAACTAACCTCAGAGAAAAAGGACTGGAAACGTGCCACTTGCTCAATATGTTTGGAGCATCCACATAAAGCTGTTCTCCTCCTCTGTTCTTCTCACAGCAAAGGTTGTCGTCCGTACATGTGTGACACCAACCGTCAGCACTCTAATTGTCTTGAGCAGTTCAAAAATGCTTATTCGAGGGGAAAGCCAGCTTGTGAATTATCAGGTGCAGTGGCACAAGCTAGCAAGAAGCCACAGGAGATGGAGCTTGTGTGCCCTATCTGCCGTGGGGATGTTAAAGGATGGACAGTGGTTGAGCCAGCCAGAAGATTTCTCAACCGCAAGAGGAGGACTTGCATGCATGAGGGATGCTCTTTTGGTGGATCATACAGAAAACTCCGCAACCATGTGAGGTCCAATCATCCTTCATCAAATCCTCGTGAAATCGATTCTGCAAGCTTAGCTGAGTGGAAGGAGCTTGAATATGAGAAGGATAGGCAGGATGCAATAAGCATAATTACAGCATTGAATCCAGGGTCAACAATCATGGGGGACTATTTCATTGACCCCAACAGTGACAGCAACGACTCGTTTGACTATAGCTCTGACTCTTTGACATTCTCAGATAGTGATCCTGGAACTCAGCTTAATGGTTCCACTAGTTCTCGAAGGCCCGCTCGGATTATTCCTAATGCCCGTGTAAGATACTAAAGGGCCACAATTGACAGCTGAGAAATGGAACCATTTGAGCTTCAGCATTCTATCCTGTCCATGACGTGCTCTGATGCACTATAGGATGAATGGAGTGGCGCGTTTGTGAATGTCGTCTGGTTAGAATTTCATTCCCTTTTTTTTATCAAAGTAAATTAAGAAACAGGTTAGGCTAAAGACCACAGTTTAGTTAGTCGGTATTATGTCACGGGAAACAAAATGTAAATCCTGGTCTCGATTATGGTTAGTTAAGCAGTTACATGTGTTCTTCTTGTCCAGTGGATCTGCAACTTTCAGTGATAACAATGTGCTAGCAGT]

[+] EMBL AK108771             [CCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACTCTCTCTCTCCTCGCGTGACTCGCGCGTGCCCTCGCCGCCGCCCTCGCCCACGCCGCCTCCCTCCCCCGCGCGCAACAGGCGGCGACGGTGCCGTCGCCGTCGTCCGCGGCGGCGCGATCGCCCCCGAGGATCCCTCCGCATCTAATCCCCTTACCCCGTCGCCCGCACCGCCCGTCGTCCCTCGCCGGCCGCTGTCCACCGATCCGAGTTTTCTCAAGAAATGGCTAGAGCTCCAAGAGACCGTACTCTATCAAGCCGGCGTGCTAGTTCAGCTACCAGTGCTGTACCTTCGTATTACCAGAAAACAAAAAAGGCATCCAAGGAAAATGGATTGCAACTAACCTCAGAGAAAAAGGACTGGAAACGTGCCACTTGCTCAATATGTTTGGAGCATCCACATAAAGCTGTTCTCCTCCTCTGTTCTTCTCACAGCAAAGGTTGTCGTCCGTACATGTGTGACACCAACCGTCAGCACTCTAATTGTCTTGAGCAGTTCAAAAATGCTTATTCGAGGGGAAAGCCAGCTTGTGAATTATCAGGTGCAGTGGCACAAGCTAGCAAGAAGCCACAGGAGATGGAGCTTGTGTGCCCTATCTGCCGTGGGGATGTTAAAGGATGGACAGTGGTTGAGCCAGCCAGAAGATTTCTCAACCGCAAGAGGAGGACTTGCATGCATGAGGGATGCTCTTTTGGTGGATCATACAGAAAACTCCGCAACCATGTGAGGTCCAATCATCCTTCATCAAATCCTCGTGAAATCGATTCTGCAAGCTTAGCTGAGTGGAAGGAGCTTGAATATGAGAAGGATAGGCAGGATGCAATAAGCATAATTACAGCATTGAATCCAGGGTCAACAATCATGGGGGACTATTTCATTGACCCCAACAGTGACAGCAACGACTCGTTTGACTATAGCTCTGACTCTTTGACATTCTCAGATAGTGATCCTGGAACTCAGCTTAATGGTTCCACTAGTTCTCGAAGGCCCGCTCGGATTATTCCTAATGCCCGTGTAAGATACTAAAGGGCCACAATTGACAGCTGAGAAATGGAACCATTTGAGCTTCAGCATTCTATCCTGTCCATGACGTGCTCTGATGCACTATAGGATGAATGGAGTGGCGCGTTTGTGAATGTCGTCTGGTTAGAATTTCATTCCCTTTTTTTTATCAAAGTAAATTAAGAAACAGGTTAGGCTAAAGACCACAGTTTAGTTAGTCGGTATTATGTCACGGGAAACAAAATGTAAATCCTGGTCTCGATTATGGTTAGTTAAGCAGTTACATGTGTTCTTCTTGTCCAGTGGATCTGCAACTTTCAGTGATAACAATGTGCTAGCAGT]
[+] EMBL CA764340             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               nggacgagaCAAGGGGAGGACTTGCATGCATGAGGGATGCTCTTTTGGTGGATCATACAGAAAACTCCGCAACCATGTGAGGTCCAATCATCCTTCATCAAATCCTCGTGAAATCGATTCTGCAAGCTTAGCTGAGTGGAAGGAGCTTGAATATGAGAAGGATAGGCAGGATGCAATAAGCATAATTACAGCATTGAATCCAGGGTCAACAATCATGGGGGACTATTTCATTGACCCCAACGGTGACAGCAACGACTCGTTTGATTATAGCTCTGACTCTTTGACATTCTCAGATAGTGATCCTGGAACTCAGCTTAATGGTTCCACTAGTTCTCGAAGGCCCGCTCGGATTATTCCTAATGCCCGTGTAAGATACTAAAGGGCCACAATTGACAGCTGAGAAATGGAACCATTTGAGCTTCAGCATTCTATCCTGTCCATGACGTGCTCTGATGCACTATAGGATGAATGGAGTGGCGCGTTTGTGAATGTCGTCTGGTTAGAATTTCATTCCCTTTTTTTTATCAAAGTAAATTAAGAAACAGGTTAGGCTAAAGACCACAGTTTAGTTAGTCGGTATTATGTCACGGGAAACAAAATGTAAATCCTGGTCTCGATTATGGTTAGNTAAGCAGNTACATGTGTTCTTCTTGTCCAGTGGATCTGCAACTTTCAGTG                   ]




>consensus_345#0
CCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACTCTCTCTCTCCTCGCGTGA
CTCGCGCGTGCCCTCGCCGCCGCCCTCGCCCACGCCGCCTCCCTCCCCCGCGCGCAACAG
GCGGCGACGGTGCCGTCGCCGTCGTCCGCGGCGGCGCGATCGCCCCCGAGGATCCCTCCG
CATCTAATCCCCTTACCCCGTCGCCCGCACCGCCCGTCGTCCCTCGCCGGCCGCTGTCCA
CCGATCCGAGTTTTCTCAAGAAATGGCTAGAGCTCCAAGAGACCGTACTCTATCAAGCCG
GCGTGCTAGTTCAGCTACCAGTGCTGTACCTTCGTATTACCAGAAAACAAAAAAGGCATC
CAAGGAAAATGGATTGCAACTAACCTCAGAGAAAAAGGACTGGAAACGTGCCACTTGCTC
AATATGTTTGGAGCATCCACATAAAGCTGTTCTCCTCCTCTGTTCTTCTCACAGCAAAGG
TTGTCGTCCGTACATGTGTGACACCAACCGTCAGCACTCTAATTGTCTTGAGCAGTTCAA
AAATGCTTATTCGAGGGGAAAGCCAGCTTGTGAATTATCAGGTGCAGTGGCACAAGCTAG
CAAGAAGCCACAGGAGATGGAGCTTGTGTGCCCTATCTGCCGTGGGGATGTTAAAGGATG
GACAGTGGTTGAGCCAGCCAGAAGATTTCTCAACCGCAAGAGGAGGACTTGCATGCATGA
GGGATGCTCTTTTGGTGGATCATACAGAAAACTCCGCAACCATGTGAGGTCCAATCATCC
TTCATCAAATCCTCGTGAAATCGATTCTGCAAGCTTAGCTGAGTGGAAGGAGCTTGAATA
TGAGAAGGATAGGCAGGATGCAATAAGCATAATTACAGCATTGAATCCAGGGTCAACAAT
CATGGGGGACTATTTCATTGACCCCAACAGTGACAGCAACGACTCGTTTGACTATAGCTC
TGACTCTTTGACATTCTCAGATAGTGATCCTGGAACTCAGCTTAATGGTTCCACTAGTTC
TCGAAGGCCCGCTCGGATTATTCCTAATGCCCGTGTAAGATACTAAAGGGCCACAATTGA
CAGCTGAGAAATGGAACCATTTGAGCTTCAGCATTCTATCCTGTCCATGACGTGCTCTGA
TGCACTATAGGATGAATGGAGTGGCGCGTTTGTGAATGTCGTCTGGTTAGAATTTCATTC
CCTTTTTTTTATCAAAGTAAATTAAGAAACAGGTTAGGCTAAAGACCACAGTTTAGTTAG
TCGGTATTATGTCACGGGAAACAAAATGTAAATCCTGGTCTCGATTATGGTTAGTTAAGC
AGTTACATGTGTTCTTCTTGTCCAGTGGATCTGCAACTTTCAGTGATAACAATGTGCTAG
CAGT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)