cluster # 3525

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Oryza sativa
cluster # 3525 cluster # 3525 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3525#0 length = 724 sequences # 1

consensus_3525#1 length = 169 sequences # 1

consensusID : consensus_3525#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence

                              [CGCTGCGCCACGCGCCGGGTGGTGCAGTCTCGGTGCCACACGGAGGAGGTGGAGCCCGGCCGCTTCGTCCGCAAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGGCCCTCTGAACTGGTGGAATCAAAAACTGAAAATACTGAAGAAGACGTCACAGATGAAATGAAAAGCGGGTCACTATCTCTTGGTTTTCCGACCAATGAGCCCTTTGCATTTCCTGGACTTCGCAGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAGCATTGGTAGCTTTCTGGATGATGCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAAGGGAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGCAGGCACATTGAGGAAGGTACTGCAAAGGACACTAAACAGAACGACTACGCAGAATTCAGCAGCAAGATTACAGATGTGTAAGGATCTACAGTTAGCTGACGCACCTTTGGGAGCAGCTTGCCAATTTTGTATTTTGAACATCTCCATGGTTGTAATTGGAAGGGGAAGGATCAGTTTGACTGTTTTATAAGCAGAGTCGTCTGAAGTCTGAAGTGTTGCGCTTATAAGAACAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAATGAGATCAATTATGGATGGTTTTT]

[+] EMBL AK106172             [CGCTGCGCCACGCGCCGGGTGGTGCAGTCTCGGTGCCACACGGAGGAGGTGGAGCCCGGCCGCTTCGTCCGCAAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGGCCCTCTGAACTGGTGGAATCAAAAACTGAAAATACTGAAGAAGACGTCACAGATGAAATGAAAAGCGGGTCACTATCTCTTGGTTTTCCGACCAATGAGCCCTTTGCATTTCCTGGACTTCGCAGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAGCATTGGTAGCTTTCTGGATGATGCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAAGGGAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGCAGGCACATTGAGGAAGGTACTGCAAAGGACACTAAACAGAACGACTACGCAGAATTCAGCAGCAAGATTACAGATGTGTAAGGATCTACAGTTAGCTGACGCACCTTTGGGAGCAGCTTGCCAATTTTGTATTTTGAACATCTCCATGGTTGTAATTGGAAGGGGAAGGATCAGTTTGACTGTTTTATAAGCAGAGTCGTCTGAAGTCTGAAGTGTTGCGCTTATAAGAACAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAATGAGATCAATTATGGATGGTTTTT]




>consensus_3525#0
CGCTGCGCCACGCGCCGGGTGGTGCAGTCTCGGTGCCACACGGAGGAGGTGGAGCCCGGC
CGCTTCGTCCGCAAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGGCCC
TCTGAACTGGTGGAATCAAAAACTGAAAATACTGAAGAAGACGTCACAGATGAAATGAAA
AGCGGGTCACTATCTCTTGGTTTTCCGACCAATGAGCCCTTTGCATTTCCTGGACTTCGC
AGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAGCATTGGTAGCTTTCTGGATGAT
GCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAAGG
GAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGC
AGGCACATTGAGGAAGGTACTGCAAAGGACACTAAACAGAACGACTACGCAGAATTCAGC
AGCAAGATTACAGATGTGTAAGGATCTACAGTTAGCTGACGCACCTTTGGGAGCAGCTTG
CCAATTTTGTATTTTGAACATCTCCATGGTTGTAATTGGAAGGGGAAGGATCAGTTTGAC
TGTTTTATAAGCAGAGTCGTCTGAAGTCTGAAGTGTTGCGCTTATAAGAACAATTGTGTA
TATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAATGAGATCAATTATGGATGGT
TTTT

consensusID : consensus_3525#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 169
fasta sequence

                              [ACCGACATGGACTGAGGAGTAGAAAAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF321907             [ACCGACATGGACTGAGGAGTAGAAAAATTGTGTATATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3525#1
ACCGACATGGACTGAGGAGTAGAAAAATTGTGTATATTACTGTTTTAGATAAGCCTGTTT
GTGTTCCTCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3525#0      CGCTGCGCCACGCGCCGGGTGGTGCAGTCTCGGTGCCACACGGAGGAGGTGGAGCCCGGC 60
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      CGCTTCGTCCGCAAGTGCGAGAAGACCGAGCAGCTCCTCCGCGACTGCGTCGGCAGGCCC 120
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      TCTGAACTGGTGGAATCAAAAACTGAAAATACTGAAGAAGACGTCACAGATGAAATGAAA 180
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      AGCGGGTCACTATCTCTTGGTTTTCCGACCAATGAGCCCTTTGCATTTCCTGGACTTCGC 240
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      AGTGACATAGAAGCTCTTGAGAAAGGCCTTTTCGGGAGCATTGGTAGCTTTCTGGATGAT 300
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      GCTGAGAGGATGACCAATGATTTCTTGAAGTCTTTTGGTGTCCCTTCCATCAATGAAAGG 360
consensus_3525#1      ------------------------------------------ACCGACATGGACTGAGGA 18
                                                                 *   ***  *   * * 

consensus_3525#0      GAGTCGAGCTCATTTGATGGACAACCTACAGGCAGGCACATTGGTGGACAACCTGCAGGC 420
consensus_3525#1      GTAGAAAAATTGTGTATATTACTGTTT-TAGATAAGCCTGTTTGTGTTCC-TCAACAAAA 76
                      *     *  *  * *     **    *  **  * **   ** ***  *   *  **   

consensus_3525#0      AGGCACATTGAGGAAGGTACTGCAAAGGACACTAAACAGAACGACTACGCAGAATTCAGC 480
consensus_3525#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 136
                      *   * *   *  **   *    ***  * *  *** * **  *  *   * **   *  

consensus_3525#0      AGCAAGATTACAGATGTGTAAGGATCTACAGTTAGCTGACGCACCTTTGGGAGCAGCTTG 540
consensus_3525#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 169
                      *  ** *  * * *     **  *   * *                              

consensus_3525#0      CCAATTTTGTATTTTGAACATCTCCATGGTTGTAATTGGAAGGGGAAGGATCAGTTTGAC 600
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      TGTTTTATAAGCAGAGTCGTCTGAAGTCTGAAGTGTTGCGCTTATAAGAACAATTGTGTA 660
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      TATTACTGTTTTAGATAAGCCTGTTTGTGTTCCTCAACAATGAGATCAATTATGGATGGT 720
consensus_3525#1      ------------------------------------------------------------
                                                                                  

consensus_3525#0      TTTT 724
consensus_3525#1      ----