These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [ACTTGGGCACCTTCTTTAGCCCTTTCTATTGTCCCATGCTAATACACATATTTAACCCCGCCATCCAATTCCCCTGTTCGTTCCAGTTCCAGCACCCACTTGCTGGCCAGCTGCGAGCACCTTGCTTAGTCCTTACCGAACCAGGTGTTGTAACCGAGGACCTTGCGGCTCGCCATGTAGATGTTGGCACCGAGGGTAGCCCACATAACCATATAGTAAGGGGTGAGCACCAAGTTGCTGCCAGGCTTGATCCTCCAGATGCGGGTGTGGGCGCGATAGGCTTGCTGGTAGAAGCGCTGGTGCTCGGGCACCGGGTTGTGCTTGTTCACGAGACCGGCCATCTTTTCCGTTTTGTGAGGAGTGGAGTGGTTGTTTCGGGGAGGTA] [+] EMBL BI306459 [ACTTGGGCACCTTCTTTAGCCCTTTCTATTGTCCCATGCTAATACACATATTTAACCCCGCCATCCAATTCCCCTGTTCGTTCCAGTTCCAGCACCCACTTGCTGGCCAGCTGCGAGCACCTTGCTTAGTCCTTACCGAACCAGGTGTTGTAACCGAGGACCTTGCGGCTCGCCATGTAGATGTTGGCACCGAGGGTAGCCCACATAACCATATAGTAAGGGGTGAGCACCAAGTTGCTGCCAGGCTTGATCCTCCAGATGCGGGTGTGGGCGCGATAGGCTTGCTGGTAGAAGCGCTGGTGCTCGGGCACCGGGTTGTGCTTGTTCACGAGACCGGCCATCTTTTCCGTTTTGTGAGGAGTGGAGTGGTTGTTTCGGGGAGGTA] consensusID : consensus_3450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [GTAGGGCACCTTCTTTAGGGCTTACTATCGTACCATGCTTATACACATATTTAACCCCGTGCTCCAATTGCCCTGTGTGTGACAGTGCCATCACCCACTTGCTGGCCACGCTGTGAGCACCTTGCTTAGTCCTTACCGAACCATGTGGTTGCCTACCGAGGACACTTGCCGCTCATCATGTACATGTTGGTACCTAGGGTAGCCCACATAACCATATACTAAGGGGTGAGCACCATAATTGATGCCAGGCTTGATCCTGCAAAGCCGGTGTGGGCACTATACGCTTGCTGGCTTAATCGCTGGTGCTCTGGCACCGGGTTGTGCTTGTGCACCAGACCGGGCATTTTTTTCACTCTGAGACGAGTGGAGTGGTATC] [+] EMBL BI305941 [GTAGGGCACCTTCTTTAGGGCTTACTATCGTACCATGCTTATACACATATTTAACCCCGTGCTCCAATTGCCCTGTGTGTGACAGTGCCATCACCCACTTGCTGGCCACGCTGTGAGCACCTTGCTTAGTCCTTACCGAACCATGTGGTTGCCTACCGAGGACACTTGCCGCTCATCATGTACATGTTGGTACCTAGGGTAGCCCACATAACCATATACTAAGGGGTGAGCACCATAATTGATGCCAGGCTTGATCCTGCAAAGCCGGTGTGGGCACTATACGCTTGCTGGCTTAATCGCTGGTGCTCTGGCACCGGGTTGTGCTTGTGCACCAGACCGGGCATTTTTTTCACTCTGAGACGAGTGGAGTGGTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3450#0 ACTTGGGCACCTTCTTTAGCCCTTTCTATTGTCCCATGCTAATACACATATTTAACCCCG 60 consensus_3450#1 -GTAGGGCACCTTCTTTAGGGCTTACTATCGTACCATGCTTATACACATATTTAACCCCG 59 * *************** *** **** ** ******* ******************* consensus_3450#0 CCATCCAATTCCCCTGTTCGTTCCAGTTCCAGCACCCACTTGCTGGCCA-GCTGCGAGCA 119 consensus_3450#1 TGCTCCAATTGCCCTGTGTGTGACAGTGCCATCACCCACTTGCTGGCCACGCTGTGAGCA 119 ******* ****** ** **** *** ***************** **** ***** consensus_3450#0 CCTTGCTTAGTCCTTACCGAACCAGGTG-TTGTA-ACCGAGGAC-CTTGCGGCTCGCCAT 176 consensus_3450#1 CCTTGCTTAGTCCTTACCGAACCATGTGGTTGCCTACCGAGGACACTTGCCGCTCATCAT 179 ************************ *** *** ********* ***** **** *** consensus_3450#0 GTAGATGTTGGCACCGAGGGTAGCCCACATAACCATATAGTAAGGGGTGAGCACCA-AGT 235 consensus_3450#1 GTACATGTTGGTACCTAGGGTAGCCCACATAACCATATACTAAGGGGTGAGCACCATAAT 239 *** ******* *** *********************** **************** * * consensus_3450#0 TGCTGCCAGGCTTGATCCTCCAGATGCGGGTGTGGGCGCGATAGGCTTGCTGGTAGAAGC 295 consensus_3450#1 TGATGCCAGGCTTGATCCTGCAAA-GCCGGTGTGGGCACTATACGCTTGCTGGCTTAATC 298 ** **************** ** * ** ********* * *** ********* ** * consensus_3450#0 GCTGGTGCTCGGGCACCGGGTTGTGCTTGTTCACGAGACCGGCCATCTTTTCCGTTTTGT 355 consensus_3450#1 GCTGGTGCTCTGGCACCGGGTTGTGCTTGTGCACCAGACCGGGCATTTTTTTCACTCTGA 358 ********** ******************* *** ******* *** **** * * ** consensus_3450#0 GAGGAGTGGAGTGGTTGTTTCGGGGAGGTA 385 consensus_3450#1 GACGAGTGGAGTGGTATC------------ 376 ** ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||