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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1119 fasta sequence
[TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAGAGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTTTTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGAGGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGTCGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGGCTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACTATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGGTGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGCGCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGGGGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCCCGCGCCCTGGTCATGTGCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCGACCTGGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTCCCGGCGCCGGCGGCCCCCATCTGTAGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACTGCATC]
[+] EMBL AK107234 [TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAGAGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTTTTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGAGGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGTCGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGGCTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACTATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGGTGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGCGCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGGGGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCGCCGCCCGCGCCGCCGCCATCAGCGGCGCCCGCGCCCTGGTCATGTGCAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCTCCACGCCGGCGGCACCGACCTGGGCCGCAACGTCACCGGCTACCCGTGGCTTGGCGACGAGATGGAGCTGACTCCTCCCGGCGCCGGCGGCCCCCATCTGTAGGTTCGCCGCGGAGGTGGCCAGCCGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACTGCATC]
consensusID : consensus_3501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGGTCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCAGGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGATGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGCGGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCATAATATGAAAACTACATCTTTGTTTTTTAAGAAAAAA]
[+] EMBL BI800328 [TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCGACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGGTCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCAGGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGATGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGCGGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCAGTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCAGTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATCAGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCATAATATGAAAACTACATCTTTGTTTTTTAAGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3501#0 TTCTCACGCCGCACACACTGCGGCCCCTGCATCGCTAGCGTGAGCGAGAACGAGAACGAG 60
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 AGACGCACGTAGTGGTACCTTTTGCGAACGGTAGCGAGAGCGAGAGATCGCGTGGTTTTT 120
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 TTTGATCGCTAGCTGTGTTAGCCATGGCGCCGGGTGCTGGGTCGTCGTCGTCGGCGAGGA 180
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 GGGGCAGGCGCGTCGCCGCCGCCGAGCCGCCCCGCCGCGCGCTCAGGATGCGCGCGTCGT 240
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 CGCCGATGTACTACACGTCCGACGACGAGGACTTGCCGGAGATTGTCCTGACGCCCCCGG 300
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 CTCCGGCGCCGCCGCGCACCGGTACCCGCTCGCTGCGGATGCACGCGTCGCCGCCCGACT 360
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 ATGGGCGCCGCCGTACCAACCGACCCCGCCGCGTGGCACGGACGAGGTCGCCGCCGGTGG 420
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 TGCAGGAGGCGGAGAGGGAGCCGCCGGCGCCGCAGCAGCCGGCGGCGGTGGTGGTGGAGC 480
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 GCGTGTTTTACATGGTGGGCAGCCCGCCGGACGTCATCACGGCCACGGGGGAAGGGCCGG 540
consensus_3501#1 ------------------------------------------------------------
consensus_3501#0 GGGGGCGCACGGTGGCGGGCTTCCGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCG 600
consensus_3501#1 -------------------TTCCAGTTGCAGGAGGCTCACGTCCACGCGCACCCTCGTCG 41
* * ************************************
consensus_3501#0 ACGGCGAGGACGCCGCCGCCCGC--GCCGCC-GCCATCAGC-GGCGCCCGC--GCCCTGG 654
consensus_3501#1 ACGGCGAGGACGCCCCAGCCCAGCAGCCACCAGCCATCAGCAGGCGCCCAGCAGCCCTGG 101
************** * **** *** ** ********* ******* *******
consensus_3501#0 TCATGTGCA-GCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGC-TCCAC-GCCG 711
consensus_3501#1 TCATGTGCAAGCTGCCACGGCGCGCCCTTCACCCACGCCGAGTTCCTGCATCCACAGCCA 161
********* *************************************** ***** ***
consensus_3501#0 GC--GGCACC-GACCTGGGCC-GCAACGTCACC-GGCTACCC-GTGGCTTGGCGACGAGA 765
consensus_3501#1 GGCAGGCACCAGACCTGGGCCAGCAACGTCACCAGGCTACCCAGTGGCTTGGCGACGAGA 221
* ****** ********** *********** ******** *****************
consensus_3501#0 TGGAGCTGAC-TCCTCCCGGCGCCGGC-----GGCCCCCATC--TGTAGGTTCGCC--GC 815
consensus_3501#1 TGGAGCTGACATCCATCCCAGGCAGCCAGGCAGGCCCCCAATCATGTAGGTTCAGCCAGC 281
********** *** ** ** * * ******** ********* * **
consensus_3501#0 GGAGGTGGCCAGCC-GTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCG 874
consensus_3501#1 GGAGGTGGCCAGCCAGTCGTCGTCGACGACGACGACGACCGCGGAGTGGCGTCTGCGGCG 341
************** *********************************************
consensus_3501#0 GCGCGCGGCGGAGGCGGCGGCGAGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCA 934
consensus_3501#1 GCG-------------------AGCAACGCATGGTCCGGGGAGAGCTTTGATCTGATGCA 382
*** **************************************
consensus_3501#0 GTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCA 994
consensus_3501#1 GTGTGTCCGTTTTCAATGCCAGTCTTCGCTCTTAGCTACTTGCAGTTGACTGCTGTCTCA 442
************************************************************
consensus_3501#0 GTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATC 1054
consensus_3501#1 GTCTGACTGTCAAGTTTATCTTTAATTTTCGCAAGTTTACTTTCATGTTTCTAAATTATC 502
************************************************************
consensus_3501#0 AGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCAATAATATGAAAACT 1114
consensus_3501#1 AGTTGTAATCGTCGATCGATGTAATAGCTCTAGATCTCCCGGATCA-TAATATGAAAACT 561
********************************************** *************
consensus_3501#0 GCATC------------------- 1119
consensus_3501#1 ACATCTTTGTTTTTTAAGAAAAAA 585
****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||