These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1383 fasta sequence [TCTCTCTCTCTCCCCCCCCCCGCATTCCCCGTGCGCGCCAGCCGTGAGCCCACGAGGCCATTCGCACCAAGCCATGAAGCGCCGCTCATCCGTTTGGGAGACAGATCGGTCGTGGGAGGGCAAGTGGGTGCGATGGCGATCCGTGCAGCTCGATGGTGGTGGGGGCCGGAGTCGCGTCACGCCCCGGCGCCATCCGCCCCGCCGTGGCGGCGCAGGCGGAGGAGGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTGGCAACTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTATGTCTACTGTTCAACTCAACATATATTTTTCATATCTTCTGTACATCTCTTCTCTAATTTATCTTTGCAATATCATTTCATATTCCAGTTACAACTTATGGATATACTCCTACATTTAGCAAATATGATAGTTACTTCCGATATTTGTAAATATATAATCAGAATTAGTTAATTCTGAATTGAATTGGTTCTTTGCCCTGAGTGCTGATTTTAGTTCCTCAAAAAAAGTATCTGAATTTATTCTATTTGGTAAGCCTAAATTTGCCATGAATTTTGCCCACATTCTATTTGAGCATACATTATGATTTGAACCAAGTAGGAGCACTGTTAAAGTTTTGTGAATTGGTTTCTCTAAACCTAAGAAAGAATCCCTACCCTATGCACTGTTGTTGTTTCAGTTTCTTAAGAAAGGATTTCTAATACTTGCAGTGGATACTTATATGTCCTATAACTCTAATTAATTTGAGCAGTTGGAGAGCAACCAGAGGATTGGTATATAGATGTCCTGACATAGCGAGACTAATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTGTGTTCAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTCACTTATATCTCGATTCTTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAGCTAAATCTAAAGGAGTTTTTGTTGTTTCTGATATTTGCAGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACATTATTGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTCATGTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTCATCTAGTATCAATTAGAATAATAATACCACACTCCAGAGCATGCTAATCTGACAATTTGTTTTGAACGGCAACAAAAGCTTTGCCAT] [+] EMBL AK107188 [TCTCTCTCTCTCCCCCCCCCCGCATTCCCCGTGCGCGCCAGCCGTGAGCCCACGAGGCCATTCGCACCAAGCCATGAAGCGCCGCTCATCCGTTTGGGAGACAGATCGGTCGTGGGAGGGCAAGTGGGTGCGATGGCGATCCGTGCAGCTCGATGGTGGTGGGGGCCGGAGTCGCGTCACGCCCCGGCGCCATCCGCCCCGCCGTGGCGGCGCAGGCGGAGGAGGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTGGCAACTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTATGTCTACTGTTCAACTCAACATATATTTTTCATATCTTCTGTACATCTCTTCTCTAATTTATCTTTGCAATATCATTTCATATTCCAGTTACAACTTATGGATATACTCCTACATTTAGCAAATATGATAGTTACTTCCGATATTTGTAAATATATAATCAGAATTAGTTAATTCTGAATTGAATTGGTTCTTTGCCCTGAGTGCTGATTTTAGTTCCTCAAAAAAAGTATCTGAATTTATTCTATTTGGTAAGCCTAAATTTGCCATGAATTTTGCCCACATTCTATTTGAGCATACATTATGATTTGAACCAAGTAGGAGCACTGTTAAAGTTTTGTGAATTGGTTTCTCTAAACCTAAGAAAGAATCCCTACCCTATGCACTGTTGTTGTTTCAGTTTCTTAAGAAAGGATTTCTAATACTTGCAGTGGATACTTATATGTCCTATAACTCTAATTAATTTGAGCAGTTGGAGAGCAACCAGAGGATTGGTATATAGATGTCCTGACATAGCGAGACTAATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTGTGTTCAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTCACTTATATCTCGATTCTTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAGCTAAATCTAAAGGAGTTTTTGTTGTTTCTGATATTTGCAGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACATTATTGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTCATGTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTCATCTAGTATCAATTAGAATAATAATACCACACTCCAGAGCATGCTAATCTGACAATTTGTTTTGAACGGCAACAAAAGCTTTGCCAT] consensusID : consensus_346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGANATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTAGCANCTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACANANCTCCACNTTATTGGTTTATGANCTTGATGCANTTTCCAATNTTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCNATGCCATTTTATGTTTTCTAATGTGC] [+] EMBL BE228833 [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGANATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATTTGTTTAGCANCTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTTTTTGAAATTGTATACTACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACANANCTCCACNTTATTGGTTTATGANCTTGATGCANTTTCCAATNTTTCTTACTTGAGTACATATTTTGCCAATCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCNATGCCATTTTATGTTTTCTAATGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_346#0 TCTCTCTCTCTCCCCCCCCCCGCATTCCCCGTGCGCGCCAGCCGTGAGCCCACGAGGCCA 60 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTCGCACCAAGCCATGAAGCGCCGCTCATCCGTTTGGGAGACAGATCGGTCGTGGGAGGG 120 consensus_346#1 ------------------------------------------------------------ consensus_346#0 CAAGTGGGTGCGATGGCGATCCGTGCAGCTCGATGGTGGTGGGGGCCGGAGTCGCGTCAC 180 consensus_346#1 ------------------------------------------------------------ consensus_346#0 GCCCCGGCGCCATCCGCCCCGCCGTGGCGGCGCAGGCGGAGGAGGCGAAACCCTAGCGTG 240 consensus_346#1 ------------------------------------------------------------ consensus_346#0 GGGAGATGAGATACAAAAATATTTGTTTGGCAACTTGAGGAGAAGCTTGACAATTGAAGC 300 consensus_346#1 ------------------------------------------------------------ consensus_346#0 AGATAACCTTGCTCGGTATGTCTACTGTTCAACTCAACATATATTTTTCATATCTTCTGT 360 consensus_346#1 ------------------------------------------------------------ consensus_346#0 ACATCTCTTCTCTAATTTATCTTTGCAATATCATTTCATATTCCAGTTACAACTTATGGA 420 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TATACTCCTACATTTAGCAAATATGATAGTTACTTCCGATATTTGTAAATATATAATCAG 480 consensus_346#1 ------------------------------------------------------------ consensus_346#0 AATTAGTTAATTCTGAATTGAATTGGTTCTTTGCCCTGAGTGCTGATTTTAGTTCCTCAA 540 consensus_346#1 ------------------------------------------------------------ consensus_346#0 AAAAAGTATCTGAATTTATTCTATTTGGTAAGCCTAAATTTGCCATGAATTTTGCCCACA 600 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTCTATTTGAGCATACATTATGATTTGAACCAAGTAGGAGCACTGTTAAAGTTTTGTGAA 660 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTGGTTTCTCTAAACCTAAGAAAGAATCCCTACCCTATGCACTGTTGTTGTTTCAGTTTC 720 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTAAGAAAGGATTTCTAATACTTGCAGTGGATACTTATATGTCCTATAACTCTAATTAAT 780 consensus_346#1 ------------------------------------------------------------ consensus_346#0 TTGAGCAGTTGGAGAGCAACCAGAGGATTGGTATATAGATGTCCTGACATAGCGAGACTA 840 consensus_346#1 ------------------------------------------------------------ consensus_346#0 ATGTTGTGATTATGACTATAAATTTGAAACTTCTTGCAATCCAAATGAGTATTCTGTGTT 900 consensus_346#1 ------------------------------------------------------------ consensus_346#0 CAGTGCTTTTAGCAATTGATGCAAATATCACATTTAATTGCTCAAGTAGCAGAACTATTC 960 consensus_346#1 -CGT-CATCTAATTAGTGACGCGCATGAATGGATTAACGANATTCCCACTGTCCCTGTCT 58 ** * * ** * *** ** ** **** * ** * consensus_346#0 ACTTATATCTCGATTCTTCCATCTATATTTTTTATACATTCTAATATTGTGTGCATATAG 1020 consensus_346#1 ACT-ATCCAGCGAAACCCTAGCGTGGGGAGATGAGATACAAAAATATT-TGTTTA-GCAN 115 *** ** *** * * * * * * ****** *** * * consensus_346#0 CTAAATCTAAAGG--AGTTTTTGTTGTTTCTGATATTTGCAGGTTTTTGAAATTGTATAC 1078 consensus_346#1 CTTGAGGAGAAGCTTGACAATTGAAGCAGATAACCTTGCTCGGTTTTTGAAATTGTATAC 175 ** * *** *** * * * ** ******************* consensus_346#0 TACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACAGAGCTCCACATT 1138 consensus_346#1 TACACTATATTCCTGTTTGATTTTTCATGTCTTTCAAGCAATAAAACANANCTCCACNTT 235 ************************************************ * ****** ** consensus_346#0 ATTGGTTTATGAGCTTGATGCAGTTTCAAGTATTTCTTACTTGAGTACATATTTTGCCAA 1198 consensus_346#1 ATTGGTTTATGANCTTGATGCANTTTCCAATNTTTCTTACTTGAGTACATATTTTGCCAA 295 ************ ********* **** * * **************************** consensus_346#0 TCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCAATGCACATTTC 1258 consensus_346#1 TCAATTTTTTTTCATGTTCAAACAATACAATCTGATTGTTCATACTTCNATGC-CATTTT 354 ************************************************ **** ***** consensus_346#0 ATGTTTTCTAATGTGCCCGCGGCAACGCGCGGGGCTTCATCTAGTATCAATTAGAATAAT 1318 consensus_346#1 ATGTTTTCTAATGTGC-------------------------------------------- 370 **************** consensus_346#0 AATACCACACTCCAGAGCATGCTAATCTGACAATTTGTTTTGAACGGCAACAAAAGCTTT 1378 consensus_346#1 ------------------------------------------------------------ consensus_346#0 GCCAT 1383 consensus_346#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||