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Oryza sativa
cluster # 3507 cluster # 3507       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3507#0 length = 1234 sequences # 1  
consensus_3507#1 length = 768 sequences # 1  

consensusID : consensus_3507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1234
fasta sequence
                              [GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGACACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAGGTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGAAACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAGTGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGAAATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTATTATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTACGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTCATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTCCGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTATTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGAAATTAATATATATAGCACTTGATAATATAAGTAC]

[+] EMBL AK102457             [GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGACACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAGGTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGAAACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAGTGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGAAATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTATTATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTACGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTCATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTCCGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTATTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGAAATTAATATATATAGCACTTGATAATATAAGTAC]


>consensus_3507#0 GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGAC ACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAG GTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGA AACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAG TGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGA AATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTAT TATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTA CGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGG TGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTC ATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTT GGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAA CTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTC TTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCA TGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACT TTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTT GTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGAT ATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAG ATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTC CGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTA TTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGA AATTAATATATATAGCACTTGATAATATAAGTAC



consensusID : consensus_3507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 768
fasta sequence
                              [GTATTTGGGCGCATAGTTAGTAATAAATTTTAAGTCCAAAAATGCTGCAGTGACTAATGTCGTTACTGAACATTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTCTTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTNCGACTTAAGTTANGTGACTTTAATATCACTGACATG]

[+] EMBL CB097092             [GTATTTGGGCGCATAGTTAGTAATAAATTTTAAGTCCAAAAATGCTGCAGTGACTAATGTCGTTACTGAACATTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTCTTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGATACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTNCGACTTAAGTTANGTGACTTTAATATCACTGACATG]


>consensus_3507#1 GTATTTGGGCGCATAGTTAGTAATAAATTTTAAGTCCAAAAATGCTGCAGTGACTAATGT CGTTACTGAACATTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTAC TTCCTCATTGGGTGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGG GTTAGTGGACTCTTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCAC AGCTGTACTGTTGGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACA AGCCCCCTTCAACTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATC TTTGGGCATTTCTTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGA TCAGCTTGATCATGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCA AGGAACTGAACTTTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAG ATTGCATTGGTTGTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTT TATAGCAAAGATACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTA GTTACGTTTTAGATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGG TAACTTTATCTNCGACTTAAGTTANGTGACTTTAATATCACTGACATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3507#0      GGTCTCGGTTGCTTTGTTGATCTCTTCTGTCATCTACATGAAAATATCTCTGGTTGAGAC 60
consensus_3507#1      ------------------------------------------------------------
                                                                                  

consensus_3507#0      ACTTCAAAGAGCTTCTTCTGGTTCGTTTGAGCATATGTCGTTCTCATCTTTGGTTGTCAG 120
consensus_3507#1      ------------------------------------------------------------
                                                                                  

consensus_3507#0      GTTACCACTGCGGCGCTGGGAGTCTATCAAGGAGAATATTAACATAATCAGGAGAAGTGA 180
consensus_3507#1      ------------------------------------------------------------
                                                                                  

consensus_3507#0      AACACTTAGCAGAATCACATACATTTCCTTCTTCTACGAGTTGGGCATGATCGGCATTAG 240
consensus_3507#1      ------------------------------------------------------------
                                                                                  

consensus_3507#0      TGATGTCCTAATGTACTATCTGAAGTCAGTATTTGGTTTTGACAAGAACCAGTTCTCTGA 300
consensus_3507#1      ------------------------------------------------------------
                                                                                  

consensus_3507#0      AATTCTTATGGTAGTAGGCATTGGTTCAATCTTTTCGCAGATTTTGGTACTCCCTGTTAT 360
consensus_3507#1      --------------------------------------GTATTTGGGCGC-----ATAGT 17
                                                              **** **  *      *  *

consensus_3507#0      TATCAATACAGTTGGTGAGAAGGGAGTCCTATGCGTTGGGATACTTGCATCTGTTGCCTA 420
consensus_3507#1      TAGTAATAAATTTTAAGTCCAAAAATGCT-----GCAGTGACTAATGTCGTTACTGAACA 72
                      **  **** * **   *   *   *  *      *  * **    **    *  **   *

consensus_3507#0      CGCTGTCCTGTATGGTTTGGCATGGAGTTACTGGGTTCCTTATCTTACTTCCTCATTGGG 480
consensus_3507#1      TTTTTGTTTGTTTTGTTTGACACTGATTATGCAGGTTCCTTATCTTACTTCCTCATTGGG 132
                         *    *** * ***** **  ** *     ***************************

consensus_3507#0      TGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGGAAGTGGACTC 540
consensus_3507#1      TGTCATCTATGTTCTGGTCAAACCAGCTACTTATGCAATCATCTCTGGGTTAGTGGACTC 192
                      *************************************************  *********

consensus_3507#0      ATCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTT 600
consensus_3507#1      TTCTGACCAGGGAAAGGCACAAGGATTCATTTCAACTGTGAAATCCACAGCTGTACTGTT 252
                       ***********************************************************

consensus_3507#0      GGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAA 660
consensus_3507#1      GGCACCATTGTTCATGAGCCCCCTGACCTCTTACTTCATTTCAGAACAAGCCCCCTTCAA 312
                      ************************************************************

consensus_3507#0      CTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTC 720
consensus_3507#1      CTGCAAAGGTTTCAGTTTCCTCGTTGCCGGTTTCTTCTTGGCAATATCTTTGGGCATTTC 372
                      ************************************************************

consensus_3507#0      TTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCA 780
consensus_3507#1      TTTCATGCTTAAGCCAGAAGCCAAATGCACAAGAGTTGCAGTTCCAGATCAGCTTGATCA 432
                      ************************************************************

consensus_3507#0      TGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACT 840
consensus_3507#1      TGAAGCAGTGCAAGCACCACTATTAGCTCAACCATGAACAAATTGGCAAGGAACTGAACT 492
                      ************************************************************

consensus_3507#0      TTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAAGTTTGAAGATTGCATTGGTT 900
consensus_3507#1      TTGTACCTGTACATACCATTCTACCTGGCAAACATCTGAACTTTGAAGATTGCATTGGTT 552
                      **************************************** *******************

consensus_3507#0      GTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGAT 960
consensus_3507#1      GTAACGCCACAATCTTGAAACTCATGTTGCCAAAGCTGATATTGGGTTTATAGCAAAGAT 612
                      ************************************************************

consensus_3507#0      ATTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAG 1020
consensus_3507#1      ACTAATTGTACATATAGCGGATGTTAATGTTATGTCTAGTACTAATTAGTTACGTTTTAG 672
                      * **********************************************************

consensus_3507#0      ATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGTTGCAGGTAACTTTATCTC 1080
consensus_3507#1      ATTCAATAGTAGCCAAGTGAAGTTTGTGTAAGAAGGTAAAGNTGCAGGTAACTTTATCTN 732
                      ***************************************** ***************** 

consensus_3507#0      CGACTTAAGTTAGGTGACTTTAATATCACTGGCATATGGGTCCACAGCAATGGCACGGTA 1140
consensus_3507#1      CGACTTAAGTTANGTGACTTTAATATCACTGACATG------------------------ 768
                      ************ ****************** ***                         

consensus_3507#0      TTACAAAAGTGTGCCTGCACTTTATAGTTGCAACTGACTGAACCAAGGCTGTTCTCGTGA 1200
consensus_3507#1      ------------------------------------------------------------
                                                                                  

consensus_3507#0      AATTAATATATATAGCACTTGATAATATAAGTAC 1234
consensus_3507#1      ----------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)