cluster # 3531

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3531 cluster # 3531 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3531#0 length = 503 sequences # 1

consensus_3531#1 length = 241 sequences # 1

consensusID : consensus_3531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [GAGGCCCTCTAGGCAGGGATGCGCGGATCGGGGCGGGCGAGGCGGCGCGGGGACGTCGCGCCATGTTCGGCCGCATGACGTGCCTCGTCGGCGGCGGCGTCTAGGACAGCCCGCGCGGGGCGGTCAGGAGGGTCTCGCCGGCTTTGACGCGGGTGCACAACGCCAACGCCTCCGCCGCCGCCGCCGCCGGAGCGGAGGGAAAGAGCGGGCTCCCCTTCCGGTCGCCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATCCACCGCTTCCACAACCTCCATCTGTTCCAGCAAGGGTGGTACCAAATGAAGATTACTGCAACGTGGGAGGAAGGAAGTTCCCAGACGCCAGCTTCACCTGCAAGGGTCGTGCAATATGAAGCTTCTGATGTTGGTGCGGACCATGCATTGGGCATTTGGAAAATAGATGATGCCGATAACAGCTTCTACACGCAGCCATTTCCAATCAAATATGCTAGACAACACATTTATCTATCA]

[+] EMBL CB618541             [GAGGCCCTCTAGGCAGGGATGCGCGGATCGGGGCGGGCGAGGCGGCGCGGGGACGTCGCGCCATGTTCGGCCGCATGACGTGCCTCGTCGGCGGCGGCGTCTAGGACAGCCCGCGCGGGGCGGTCAGGAGGGTCTCGCCGGCTTTGACGCGGGTGCACAACGCCAACGCCTCCGCCGCCGCCGCCGCCGGAGCGGAGGGAAAGAGCGGGCTCCCCTTCCGGTCGCCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATCCACCGCTTCCACAACCTCCATCTGTTCCAGCAAGGGTGGTACCAAATGAAGATTACTGCAACGTGGGAGGAAGGAAGTTCCCAGACGCCAGCTTCACCTGCAAGGGTCGTGCAATATGAAGCTTCTGATGTTGGTGCGGACCATGCATTGGGCATTTGGAAAATAGATGATGCCGATAACAGCTTCTACACGCAGCCATTTCCAATCAAATATGCTAGACAACACATTTATCTATCA]




>consensus_3531#0
GAGGCCCTCTAGGCAGGGATGCGCGGATCGGGGCGGGCGAGGCGGCGCGGGGACGTCGCG
CCATGTTCGGCCGCATGACGTGCCTCGTCGGCGGCGGCGTCTAGGACAGCCCGCGCGGGG
CGGTCAGGAGGGTCTCGCCGGCTTTGACGCGGGTGCACAACGCCAACGCCTCCGCCGCCG
CCGCCGCCGGAGCGGAGGGAAAGAGCGGGCTCCCCTTCCGGTCGCCGGACGTGATGGAGA
CGGTGCACGAGGTGGCCATTTACATCCACCGCTTCCACAACCTCCATCTGTTCCAGCAAG
GGTGGTACCAAATGAAGATTACTGCAACGTGGGAGGAAGGAAGTTCCCAGACGCCAGCTT
CACCTGCAAGGGTCGTGCAATATGAAGCTTCTGATGTTGGTGCGGACCATGCATTGGGCA
TTTGGAAAATAGATGATGCCGATAACAGCTTCTACACGCAGCCATTTCCAATCAAATATG
CTAGACAACACATTTATCTATCA

consensusID : consensus_3531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [GCCTCCGCCGCCACCGGCGGCGGAGGAGGGAAAGGGCGGCTACCCTTTCCGTCGGCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATACACCGCTTCCACAACCTCTACTCTTTCAGCAAGGGGGGGACCAAATGAAGAGTAGTGCACTCGGGAGGAGGTGTTCCAAGACACCAGCTTCATCTGCAAGGGGTCGTCGCAATATTAAGCTTCTTATGTTGGTTGCGACGACGCA]

[+] EMBL D42372               [GCCTCCGCCGCCACCGGCGGCGGAGGAGGGAAAGGGCGGCTACCCTTTCCGTCGGCGGACGTGATGGAGACGGTGCACGAGGTGGCCATTTACATACACCGCTTCCACAACCTCTACTCTTTCAGCAAGGGGGGGACCAAATGAAGAGTAGTGCACTCGGGAGGAGGTGTTCCAAGACACCAGCTTCATCTGCAAGGGGTCGTCGCAATATTAAGCTTCTTATGTTGGTTGCGACGACGCA]




>consensus_3531#1
GCCTCCGCCGCCACCGGCGGCGGAGGAGGGAAAGGGCGGCTACCCTTTCCGTCGGCGGAC
GTGATGGAGACGGTGCACGAGGTGGCCATTTACATACACCGCTTCCACAACCTCTACTCT
TTCAGCAAGGGGGGGACCAAATGAAGAGTAGTGCACTCGGGAGGAGGTGTTCCAAGACAC
CAGCTTCATCTGCAAGGGGTCGTCGCAATATTAAGCTTCTTATGTTGGTTGCGACGACGC
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3531#0      GAGGCCCTCTAGGCAGGGATGCGCGGATCGGGGCGGGCGAGGCGGCGCGGGGACGTCGCG 60
consensus_3531#1      ------------------------------------------------------------
                                                                                  

consensus_3531#0      CCATGTTCGGCCGCATGACGTGCCTCGTCGGCGGCGGCGTCTAGGACAGCCCGCGCGGGG 120
consensus_3531#1      ------------------------------------------------------------
                                                                                  

consensus_3531#0      CGGTCAGGAGGGTCTCGCCGGCTTTGACGCGGGTGCACAACGCCAACGCCTCCGCCGCCG 180
consensus_3531#1      -----------------------------------------------GCCTCCGCCGCCA 13
                                                                     ************ 

consensus_3531#0      CCGCCGCCGGAGCGGAGGGAAAGAGCGGGCTCCCCTTCCGGTCGCCGGACGTGATGGAGA 240
consensus_3531#1      CCGGCGGCGGA--GGAGGGAAAGGGCGG-CTACCCTTTCCGTCGGCGGACGTGATGGAGA 70
                      *** ** ****  ********** **** ** ***** * **** ***************

consensus_3531#0      CGGTGCACGAGGTGGCCATTTACATCCACCGCTTCCACAACCTCCATCTGTTCCAGCAAG 300
consensus_3531#1      CGGTGCACGAGGTGGCCATTTACATACACCGCTTCCACAACCTCTA-CTCTTTCAGCAAG 129
                      ************************* ****************** * ** ** *******

consensus_3531#0      GGTGGTACCAAATGAAGATTACTGCAACGTGGGAGGAAGGAAGTTCCCAGACGCCAGCTT 360
consensus_3531#1      GGGGGGACCAAATGAAGAGTAGTGCA-CTCGGGAGGAGG--TGTTCCAAGACACCAGCTT 186
                      ** ** ************ ** **** *  ******* *   ***** **** *******

consensus_3531#0      CACCTGCAAGGG-TCGT-GCAATATGAAGCTTCTGATGTTGGTGCGGACCATGCATTGGG 418
consensus_3531#1      CATCTGCAAGGGGTCGTCGCAATATTAAGCTTCTTATGTTGGTTGCGACGACGCA----- 241
                      ** ********* **** ******* ******** ********   *** * ***     

consensus_3531#0      CATTTGGAAAATAGATGATGCCGATAACAGCTTCTACACGCAGCCATTTCCAATCAAATA 478
consensus_3531#1      ------------------------------------------------------------
                                                                                  

consensus_3531#0      TGCTAGACAACACATTTATCTATCA 503
consensus_3531#1      -------------------------