Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3486 cluster # 3486       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3486#0 length = 3141 sequences # 1  
 consensus_3486#1 length = 675 sequences # 1  
consensusID : consensus_3486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 3141
fasta sequence 
                              [AATGCCATTTTCTAATTCACGAGGCTCCAACCGCGAGAAAGGCGAGACAGAATGAATCCTCGCCGGCGACGAGGCGCCGACACCTCCCTCCGGCGACTGGGTCTCCGACCTCGTCGCCGGTGGCCGGACGGGGCAGCCTCGCCGCACGGGGAGCCCCATCGCCTCCGACTCCGTCTCGGAGTCGGATTCCCGCCCTCCTTATGGGAAAAAGAAAATATCTCACCCCGATTCGATCGCGACGAACCCTCGCACTCCGACTCCGATTCCAATTCCAACTCCAATGTCGGTGGATTTTATCCCTCGACGATAAAAAGGGCGCCACATCCTCCACCCGAGATCACCAAATCTCTCAATTCCCAAAATCAATTCGCGCACCAAACCTCCCAAATCCCTCTCCCACCAGTTCTTGGATTCGCCGAGGAGCTCTTGTCCTTCCATCCATGGCGGCGGGGTGGCGCGAGACGCCCGCCGCCTCCGCGGCCTTCCCGGTGGCCTACACCGCCGTCCTCGCGCTCTACCTCCTCCTCGGCGTCTTCCCGCGCCCGCGTGGCGCCCCGCCGTGCGAGGCGCTGCTGTGGGAGCTCGCCGACTGGGCGGCCGTGGCCGTCTGCCTCGCCGCCGACGCCTACTTCATCTACTGCATCGCCTCCTCCCGCCGCCGCCCCGACGTCCCACCGCGGCTGCCGCCCCCTCCCCCGCAGATGGATCTCTGCTAGGGTTTAGGGCAGGGCCTCGCCGTCTCGACATCGTCAGGGAGTGTCCTTAACCCTTCTTTTCTCATCATGCTGCTACTGTTATTTTCTTCAGTTAATTAGGAAGGTTTCTTTCTGGTGTAGTTTAGTTGTTAGCAACAGCCCTTGAACTGAAACCATGGTTAGAATTTGGAAGATTAATGCTGTAGTCTAGTGTCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCTGCATCACAATTGCTACTTCTGCTACTAGTCATTGTGTGATTACCTTTTGTCTTGCAAGTTTCTACACTTATTAGGAAGAATTCTGATGCTCTTAGAATATTGATTAGTCATTAGAATCTAGTTTTGTTAGATGTGTCGATGTAGAAATAGTCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCTTTCCAAACTTCAATCTTGTTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATAGTATATTCTATTGTCATCTGCTCTGCAAGTCTTGAACTTTGGTTTTTATCATACTGCAAAACACCCCTAATAGTACTTTCTGCAGTTACTTTTTGTCACCTGTTCTGCTAGTATTACTTTCTGCAGTTAGGATGATTTCTGTTGTACTGTAGTTGTTAGCAACAGTCTTGAACTGAAACCTTGGTTAGCTAGCTGTGAAAGTGTCTCAGCCAATTTTCTCTCCTTTCTTAATGAAACAACAGAGTTCCTGCTTTAGTATAAAAAAATACCAAAAAAAAATGGTTAGAATTAGGAAGATTTCCAATGTAGTGTAGTGTCCACAATGTTCTTCATGCTGCTTCAAAATCGCTACTTTTACTACAGTCATTATGTGATTACCTTTTGTCTTGCAAGTTTCTGCACTTAAGTAGGAAGATTTCTGATGATATTAGTCATTAGAATCTAGTTCTATTACATATATCAATGTCGGAATAGCATGTGCCATGTTTGTGTTCATATGCTCCTACACATATAGATCAAATTGTATATTCTACTATCATCTGTTCTGCAAGTCTTGAACTTCGGTTTTTATCATAGAGCAAAACACCCCAATAATTTCCTTTTGGGAAAACGGTTGAGTGATCATGAGGTCGAGAGTTCGAGCCTCTGTCACCCCAAATATTGAGTGATGAGGAAATGCTCCTGTGACAATCGGGTTCGTCACATTCATCTGACCATCAGATATTAAGAGCTAGTCTGAACTCAATTAACTTGAATCTTCTTTTTGTAATGCATATACTGTACTCCACACATGTCGATCAAATTGTATATTCTATTTTCATCTGTGCTGCAAGTCTTAAACTTTGGTTTTTATCATAGTGAAAATACCCCAATAATTTCCTTCTGGGAAAACCTAACTGCCAACTAGATGCACTAGTCTAAATATACAGTTAAGGGCTGGATATCACCATTGACTTGGTCTCTTGGTTGATTTATTGCTCTGATGACTACCAATTCAGGTCGCATTATTTTGCACTTGTGCCTGCCCCCACATATTTATTGGTCAATTTAGTTGGCTCCAAAAGGGTATAAAATACTAGCAGTTACTCTAACATAGTTCTGTGTTTTGCAGTATAAATCCAGGCACACCAAGTGGACACAAATATATAGAATACATCATGACTTTTCACCATATCATTCAGTATGAATATGTAACTAGTAATAAAAATGTTATTGATTTGAATGTTTTCAATCACCATCTATATTTTACCTATCTCAGTAAACTTCTTAGTTGTATTTGACCCCATGTCCTTTAGAATTGCATATTCCTTAACAAAGGGAGCAGTTGATGAGTGATCCTTTCTAAAACAGTTATTTGGATTTGTCTTATTGTAGTAATATTACTTGATTTGTCACCAAAAGCACTTCCATGTGTAATATCTTTATACTGAATAAAATCGAAATAGTAATGATCAAAGCATTTACTGAAGATTGTGTCAATGGTCTAAGACGACAATAGATGTAATTCAATTAGGTATGCCTGCATTCTATTTTCAATGGTTTCTTAATCTTGTGCTTAACTTTGCTGCAGCCAAACACTGTCGTAGATGAAGTGGTCAAGATTGTCTGGAAGGAGCAAAACATGAAGTCAATTGCTCTCCAGAAGACAAGGTCAATCACTGCTGTGCTGCCAAACAAATCAGTTGTTCTCCAGAGCGCCAGGTCAATCACTGTTGAGTTCGAGAACTTGAGCGAAAACTGAAGTTCGTGTATGCTTGGAGCTGCAGTGTTGAGAGCTTACTAACTTCGTGGCTCACTCATCTGAACTGAGAAGTTACAAAACCCAGTGGTGGAAACCAAACTACACAGGTGTAAACCTGGAGTAGCAGTAGCACTAAAGTAATTCTGGTCTAACATAAGTTACTTGTATCATTAGCTGTACTGAATCATTGTAGAGCTAATACTAATATATG]

[+] EMBL AK071918             [AATGCCATTTTCTAATTCACGAGGCTCCAACCGCGAGAAAGGCGAGACAGAATGAATCCTCGCCGGCGACGAGGCGCCGACACCTCCCTCCGGCGACTGGGTCTCCGACCTCGTCGCCGGTGGCCGGACGGGGCAGCCTCGCCGCACGGGGAGCCCCATCGCCTCCGACTCCGTCTCGGAGTCGGATTCCCGCCCTCCTTATGGGAAAAAGAAAATATCTCACCCCGATTCGATCGCGACGAACCCTCGCACTCCGACTCCGATTCCAATTCCAACTCCAATGTCGGTGGATTTTATCCCTCGACGATAAAAAGGGCGCCACATCCTCCACCCGAGATCACCAAATCTCTCAATTCCCAAAATCAATTCGCGCACCAAACCTCCCAAATCCCTCTCCCACCAGTTCTTGGATTCGCCGAGGAGCTCTTGTCCTTCCATCCATGGCGGCGGGGTGGCGCGAGACGCCCGCCGCCTCCGCGGCCTTCCCGGTGGCCTACACCGCCGTCCTCGCGCTCTACCTCCTCCTCGGCGTCTTCCCGCGCCCGCGTGGCGCCCCGCCGTGCGAGGCGCTGCTGTGGGAGCTCGCCGACTGGGCGGCCGTGGCCGTCTGCCTCGCCGCCGACGCCTACTTCATCTACTGCATCGCCTCCTCCCGCCGCCGCCCCGACGTCCCACCGCGGCTGCCGCCCCCTCCCCCGCAGATGGATCTCTGCTAGGGTTTAGGGCAGGGCCTCGCCGTCTCGACATCGTCAGGGAGTGTCCTTAACCCTTCTTTTCTCATCATGCTGCTACTGTTATTTTCTTCAGTTAATTAGGAAGGTTTCTTTCTGGTGTAGTTTAGTTGTTAGCAACAGCCCTTGAACTGAAACCATGGTTAGAATTTGGAAGATTAATGCTGTAGTCTAGTGTCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCTGCATCACAATTGCTACTTCTGCTACTAGTCATTGTGTGATTACCTTTTGTCTTGCAAGTTTCTACACTTATTAGGAAGAATTCTGATGCTCTTAGAATATTGATTAGTCATTAGAATCTAGTTTTGTTAGATGTGTCGATGTAGAAATAGTCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCTTTCCAAACTTCAATCTTGTTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATAGTATATTCTATTGTCATCTGCTCTGCAAGTCTTGAACTTTGGTTTTTATCATACTGCAAAACACCCCTAATAGTACTTTCTGCAGTTACTTTTTGTCACCTGTTCTGCTAGTATTACTTTCTGCAGTTAGGATGATTTCTGTTGTACTGTAGTTGTTAGCAACAGTCTTGAACTGAAACCTTGGTTAGCTAGCTGTGAAAGTGTCTCAGCCAATTTTCTCTCCTTTCTTAATGAAACAACAGAGTTCCTGCTTTAGTATAAAAAAATACCAAAAAAAAATGGTTAGAATTAGGAAGATTTCCAATGTAGTGTAGTGTCCACAATGTTCTTCATGCTGCTTCAAAATCGCTACTTTTACTACAGTCATTATGTGATTACCTTTTGTCTTGCAAGTTTCTGCACTTAAGTAGGAAGATTTCTGATGATATTAGTCATTAGAATCTAGTTCTATTACATATATCAATGTCGGAATAGCATGTGCCATGTTTGTGTTCATATGCTCCTACACATATAGATCAAATTGTATATTCTACTATCATCTGTTCTGCAAGTCTTGAACTTCGGTTTTTATCATAGAGCAAAACACCCCAATAATTTCCTTTTGGGAAAACGGTTGAGTGATCATGAGGTCGAGAGTTCGAGCCTCTGTCACCCCAAATATTGAGTGATGAGGAAATGCTCCTGTGACAATCGGGTTCGTCACATTCATCTGACCATCAGATATTAAGAGCTAGTCTGAACTCAATTAACTTGAATCTTCTTTTTGTAATGCATATACTGTACTCCACACATGTCGATCAAATTGTATATTCTATTTTCATCTGTGCTGCAAGTCTTAAACTTTGGTTTTTATCATAGTGAAAATACCCCAATAATTTCCTTCTGGGAAAACCTAACTGCCAACTAGATGCACTAGTCTAAATATACAGTTAAGGGCTGGATATCACCATTGACTTGGTCTCTTGGTTGATTTATTGCTCTGATGACTACCAATTCAGGTCGCATTATTTTGCACTTGTGCCTGCCCCCACATATTTATTGGTCAATTTAGTTGGCTCCAAAAGGGTATAAAATACTAGCAGTTACTCTAACATAGTTCTGTGTTTTGCAGTATAAATCCAGGCACACCAAGTGGACACAAATATATAGAATACATCATGACTTTTCACCATATCATTCAGTATGAATATGTAACTAGTAATAAAAATGTTATTGATTTGAATGTTTTCAATCACCATCTATATTTTACCTATCTCAGTAAACTTCTTAGTTGTATTTGACCCCATGTCCTTTAGAATTGCATATTCCTTAACAAAGGGAGCAGTTGATGAGTGATCCTTTCTAAAACAGTTATTTGGATTTGTCTTATTGTAGTAATATTACTTGATTTGTCACCAAAAGCACTTCCATGTGTAATATCTTTATACTGAATAAAATCGAAATAGTAATGATCAAAGCATTTACTGAAGATTGTGTCAATGGTCTAAGACGACAATAGATGTAATTCAATTAGGTATGCCTGCATTCTATTTTCAATGGTTTCTTAATCTTGTGCTTAACTTTGCTGCAGCCAAACACTGTCGTAGATGAAGTGGTCAAGATTGTCTGGAAGGAGCAAAACATGAAGTCAATTGCTCTCCAGAAGACAAGGTCAATCACTGCTGTGCTGCCAAACAAATCAGTTGTTCTCCAGAGCGCCAGGTCAATCACTGTTGAGTTCGAGAACTTGAGCGAAAACTGAAGTTCGTGTATGCTTGGAGCTGCAGTGTTGAGAGCTTACTAACTTCGTGGCTCACTCATCTGAACTGAGAAGTTACAAAACCCAGTGGTGGAAACCAAACTACACAGGTGTAAACCTGGAGTAGCAGTAGCACTAAAGTAATTCTGGTCTAACATAAGTTACTTGTATCATTAGCTGTACTGAATCATTGTAGAGCTAATACTAATATATG]




>consensus_3486#0
AATGCCATTTTCTAATTCACGAGGCTCCAACCGCGAGAAAGGCGAGACAGAATGAATCCT
CGCCGGCGACGAGGCGCCGACACCTCCCTCCGGCGACTGGGTCTCCGACCTCGTCGCCGG
TGGCCGGACGGGGCAGCCTCGCCGCACGGGGAGCCCCATCGCCTCCGACTCCGTCTCGGA
GTCGGATTCCCGCCCTCCTTATGGGAAAAAGAAAATATCTCACCCCGATTCGATCGCGAC
GAACCCTCGCACTCCGACTCCGATTCCAATTCCAACTCCAATGTCGGTGGATTTTATCCC
TCGACGATAAAAAGGGCGCCACATCCTCCACCCGAGATCACCAAATCTCTCAATTCCCAA
AATCAATTCGCGCACCAAACCTCCCAAATCCCTCTCCCACCAGTTCTTGGATTCGCCGAG
GAGCTCTTGTCCTTCCATCCATGGCGGCGGGGTGGCGCGAGACGCCCGCCGCCTCCGCGG
CCTTCCCGGTGGCCTACACCGCCGTCCTCGCGCTCTACCTCCTCCTCGGCGTCTTCCCGC
GCCCGCGTGGCGCCCCGCCGTGCGAGGCGCTGCTGTGGGAGCTCGCCGACTGGGCGGCCG
TGGCCGTCTGCCTCGCCGCCGACGCCTACTTCATCTACTGCATCGCCTCCTCCCGCCGCC
GCCCCGACGTCCCACCGCGGCTGCCGCCCCCTCCCCCGCAGATGGATCTCTGCTAGGGTT
TAGGGCAGGGCCTCGCCGTCTCGACATCGTCAGGGAGTGTCCTTAACCCTTCTTTTCTCA
TCATGCTGCTACTGTTATTTTCTTCAGTTAATTAGGAAGGTTTCTTTCTGGTGTAGTTTA
GTTGTTAGCAACAGCCCTTGAACTGAAACCATGGTTAGAATTTGGAAGATTAATGCTGTA
GTCTAGTGTCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCTGCATCACAATTGCTA
CTTCTGCTACTAGTCATTGTGTGATTACCTTTTGTCTTGCAAGTTTCTACACTTATTAGG
AAGAATTCTGATGCTCTTAGAATATTGATTAGTCATTAGAATCTAGTTTTGTTAGATGTG
TCGATGTAGAAATAGTCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCTTTCCAAACTTC
AATCTTGTTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATAGTATATTCTAT
TGTCATCTGCTCTGCAAGTCTTGAACTTTGGTTTTTATCATACTGCAAAACACCCCTAAT
AGTACTTTCTGCAGTTACTTTTTGTCACCTGTTCTGCTAGTATTACTTTCTGCAGTTAGG
ATGATTTCTGTTGTACTGTAGTTGTTAGCAACAGTCTTGAACTGAAACCTTGGTTAGCTA
GCTGTGAAAGTGTCTCAGCCAATTTTCTCTCCTTTCTTAATGAAACAACAGAGTTCCTGC
TTTAGTATAAAAAAATACCAAAAAAAAATGGTTAGAATTAGGAAGATTTCCAATGTAGTG
TAGTGTCCACAATGTTCTTCATGCTGCTTCAAAATCGCTACTTTTACTACAGTCATTATG
TGATTACCTTTTGTCTTGCAAGTTTCTGCACTTAAGTAGGAAGATTTCTGATGATATTAG
TCATTAGAATCTAGTTCTATTACATATATCAATGTCGGAATAGCATGTGCCATGTTTGTG
TTCATATGCTCCTACACATATAGATCAAATTGTATATTCTACTATCATCTGTTCTGCAAG
TCTTGAACTTCGGTTTTTATCATAGAGCAAAACACCCCAATAATTTCCTTTTGGGAAAAC
GGTTGAGTGATCATGAGGTCGAGAGTTCGAGCCTCTGTCACCCCAAATATTGAGTGATGA
GGAAATGCTCCTGTGACAATCGGGTTCGTCACATTCATCTGACCATCAGATATTAAGAGC
TAGTCTGAACTCAATTAACTTGAATCTTCTTTTTGTAATGCATATACTGTACTCCACACA
TGTCGATCAAATTGTATATTCTATTTTCATCTGTGCTGCAAGTCTTAAACTTTGGTTTTT
ATCATAGTGAAAATACCCCAATAATTTCCTTCTGGGAAAACCTAACTGCCAACTAGATGC
ACTAGTCTAAATATACAGTTAAGGGCTGGATATCACCATTGACTTGGTCTCTTGGTTGAT
TTATTGCTCTGATGACTACCAATTCAGGTCGCATTATTTTGCACTTGTGCCTGCCCCCAC
ATATTTATTGGTCAATTTAGTTGGCTCCAAAAGGGTATAAAATACTAGCAGTTACTCTAA
CATAGTTCTGTGTTTTGCAGTATAAATCCAGGCACACCAAGTGGACACAAATATATAGAA
TACATCATGACTTTTCACCATATCATTCAGTATGAATATGTAACTAGTAATAAAAATGTT
ATTGATTTGAATGTTTTCAATCACCATCTATATTTTACCTATCTCAGTAAACTTCTTAGT
TGTATTTGACCCCATGTCCTTTAGAATTGCATATTCCTTAACAAAGGGAGCAGTTGATGA
GTGATCCTTTCTAAAACAGTTATTTGGATTTGTCTTATTGTAGTAATATTACTTGATTTG
TCACCAAAAGCACTTCCATGTGTAATATCTTTATACTGAATAAAATCGAAATAGTAATGA
TCAAAGCATTTACTGAAGATTGTGTCAATGGTCTAAGACGACAATAGATGTAATTCAATT
AGGTATGCCTGCATTCTATTTTCAATGGTTTCTTAATCTTGTGCTTAACTTTGCTGCAGC
CAAACACTGTCGTAGATGAAGTGGTCAAGATTGTCTGGAAGGAGCAAAACATGAAGTCAA
TTGCTCTCCAGAAGACAAGGTCAATCACTGCTGTGCTGCCAAACAAATCAGTTGTTCTCC
AGAGCGCCAGGTCAATCACTGTTGAGTTCGAGAACTTGAGCGAAAACTGAAGTTCGTGTA
TGCTTGGAGCTGCAGTGTTGAGAGCTTACTAACTTCGTGGCTCACTCATCTGAACTGAGA
AGTTACAAAACCCAGTGGTGGAAACCAAACTACACAGGTGTAAACCTGGAGTAGCAGTAG
CACTAAAGTAATTCTGGTCTAACATAAGTTACTTGTATCATTAGCTGTACTGAATCATTG
TAGAGCTAATACTAATATATG

consensusID : consensus_3486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence 
                              [AACCCTNCTTTTCTATNATGCTGCTACTGTTATTTNCTTCAGGTAATTAGGAAGGTTTNTTTCTGGTGNAGTTTAGTTGTTAGCAACAGCCCTTGAACTGAAACCATGGCTAGAATTTGGAAGATTAATGGNGTNNTCTAGGGNCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCTGCATCACAATTGCTACTTCTGCTACTAGNCATTGTGTGATTACCTTNTGTCTTGCAAGNTTCTACACTTATTAGGAAGAATTCTGATGCTCTTANAATATTAGTCATTAGAANCTAGNTTTGNTAGATGTGNCGATGTAGAAATAGNCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCTATCCAAACTTCAATCTTGNTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATAGNATATTCTATTGTCATCNGTTCTGCAAGTCTTGAATTTTGGTTTTTATCATACTGCAAAACACCCCTAATAGTACTTTCTGCTGTTACTTTTGNCACCTGCTCTGCTAGTATTACTTTCTGCAGGCTAGGATGANTNCCAGTTGTACTGTAGGTGTTAGCAACAGTCTTTGAACTGAACCTTGGTTAGCTAGCTGTGAGAGTGNCTCAGNCAATTTTCTCTNCTTTCTTAATGAAACAACAGAGTTTCCNGCTT]

[+] EMBL CB096540             [AACCCTNCTTTTCTATNATGCTGCTACTGTTATTTNCTTCAGGTAATTAGGAAGGTTTNTTTCTGGTGNAGTTTAGTTGTTAGCAACAGCCCTTGAACTGAAACCATGGCTAGAATTTGGAAGATTAATGGNGTNNTCTAGGGNCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCTGCATCACAATTGCTACTTCTGCTACTAGNCATTGTGTGATTACCTTNTGTCTTGCAAGNTTCTACACTTATTAGGAAGAATTCTGATGCTCTTANAATATTAGTCATTAGAANCTAGNTTTGNTAGATGTGNCGATGTAGAAATAGNCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCTATCCAAACTTCAATCTTGNTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATAGNATATTCTATTGTCATCNGTTCTGCAAGTCTTGAATTTTGGTTTTTATCATACTGCAAAACACCCCTAATAGTACTTTCTGCTGTTACTTTTGNCACCTGCTCTGCTAGTATTACTTTCTGCAGGCTAGGATGANTNCCAGTTGTACTGTAGGTGTTAGCAACAGTCTTTGAACTGAACCTTGGTTAGCTAGCTGTGAGAGTGNCTCAGNCAATTTTCTCTNCTTTCTTAATGAAACAACAGAGTTTCCNGCTT]




>consensus_3486#1
AACCCTNCTTTTCTATNATGCTGCTACTGTTATTTNCTTCAGGTAATTAGGAAGGTTTNT
TTCTGGTGNAGTTTAGTTGTTAGCAACAGCCCTTGAACTGAAACCATGGCTAGAATTTGG
AAGATTAATGGNGTNNTCTAGGGNCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCT
GCATCACAATTGCTACTTCTGCTACTAGNCATTGTGTGATTACCTTNTGTCTTGCAAGNT
TCTACACTTATTAGGAAGAATTCTGATGCTCTTANAATATTAGTCATTAGAANCTAGNTT
TGNTAGATGTGNCGATGTAGAAATAGNCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCT
ATCCAAACTTCAATCTTGNTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATA
GNATATTCTATTGTCATCNGTTCTGCAAGTCTTGAATTTTGGTTTTTATCATACTGCAAA
ACACCCCTAATAGTACTTTCTGCTGTTACTTTTGNCACCTGCTCTGCTAGTATTACTTTC
TGCAGGCTAGGATGANTNCCAGTTGTACTGTAGGTGTTAGCAACAGTCTTTGAACTGAAC
CTTGGTTAGCTAGCTGTGAGAGTGNCTCAGNCAATTTTCTCTNCTTTCTTAATGAAACAA
CAGAGTTTCCNGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3486#0      AATGCCATTTTCTAATTCACGAGGCTCCAACCGCGAGAAAGGCGAGACAGAATGAATCCT 60
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      CGCCGGCGACGAGGCGCCGACACCTCCCTCCGGCGACTGGGTCTCCGACCTCGTCGCCGG 120
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TGGCCGGACGGGGCAGCCTCGCCGCACGGGGAGCCCCATCGCCTCCGACTCCGTCTCGGA 180
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GTCGGATTCCCGCCCTCCTTATGGGAAAAAGAAAATATCTCACCCCGATTCGATCGCGAC 240
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GAACCCTCGCACTCCGACTCCGATTCCAATTCCAACTCCAATGTCGGTGGATTTTATCCC 300
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TCGACGATAAAAAGGGCGCCACATCCTCCACCCGAGATCACCAAATCTCTCAATTCCCAA 360
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      AATCAATTCGCGCACCAAACCTCCCAAATCCCTCTCCCACCAGTTCTTGGATTCGCCGAG 420
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GAGCTCTTGTCCTTCCATCCATGGCGGCGGGGTGGCGCGAGACGCCCGCCGCCTCCGCGG 480
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      CCTTCCCGGTGGCCTACACCGCCGTCCTCGCGCTCTACCTCCTCCTCGGCGTCTTCCCGC 540
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GCCCGCGTGGCGCCCCGCCGTGCGAGGCGCTGCTGTGGGAGCTCGCCGACTGGGCGGCCG 600
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TGGCCGTCTGCCTCGCCGCCGACGCCTACTTCATCTACTGCATCGCCTCCTCCCGCCGCC 660
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GCCCCGACGTCCCACCGCGGCTGCCGCCCCCTCCCCCGCAGATGGATCTCTGCTAGGGTT 720
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TAGGGCAGGGCCTCGCCGTCTCGACATCGTCAGGGAGTGTCCTTAACCCTTCTTTTCTCA 780
consensus_3486#1      --------------------------------------------AACCCTNCTTTTCT-A 15
                                                                  ****** ******* *

consensus_3486#0      TCATGCTGCTACTGTTATTTTCTTCAGTTAATTAGGAAGGTTTCTTTCTGGTGTAGTTTA 840
consensus_3486#1      TNATGCTGCTACTGTTATTTNCTTCAGGTAATTAGGAAGGTTTNTTTCTGGTGNAGTTTA 75
                      * ****************** ****** *************** ********* ******

consensus_3486#0      GTTGTTAGCAACAGCCCTTGAACTGAAACCATGGTTAGAATTTGGAAGATTAATGCTGTA 900
consensus_3486#1      GTTGTTAGCAACAGCCCTTGAACTGAAACCATGGCTAGAATTTGGAAGATTAATGGNGTN 135
                      ********************************** ********************  ** 

consensus_3486#0      GTCTAGTGTCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCTGCATCACAATTGCTA 960
consensus_3486#1      NTCTAGGGNCAACAACGCTTCCTTGTGCTGCTTTAATGAGCTTCTGCATCACAATTGCTA 195
                       ***** * ***************************************************

consensus_3486#0      CTTCTGCTACTAGTCATTGTGTGATTACCTTTTGTCTTGCAAGTTTCTACACTTATTAGG 1020
consensus_3486#1      CTTCTGCTACTAGNCATTGTGTGATTACCTTNTGTCTTGCAAGNTTCTACACTTATTAGG 255
                      ************* ***************** *********** ****************

consensus_3486#0      AAGAATTCTGATGCTCTTAGAATATTGATTAGTCATTAGAATCTAGTTTTGTTAGATGTG 1080
consensus_3486#1      AAGAATTCTGATGCTCTTANAATA----TTAGTCATTAGAANCTAGNTTTGNTAGATGTG 311
                      ******************* ****    ************* **** **** ********

consensus_3486#0      TCGATGTAGAAATAGTCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCTTTCCAAACTTC 1140
consensus_3486#1      NCGATGTAGAAATAGNCGATTGCGTTCGTGTTCCTTTGATAAGCCTTCTATCCAAACTTC 371
                       ************** ********************************* **********

consensus_3486#0      AATCTTGTTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATAGTATATTCTAT 1200
consensus_3486#1      AATCTTGNTTTTGTAATGCATATGATCCTCCACATATAAGGATCAAATAGNATATTCTAT 431
                      ******* ****************************************** *********

consensus_3486#0      TGTCATCTGCTCTGCAAGTCTTGAACTTTGGTTTTTATCATACTGCAAAACACCCCTAAT 1260
consensus_3486#1      TGTCATCNGTTCTGCAAGTCTTGAATTTTGGTTTTTATCATACTGCAAAACACCCCTAAT 491
                      ******* * *************** **********************************

consensus_3486#0      AGTACTTTCTGCAGTTACTTTTTGTCACCTGTTCTGCTAGTATTACTTTCTGCAG-TTAG 1319
consensus_3486#1      AGTACTTTCTGCTGTTACTTTT-GNCACCTGCTCTGCTAGTATTACTTTCTGCAGGCTAG 550
                      ************ ********* * ****** ***********************  ***

consensus_3486#0      GATGATTTCT-GTTGTACTGTAGTTGTTAGCAACAGTCTTGAACTGAAACCTTGGTTAGC 1378
consensus_3486#1      GATGANTNCCAGTTGTACTGTAGGTGTTAGCAACAGTCTTTGAACTGAACCTTGGTTAGC 610
                      ***** * *  ************ ****************  *    *************

consensus_3486#0      TAGCTGTGAAAGTGTCTCAGCCAATTTTCTCTCCTTTCTTAATGAAACAACAGAGTTCCT 1438
consensus_3486#1      TAGCTGTGAGAGTGNCTCAGNCAATTTTCTCTNCTTTCTTAATGAAACAACAGAGTTTCC 670
                      ********* **** ***** *********** ************************ * 

consensus_3486#0      GCTTTAGTATAAAAAAATACCAAAAAAAAATGGTTAGAATTAGGAAGATTTCCAATGTAG 1498
consensus_3486#1      NGCTT------------------------------------------------------- 675
                         **                                                       

consensus_3486#0      TGTAGTGTCCACAATGTTCTTCATGCTGCTTCAAAATCGCTACTTTTACTACAGTCATTA 1558
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TGTGATTACCTTTTGTCTTGCAAGTTTCTGCACTTAAGTAGGAAGATTTCTGATGATATT 1618
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      AGTCATTAGAATCTAGTTCTATTACATATATCAATGTCGGAATAGCATGTGCCATGTTTG 1678
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TGTTCATATGCTCCTACACATATAGATCAAATTGTATATTCTACTATCATCTGTTCTGCA 1738
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      AGTCTTGAACTTCGGTTTTTATCATAGAGCAAAACACCCCAATAATTTCCTTTTGGGAAA 1798
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      ACGGTTGAGTGATCATGAGGTCGAGAGTTCGAGCCTCTGTCACCCCAAATATTGAGTGAT 1858
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GAGGAAATGCTCCTGTGACAATCGGGTTCGTCACATTCATCTGACCATCAGATATTAAGA 1918
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GCTAGTCTGAACTCAATTAACTTGAATCTTCTTTTTGTAATGCATATACTGTACTCCACA 1978
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      CATGTCGATCAAATTGTATATTCTATTTTCATCTGTGCTGCAAGTCTTAAACTTTGGTTT 2038
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TTATCATAGTGAAAATACCCCAATAATTTCCTTCTGGGAAAACCTAACTGCCAACTAGAT 2098
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GCACTAGTCTAAATATACAGTTAAGGGCTGGATATCACCATTGACTTGGTCTCTTGGTTG 2158
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      ATTTATTGCTCTGATGACTACCAATTCAGGTCGCATTATTTTGCACTTGTGCCTGCCCCC 2218
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      ACATATTTATTGGTCAATTTAGTTGGCTCCAAAAGGGTATAAAATACTAGCAGTTACTCT 2278
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      AACATAGTTCTGTGTTTTGCAGTATAAATCCAGGCACACCAAGTGGACACAAATATATAG 2338
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      AATACATCATGACTTTTCACCATATCATTCAGTATGAATATGTAACTAGTAATAAAAATG 2398
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TTATTGATTTGAATGTTTTCAATCACCATCTATATTTTACCTATCTCAGTAAACTTCTTA 2458
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GTTGTATTTGACCCCATGTCCTTTAGAATTGCATATTCCTTAACAAAGGGAGCAGTTGAT 2518
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GAGTGATCCTTTCTAAAACAGTTATTTGGATTTGTCTTATTGTAGTAATATTACTTGATT 2578
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TGTCACCAAAAGCACTTCCATGTGTAATATCTTTATACTGAATAAAATCGAAATAGTAAT 2638
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GATCAAAGCATTTACTGAAGATTGTGTCAATGGTCTAAGACGACAATAGATGTAATTCAA 2698
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TTAGGTATGCCTGCATTCTATTTTCAATGGTTTCTTAATCTTGTGCTTAACTTTGCTGCA 2758
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GCCAAACACTGTCGTAGATGAAGTGGTCAAGATTGTCTGGAAGGAGCAAAACATGAAGTC 2818
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      AATTGCTCTCCAGAAGACAAGGTCAATCACTGCTGTGCTGCCAAACAAATCAGTTGTTCT 2878
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      CCAGAGCGCCAGGTCAATCACTGTTGAGTTCGAGAACTTGAGCGAAAACTGAAGTTCGTG 2938
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TATGCTTGGAGCTGCAGTGTTGAGAGCTTACTAACTTCGTGGCTCACTCATCTGAACTGA 2998
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      GAAGTTACAAAACCCAGTGGTGGAAACCAAACTACACAGGTGTAAACCTGGAGTAGCAGT 3058
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      AGCACTAAAGTAATTCTGGTCTAACATAAGTTACTTGTATCATTAGCTGTACTGAATCAT 3118
consensus_3486#1      ------------------------------------------------------------
                                                                                  

consensus_3486#0      TGTAGAGCTAATACTAATATATG 3141
consensus_3486#1      -----------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)