These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3510#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2170 fasta sequence [GCGTGGAAGTGGAAGGATCGGAGGCGGGCGCGCGAGCGAGCGAGGCAGAGGGGACGGCGAGCCGCAGCTACCGCACGGGCCTCGAGGGATCGATCCGCGCCACCGCCGCGGCCGCCTCTGGCGAATGCGCCCGCGCGAATGCCGCCGCCGTCGCCGGAGGTGGCGGCGGCGGGCGGCGGCGGAGGGGGAGAGAGAGAGAAGAAAGGGGGAGGGGTAAAACCGTAAAAACCGTAGGAAAGCGAGGGTGAAAGTGAAAAGCGAGAGGAAGGTGGGGGTGGGGCACTGACAAGTGGGCCCCGTTTGCAGTGACACGCCATCTCCTTCCGGTAGAGGGAGCCCGTCTCGCCTCCGCTCCGATTCCGGCGGCGGCGACTCCACCGGCGGCGAATCGCCGCCGCCGGCCACCGCCACGCGCCGCTCTTGGATCATTCAATCACCCCCAAGACACCATTCCAATCCAGTTCAGTGTTAGTTCGGAATAGACATGAACAGTTCTTGGCTTCTTGATGATTTGCTCTTAGCTGCTGTTCTATGCAATTGTTCAATATTTTTTTGTGTGTATGTGTTTTTTTTAATTTTTAATTTGCTGAGGCACAGAATTTGGAATTGCTCCATAAATGATTGGAGGATTTGTTGTGACTTTTCCACAATGTTTCTTCTCATCTTGATTGGTTGCCGTGCACCCCAAGCAGCAAATTCCAACCCTTGCTTAGAATTGATGTGGTCAATCCAGGCTTCCAGCCGATTGGTGGATTATGGTGTTCTTTATATATCATGTTTTGGATACACTCCACGTTGATCTAGTCTCATATGTCAGTGAACTAACATTTTTTTTGCAAGTTGGTCTGAAGGGAAAGTTCATGGCTACTGCTCTTTTGCTGTATGGTTTACATCCACATATTTGATGGACTCTCTTCCACACTCAAATTTAATTTACTAATTTAGTGATGTATATATAGGCAGTAGGCACATAGCATACTTGAGCATGTTCTACTTCTTCTAGCCATTGATTTGTTCCAGAGATTTGGAGATTGTTCAGTTTTTGTTTGGTTTCTTGTAAATTTAAGTAGCACAGAGTGGAGATGCAGGAAGGAAGGAAAGGGGTGCCATCTCTGCTCTCATCTCAGGGAGAATGCATTGCATCCAACATCACACAGCTGATTGGTTGGACACCACTGATAGAATTGAAGAATATTGCTAAGAAAGATGGCATAGCTGCTCGGCTGGTTGGGAAGATTGAGCCATACCAACCCCTTTCCTCTGTGAAGGATCGGAGTGCTCTCAGATTGATCGAAGATGCAGAGGAGAGAGGCTTAATCTCACCTGGCATCACAACACTAGCAGGGGTCACAAGCGGCAATCTTGGTATCGGAGTGGCGTTTGTTGCTGCTCAGAAAGGTCAGATGTAACATGCTAGTCTCCTGCAGACCCTGCACTGAATGGATTCAAGGGGCTACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCGCACTTCAGATGGACAGGACCTGAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGCAAGAAGGTTGGCAAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGAGCCAACGCAGCTGCCATCTTGAAGGTTGCAGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTCCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAGGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGTGTAATCTTCAAGGCTTCATTCTTGGTGGTTGTTCTACTCTAATATTGTAAGAAGCTTCTGTACATTGGTGTTATTACTCTTAGATTAGAATCAATTGTATGG] [+] EMBL AK110984 [GCGTGGAAGTGGAAGGATCGGAGGCGGGCGCGCGAGCGAGCGAGGCAGAGGGGACGGCGAGCCGCAGCTACCGCACGGGCCTCGAGGGATCGATCCGCGCCACCGCCGCGGCCGCCTCTGGCGAATGCGCCCGCGCGAATGCCGCCGCCGTCGCCGGAGGTGGCGGCGGCGGGCGGCGGCGGAGGGGGAGAGAGAGAGAAGAAAGGGGGAGGGGTAAAACCGTAAAAACCGTAGGAAAGCGAGGGTGAAAGTGAAAAGCGAGAGGAAGGTGGGGGTGGGGCACTGACAAGTGGGCCCCGTTTGCAGTGACACGCCATCTCCTTCCGGTAGAGGGAGCCCGTCTCGCCTCCGCTCCGATTCCGGCGGCGGCGACTCCACCGGCGGCGAATCGCCGCCGCCGGCCACCGCCACGCGCCGCTCTTGGATCATTCAATCACCCCCAAGACACCATTCCAATCCAGTTCAGTGTTAGTTCGGAATAGACATGAACAGTTCTTGGCTTCTTGATGATTTGCTCTTAGCTGCTGTTCTATGCAATTGTTCAATATTTTTTTGTGTGTATGTGTTTTTTTTAATTTTTAATTTGCTGAGGCACAGAATTTGGAATTGCTCCATAAATGATTGGAGGATTTGTTGTGACTTTTCCACAATGTTTCTTCTCATCTTGATTGGTTGCCGTGCACCCCAAGCAGCAAATTCCAACCCTTGCTTAGAATTGATGTGGTCAATCCAGGCTTCCAGCCGATTGGTGGATTATGGTGTTCTTTATATATCATGTTTTGGATACACTCCACGTTGATCTAGTCTCATATGTCAGTGAACTAACATTTTTTTTGCAAGTTGGTCTGAAGGGAAAGTTCATGGCTACTGCTCTTTTGCTGTATGGTTTACATCCACATATTTGATGGACTCTCTTCCACACTCAAATTTAATTTACTAATTTAGTGATGTATATATAGGCAGTAGGCACATAGCATACTTGAGCATGTTCTACTTCTTCTAGCCATTGATTTGTTCCAGAGATTTGGAGATTGTTCAGTTTTTGTTTGGTTTCTTGTAAATTTAAGTAGCACAGAGTGGAGATGCAGGAAGGAAGGAAAGGGGTGCCATCTCTGCTCTCATCTCAGGGAGAATGCATTGCATCCAACATCACACAGCTGATTGGTTGGACACCACTGATAGAATTGAAGAATATTGCTAAGAAAGATGGCATAGCTGCTCGGCTGGTTGGGAAGATTGAGCCATACCAACCCCTTTCCTCTGTGAAGGATCGGAGTGCTCTCAGATTGATCGAAGATGCAGAGGAGAGAGGCTTAATCTCACCTGGCATCACAACACTAGCAGGGGTCACAAGCGGCAATCTTGGTATCGGAGTGGCGTTTGTTGCTGCTCAGAAAGGTCAGATGTAACATGCTAGTCTCCTGCAGACCCTGCACTGAATGGATTCAAGGGGCTACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCGCACTTCAGATGGACAGGACCTGAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGCAAGAAGGTTGGCAAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGAGCCAACGCAGCTGCCATCTTGAAGGTTGCAGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTCCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAGGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGTGTAATCTTCAAGGCTTCATTCTTGGTGGTTGTTCTACTCTAATATTGTAAGAAGCTTCTGTACATTGGTGTTATTACTCTTAGATTAGAATCAATTGTATGG] consensusID : consensus_3510#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [CATTTGTTGCTGCTCAGAAAGGCTACAAATTCATCGCTGTCATGCCTGCTAAACTCTCGATAGATAAACAGATCCTGTTGAGATACTTGGGAGTTGAAGTGATATTGGTTGACCCTGCACTGAATGGATTCAAGGGGATACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCACATTTCAGATGGACAGGACCTTAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGTAAGAAGGTTGGCGAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGGGCAAATGCAGCTGCCATCTTGAAGGTTGCTGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTNCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAAGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGNGTAATCTTCAAGGCTTCATTCTTGGGGGGTGGTCTACTCTAAATTGGAAGAAGCTTCTGGGCATTGGGGGTANTACTCTTANATAN] [+] EMBL CB097183 [CATTTGTTGCTGCTCAGAAAGGCTACAAATTCATCGCTGTCATGCCTGCTAAACTCTCGATAGATAAACAGATCCTGTTGAGATACTTGGGAGTTGAAGTGATATTGGTTGACCCTGCACTGAATGGATTCAAGGGGATACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTGTTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCACATTTCAGATGGACAGGACCTTAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCAGGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTGATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAACATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAGATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGTAAGAAGGTTGGCGAGGGAAGAAGGATTGCTCGTTGGAATATCTTCAGGGGCAAATGCAGCTGCCATCTTGAAGGTTGCTGCAAGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTNCAGTGGTGGGGAGAGATACCTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAAGCATTCTGCTGACATGTGTAGGGGTGATCATGCAGNGTAATCTTCAAGGCTTCATTCTTGGGGGGTGGTCTACTCTAAATTGGAAGAAGCTTCTGGGCATTGGGGGTANTACTCTTANATAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3510#0 GCGTGGAAGTGGAAGGATCGGAGGCGGGCGCGCGAGCGAGCGAGGCAGAGGGGACGGCGA 60 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 GCCGCAGCTACCGCACGGGCCTCGAGGGATCGATCCGCGCCACCGCCGCGGCCGCCTCTG 120 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 GCGAATGCGCCCGCGCGAATGCCGCCGCCGTCGCCGGAGGTGGCGGCGGCGGGCGGCGGC 180 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 GGAGGGGGAGAGAGAGAGAAGAAAGGGGGAGGGGTAAAACCGTAAAAACCGTAGGAAAGC 240 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 GAGGGTGAAAGTGAAAAGCGAGAGGAAGGTGGGGGTGGGGCACTGACAAGTGGGCCCCGT 300 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TTGCAGTGACACGCCATCTCCTTCCGGTAGAGGGAGCCCGTCTCGCCTCCGCTCCGATTC 360 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CGGCGGCGGCGACTCCACCGGCGGCGAATCGCCGCCGCCGGCCACCGCCACGCGCCGCTC 420 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TTGGATCATTCAATCACCCCCAAGACACCATTCCAATCCAGTTCAGTGTTAGTTCGGAAT 480 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 AGACATGAACAGTTCTTGGCTTCTTGATGATTTGCTCTTAGCTGCTGTTCTATGCAATTG 540 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TTCAATATTTTTTTGTGTGTATGTGTTTTTTTTAATTTTTAATTTGCTGAGGCACAGAAT 600 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TTGGAATTGCTCCATAAATGATTGGAGGATTTGTTGTGACTTTTCCACAATGTTTCTTCT 660 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CATCTTGATTGGTTGCCGTGCACCCCAAGCAGCAAATTCCAACCCTTGCTTAGAATTGAT 720 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 GTGGTCAATCCAGGCTTCCAGCCGATTGGTGGATTATGGTGTTCTTTATATATCATGTTT 780 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TGGATACACTCCACGTTGATCTAGTCTCATATGTCAGTGAACTAACATTTTTTTTGCAAG 840 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TTGGTCTGAAGGGAAAGTTCATGGCTACTGCTCTTTTGCTGTATGGTTTACATCCACATA 900 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 TTTGATGGACTCTCTTCCACACTCAAATTTAATTTACTAATTTAGTGATGTATATATAGG 960 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CAGTAGGCACATAGCATACTTGAGCATGTTCTACTTCTTCTAGCCATTGATTTGTTCCAG 1020 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 AGATTTGGAGATTGTTCAGTTTTTGTTTGGTTTCTTGTAAATTTAAGTAGCACAGAGTGG 1080 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 AGATGCAGGAAGGAAGGAAAGGGGTGCCATCTCTGCTCTCATCTCAGGGAGAATGCATTG 1140 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CATCCAACATCACACAGCTGATTGGTTGGACACCACTGATAGAATTGAAGAATATTGCTA 1200 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 AGAAAGATGGCATAGCTGCTCGGCTGGTTGGGAAGATTGAGCCATACCAACCCCTTTCCT 1260 consensus_3510#1 ------------------------------------------------------------ consensus_3510#0 CTGTGAAGGATCGGAGTGCTCTCAGATTGATCGAAGATGCAGAGGAGAGAGGCTTAATCT 1320 consensus_3510#1 --------------------------------------------------CATTTGTTGC 10 ** * consensus_3510#0 CACCTGGCATCACAACA--CTAGCAGGGGTCACAAGCGGCAATCTTGGTATCGGAGTGGC 1378 consensus_3510#1 TGCTCAGAAAGGCTACAAATTCATCGCTGTCATGCCTGCTAAACTC----TCGATAGATA 66 * * * * *** * * **** * ** ** *** consensus_3510#0 GTTTGTTGCTGCTCAGAAAGGTCAGATGTAACATGCTAGTCTCCTGCAGACCCTGCACTG 1438 consensus_3510#1 AACAGATCCTGTTGAGATACTTGGGAGTTGAAGTGATATTG----GTTGACCCTGCACTG 122 * * *** * *** * * ** * * ** ** * * ************ consensus_3510#0 AATGGATTCAAGGGGCTACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTG 1498 consensus_3510#1 AATGGATTCAAGGGGATACTTGATAGAGTTGAACAGCTGAAGAAGGATATGGAGAATGTG 182 *************** ******************************************** consensus_3510#0 TTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCGCACTTCAGATGGACAGGA 1558 consensus_3510#1 TTTGTTATAGATCAATTCACCAATCCTGCTAATCCTGATGCACATTTCAGATGGACAGGA 242 ***************************************** ** *************** consensus_3510#0 CCTGAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCA 1618 consensus_3510#1 CCTTAAATATGGAAAGATACAGCAGGCAAAGTGGATATATTTGTAGCTGCATCTGGTTCA 302 *** ******************************************************** consensus_3510#0 GGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTG 1678 consensus_3510#1 GGAGGCACAGTGACAGGCGTAGGGAGGTATCTCAAGATGAAGAATCCATCCATAAAGCTG 362 ************************************************************ consensus_3510#0 ATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAAC 1738 consensus_3510#1 ATATGTGTTGAACCAGCTGAAAGTGCAGTAATTTCAGGAGGTGAACCAGCATTCCATAAC 422 ************************************************************ consensus_3510#0 ATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAG 1798 consensus_3510#1 ATCCAAGGCATAGGTCCAGGATTTATCCCAGAAATATTGGACAGATCACAAATAGATGAG 482 ************************************************************ consensus_3510#0 ATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGCAAGAAGGTTGGCAAGGGAAGAA 1858 consensus_3510#1 ATAGTAACAGTGACCACTCAAGAAGCTATGGACATGGTAAGAAGGTTGGCGAGGGAAGAA 542 ************************************* ************ ********* consensus_3510#0 GGATTGCTCGTTGGAATATCTTCAGGAGCCAACGCAGCTGCCATCTTGAAGGTTGCAGCA 1918 consensus_3510#1 GGATTGCTCGTTGGAATATCTTCAGGGGCAAATGCAGCTGCCATCTTGAAGGTTGCTGCA 602 ************************** ** ** *********************** *** consensus_3510#0 AGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTCCAGTGGTGGGGAGAGATAC 1978 consensus_3510#1 AGGGAGGAGAACAAGGGAAAGATGATCGTGACGATGTTCTNCAGTGGTGGGGAGAGATAC 662 **************************************** ******************* consensus_3510#0 CTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAGGCATTC 2038 consensus_3510#1 CTGAATTCGGAGCTATTTGCGCAGGTGAAGGAGGAATGCATCAACATCAACAAAGCATTC 722 ***************************************************** ****** consensus_3510#0 TGCTGACATGTGTAGGGGTGATCATGCAGTGTAATCTTCAAGGCTTCATTCTTGGTGGTT 2098 consensus_3510#1 TGCTGACATGTGTAGGGGTGATCATGCAGNGTAATCTTCAAGGCTTCATTCTTGGGGGGT 782 ***************************** ************************* ** * consensus_3510#0 GTTCTACTCTAATATTGTAAGAAGCTTCTGTACATTGGTGTTATTACTCTTAGATTAGAA 2158 consensus_3510#1 GGTCTACTCTAA-ATTGGAAGAAGCTTCTGGGCATTGGGGGTANTACTCTTANATAN--- 838 * ********** **** ************ ****** * ** ******** ** consensus_3510#0 TCAATTGTATGG 2170 consensus_3510#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||