These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1290 fasta sequence [TTTTTTAAAAAAATTATTTCTCTCTCTTTAATTTGTTCGTGCAAGTGCGACGCATAGCAGCCAACCTCGCCGAGGCGGAGACGACGGCGATATTGTCTCGTTCTCTCGCCTTCCCTCGTCGCCGGATTTCGTCTCGCAGGATTCGTCGCGCGCGTCCCCGTCGCCTGATTCCTTTCGCCGTCCTCCTCGCTTGATTCATCTCGCAGGCGGCCGGTTCGTCCAATGGCGAGGGAGGGAATATCCTACATATTATTGAAGAAAATGGAGGAGATAACTGGTTCACATGGCGAGCTGCTGTTGTCGTTGGGTGGAAGCAGGTAGCGGGCACATGCTCTGGCAGTGATGGTGAAGTTGGTGTGCTTGGTGACGTAATTTGATTACCTTTTGAAGTGATGAGGATGAATTGACAATTTTCCACTGGTTTTAGCATATGAGTGCACTGTGGTATGTTGCTATACACGAGCTCACAGGGATCAGGGACGCTAGAGCACTCGGGCTTGACGGCGCTTTTTTAATTTCTCCTCTTTCTCTTGGGGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGTCTTTTTCGTATATTGGGATCCAAGTGTGAAGATGGCGATCCAGATGGTGTGGTAGCATCAAGCATGGAAGATGGAGCTGTTGATAAACACATATATAGGCAATATAGAAAGTGTTATTCAAGGAGTACAGGTAGACAATTGCATAAGCACTTGGCAAGCGAAAGGATCAACTACGATATTATACCAAGTCATGAACAGTGCATCGAGGCTACCTGATGACATTCTTACGATATACATGTGTGTGCCTGAAATTTAAACTTTCTTCTACTTCAGAGGCTACATGATGACATTCTTGCTGGTTGCTGCTGCTAGCTGCTGTGCTACCTGGTGTATTCTTTTCTTGCAATTTTGCTCCTAGCTTCTATGCCAAGCTAATATGTGGTGTGGTGTGGTGTGGTGTATATATGTAACTAGCTAGCCTATAATCCTACTCGGTACGCTTACGCTCGGAGAGAAAATCGGAGATGTTGCGATGGCACAACCGTGATGTAAGCGGTGGACGGACGGACGGACGGACGAACGGAAATGGCTGTTGAAGCATATTTCAGTTGCATATTTGTTTTTCCTACTACAGTTGACTAATGCAGATGATGTGAACTACAGTAATCTGTATGTGACCAGCATGTTCATATTACAGATCATGTTGACATAGAGGAAGCATATTATGTGCTAACAATTTCTGAAGAAAAATATCTATCTATCTATCTATCTATCTATCTA] [+] EMBL AK072908 [TTTTTTAAAAAAATTATTTCTCTCTCTTTAATTTGTTCGTGCAAGTGCGACGCATAGCAGCCAACCTCGCCGAGGCGGAGACGACGGCGATATTGTCTCGTTCTCTCGCCTTCCCTCGTCGCCGGATTTCGTCTCGCAGGATTCGTCGCGCGCGTCCCCGTCGCCTGATTCCTTTCGCCGTCCTCCTCGCTTGATTCATCTCGCAGGCGGCCGGTTCGTCCAATGGCGAGGGAGGGAATATCCTACATATTATTGAAGAAAATGGAGGAGATAACTGGTTCACATGGCGAGCTGCTGTTGTCGTTGGGTGGAAGCAGGTAGCGGGCACATGCTCTGGCAGTGATGGTGAAGTTGGTGTGCTTGGTGACGTAATTTGATTACCTTTTGAAGTGATGAGGATGAATTGACAATTTTCCACTGGTTTTAGCATATGAGTGCACTGTGGTATGTTGCTATACACGAGCTCACAGGGATCAGGGACGCTAGAGCACTCGGGCTTGACGGCGCTTTTTTAATTTCTCCTCTTTCTCTTGGGGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGTCTTTTTCGTATATTGGGATCCAAGTGTGAAGATGGCGATCCAGATGGTGTGGTAGCATCAAGCATGGAAGATGGAGCTGTTGATAAACACATATATAGGCAATATAGAAAGTGTTATTCAAGGAGTACAGGTAGACAATTGCATAAGCACTTGGCAAGCGAAAGGATCAACTACGATATTATACCAAGTCATGAACAGTGCATCGAGGCTACCTGATGACATTCTTACGATATACATGTGTGTGCCTGAAATTTAAACTTTCTTCTACTTCAGAGGCTACATGATGACATTCTTGCTGGTTGCTGCTGCTAGCTGCTGTGCTACCTGGTGTATTCTTTTCTTGCAATTTTGCTCCTAGCTTCTATGCCAAGCTAATATGTGGTGTGGTGTGGTGTGGTGTATATATGTAACTAGCTAGCCTATAATCCTACTCGGTACGCTTACGCTCGGAGAGAAAATCGGAGATGTTGCGATGGCACAACCGTGATGTAAGCGGTGGACGGACGGACGGACGGACGAACGGAAATGGCTGTTGAAGCATATTTCAGTTGCATATTTGTTTTTCCTACTACAGTTGACTAATGCAGATGATGTGAACTACAGTAATCTGTATGTGACCAGCATGTTCATATTACAGATCATGTTGACATAGAGGAAGCATATTATGTGCTAACAATTTCTGAAGAAAAATATCTATCTATCTATCTATCTATCTATCTA] consensusID : consensus_3539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [TTTTTGGAATTGAACCCTTATCCTGGCTTGCAATTTCTTGTTCTGCTTGCCCGGAATGTGTAGCATGCAATGGCTCCTCCACATTGGCAAGGGCATTTAAATCTTTGTTGCGCTTATAGGCTTCACGACGCTTTTTTAGTTTCTCCTCTTTCTCTTGGAGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGGTCGTTCTTCGTATATTTGGATCCAAAAGTGGAGATGGCGATCCAAATGATGTGGTACCAGCATCAAGCATGGAAGATGGAGCTTGACCATCAAACATATCACTCTCATTGGTGTCATCGTCAAATATATCTTCATCACCATCGATGAATACTTGTGATGGATGCTCTACATTGTCGGCACCTTGATTTGTTAAACACATATTTTCGGTATTTGTATATGCTTGGCTCCTTAGGAGGGTCTATGCTGTTGGATGTTCTGTGTGCATATCGAAGGATCTTCTCCTAGGTGACACAGAAGTTCTCGTGTACCATC] [-] EMBL BI804587 [TTTTTGGAATTGAACCCTTATCCTGGCTTGCAATTTCTTGTTCTGCTTGCCCGGAATGTGTAGCATGCAATGGCTCCTCCACATTGGCAAGGGCATTTAAATCTTTGTTGCGCTTATAGGCTTCACGACGCTTTTTTAGTTTCTCCTCTTTCTCTTGGAGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGGTCGTTCTTCGTATATTTGGATCCAAAAGTGGAGATGGCGATCCAAATGATGTGGTACCAGCATCAAGCATGGAAGATGGAGCTTGACCATCAAACATATCACTCTCATTGGTGTCATCGTCAAATATATCTTCATCACCATCGATGAATACTTGTGATGGATGCTCTACATTGTCGGCACCTTGATTTGTTAAACACATATTTTCGGTATTTGTATATGCTTGGCTCCTTAGGAGGGTCTATGCTGTTGGATGTTCTGTGTGCATATCGAAGGATCTTCTCCTAGGTGACACAGAAGTTCTCGTGTACCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3539#0 TTTTTTAAAAAAATTATTTCTCTCTCTTTAATTTGTTCGTGCAAGTGCGACGCATAGCAG 60 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 CCAACCTCGCCGAGGCGGAGACGACGGCGATATTGTCTCGTTCTCTCGCCTTCCCTCGTC 120 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 GCCGGATTTCGTCTCGCAGGATTCGTCGCGCGCGTCCCCGTCGCCTGATTCCTTTCGCCG 180 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 TCCTCCTCGCTTGATTCATCTCGCAGGCGGCCGGTTCGTCCAATGGCGAGGGAGGGAATA 240 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 TCCTACATATTATTGAAGAAAATGGAGGAGATAACTGGTTCACATGGCGAGCTGCTGTTG 300 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 TCGTTGGGTGGAAGCAGGTAGCGGGCACATGCTCTGGCAGTGATGGTGAAGTTGGTGTGC 360 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 TTGGTGACGTAATTTGATTACCTTTTGAAGTGA----TGAGGATGAATTGACAATTTTCC 416 consensus_3539#1 --------------------TTTTTGGAATTGAACCCTTATCCTGGCTTG-CAATTTCTT 39 *** *** *** * * ** *** ****** consensus_3539#0 ACTGGTTTTAGCATATGAGTGCACTGTGGTATG-TTGCTATACACGAGCTCACAGGGATC 475 consensus_3539#1 GTTCTGCTTGCCCGGAATGTGTAGCATGCAATGGCTCCTCCACATTGGC--AAGGGCATT 97 * ** * *** * ** *** * ** *** ** * ** ** consensus_3539#0 AGGGACGCTAGAGCACTCG--GGCTTGACGGCGCTTTTTTAATTTCTCCTCTTTCTCTTG 533 consensus_3539#1 TAAATCTTTGTTGCGCTTATAGGCTTCACGACGCTTTTTTAGTTTCTCCTCTTTCTCTTG 157 * * ** ** ***** *** ********** ****************** consensus_3539#0 GGGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGTC--TTTTTCGTATATTGGGATCC 591 consensus_3539#1 GAGAGTCATTTGCGCATATCGCTCCCGATCTCTCTGGTCGTTCTTCGTATATTTGGATCC 217 * ********************************** ** ********** ****** consensus_3539#0 AAGTGTGAAGATGGCGATCCAGATGGTGTGGTA---GCATCAAGCATGGAAGATGGAGCT 648 consensus_3539#1 AAAAGTGGAGATGGCGATCCAAATGATGTGGTACCAGCATCAAGCATGGAAGATGGAGCT 277 ** *** ************* *** ******* ************************ consensus_3539#0 GTTGATAAACACATATATAGGCAATATAGAAAGTGTTATTCAAGGAGTACAGGTAGACAA 708 consensus_3539#1 --TGACCATCAAACATATCACTCTCATTGGTGTCATCGTCAAATATATCTTCATC-ACCA 334 *** * ** * **** ** * * * ** * * ** * consensus_3539#0 TTGCATAAGCACTTGGCAAGCGAAAGGATCAACTACGATATTATACCAAGTCATGAACAG 768 consensus_3539#1 TCG-ATGAATACTTGTGATG---GATGCTCTACATTGTCGGCACCTTGATTTGTTAAACA 390 * * ** * ***** * * * * ** ** * * * * * ** consensus_3539#0 TGCATCGAGGCTACCTGATGACATTCTTACGATATACATGTGTGTGCCTGAAATTTAAAC 828 consensus_3539#1 CATATTTTCGGTATTTG--TATATGCTTG-GCTCCTTAGGAGGGTCTATGCTGTTGGATG 447 ** * ** ** * ** *** * * * * * ** ** ** * consensus_3539#0 TTTCTTCTACTTCAGAGGCTACATGATGACATTCTTGCTGGTTGCTGCTGCTAGCTGCTG 888 consensus_3539#1 TTCTGTGTGCAT-----ATCGAAGGATCTTCTCCTAGGTGAC-ACAGAAGTT--CTCGTG 499 ** * * * * * *** * ** * ** * * * * ** ** consensus_3539#0 TGCTACCTGGTGTATTCTTTTCTTGCAATTTTGCTCCTAGCTTCTATGCCAAGCTAATAT 948 consensus_3539#1 TACCATC----------------------------------------------------- 506 * * * * consensus_3539#0 GTGGTGTGGTGTGGTGTGGTGTATATATGTAACTAGCTAGCCTATAATCCTACTCGGTAC 1008 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 GCTTACGCTCGGAGAGAAAATCGGAGATGTTGCGATGGCACAACCGTGATGTAAGCGGTG 1068 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 GACGGACGGACGGACGGACGAACGGAAATGGCTGTTGAAGCATATTTCAGTTGCATATTT 1128 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 GTTTTTCCTACTACAGTTGACTAATGCAGATGATGTGAACTACAGTAATCTGTATGTGAC 1188 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 CAGCATGTTCATATTACAGATCATGTTGACATAGAGGAAGCATATTATGTGCTAACAATT 1248 consensus_3539#1 ------------------------------------------------------------ consensus_3539#0 TCTGAAGAAAAATATCTATCTATCTATCTATCTATCTATCTA 1290 consensus_3539#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||