These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1234 fasta sequence [GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGACACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAGGTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGAAACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAGTGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGAAATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTATTATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTACGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTCATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTCCGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTATTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGAAATTAATATATATAGCACTTGATAATATAAGTAC] [+] EMBL AK102457 [GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGACACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAGGTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGAAACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAGTGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGAAATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTATTATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTACGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTCATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTCCGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTATTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGAAATTAATATATATAGCACTTGATAATATAAGTAC] consensusID : consensus_3507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [GTATTTGGGCGCATAGTTAGTAATAAATTTTAAGTCCAAAAATGCTGCAGTGACTAATGTCGTTACTGAACATTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTCTTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTNCGACTTAAGTTANGTGACTTTAATATCACTGACATG] [+] EMBL CB097092 [GTATTTGGGCGCATAGTTAGTAATAAATTTTAAGTCCAAAAATGCTGCAGTGACTAATGTCGTTACTGAACATTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTCTTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTNCGACTTAAGTTANGTGACTTTAATATCACTGACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3507#0 GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGAC 60 consensus_3507#1 ------------------------------------------------------------ consensus_3507#0 ACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAG 120 consensus_3507#1 ------------------------------------------------------------ consensus_3507#0 GTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGA 180 consensus_3507#1 ------------------------------------------------------------ consensus_3507#0 AACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAG 240 consensus_3507#1 ------------------------------------------------------------ consensus_3507#0 TGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGA 300 consensus_3507#1 ------------------------------------------------------------ consensus_3507#0 AATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTAT 360 consensus_3507#1 --------------------------------------GTATTTGGGCGC-----ATAGT 17 **** ** * * * consensus_3507#0 TATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTA 420 consensus_3507#1 TAGTAATAAATTTTAAGTCCAAAAATGCT-----GCAGTGACTAATGTCGTTACTGAACA 72 ** **** * ** * * * * * * ** ** * ** * consensus_3507#0 CGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGG 480 consensus_3507#1 TTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGG 132 * *** * ***** ** ** * *************************** consensus_3507#0 TGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTC 540 consensus_3507#1 TGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTC 192 ************************************************* ********* consensus_3507#0 ATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTT 600 consensus_3507#1 TTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTT 252 *********************************************************** consensus_3507#0 GGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAA 660 consensus_3507#1 GGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAA 312 ************************************************************ consensus_3507#0 CTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTC 720 consensus_3507#1 CTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTC 372 ************************************************************ consensus_3507#0 TTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCA 780 consensus_3507#1 TTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCA 432 ************************************************************ consensus_3507#0 TGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACT 840 consensus_3507#1 TGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACT 492 ************************************************************ consensus_3507#0 TTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTT 900 consensus_3507#1 TTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTT 552 **************************************** ******************* consensus_3507#0 GTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGAT 960 consensus_3507#1 GTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGAT 612 ************************************************************ consensus_3507#0 ATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAG 1020 consensus_3507#1 ACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAG 672 * ********************************************************** consensus_3507#0 ATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTC 1080 consensus_3507#1 ATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTN 732 ***************************************** ***************** consensus_3507#0 CGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTA 1140 consensus_3507#1 CGACTTAAGTTANGTGACTTTAATATCACTGACATG------------------------ 768 ************ ****************** *** consensus_3507#0 TTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGA 1200 consensus_3507#1 ------------------------------------------------------------ consensus_3507#0 AATTAATATATATAGCACTTGATAATATAAGTAC 1234 consensus_3507#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||