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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1350 fasta sequence
[ACCGCGCATCCTCTCCCGCATCTCCCTCTCTTCCGCATTCGCCGCGACTCCCCCGCACCTCCCTCCCATACCGCATCCGCGCCTCTCTCTCCCCTCCCGCTCCGTCGTCAAGTGCGCCGCCGCCGCCACCGAGGCCTTCAATCCTCCATCGTCAAGGGCGCCGGCTCGCCACGCTCTCCATCGCCCCGACACAGGACGCCCTCATCTCTCCCCTGCCGTCGCGCCGTCGCCGATTCACCTCCGCCAGGTCGCCGCCTATCCCCAGCAGCCGCCAGTCCACGCTCGCCCTCGCCGTTGCACAGATCGACACCGCCGCCGACCCGATGCTCGCCCTCGCGCATTCATCGCCACCCTATCTGGCCCCTCTGCCCATCGCGCCAACTCGCCCTAGCGCCGTCTCGCCGCCTCGCGCCATCTCTGCCGGTCGCCGGTGCACCGCATCAAGTGGTCGCCGATCCCATCGCCGACCGCTCTCCATCGGGACTTCATCAAATCGCCGCCGTGCCGCCTGACAACTATCCCCGCCAGTCTCTGTAGCGCGCTCGGTCTCCATCACGTCAACTCGCCTTCACACCAACACCGATCCTCTCCGGGCCCTGACGTCCGGTGTCTAGAGCTCTACGAAGCTAGGAGGGGAGCAAAGGAGGTGCTGGGACTGATGGAAGGGGAGCTGTTCAGGTGCTTGCTCGGTCATCTGGTGAAGATCAAGATACCATCCATGTGCTGGATAGGTCTCAGATAGGTGGGCATCAAGTTCAGCTTTCATGGAGCCTACTCCTCATCAGAACAAGCAGGTTCATGTACAGAGTTAATTGCTTGGCCGTTGATGCATGAAGTAGGGTCAATTGAGCTGAGGTAGAAAGTGATAATAGAAAAGTGTGCCAATCAAAGAGCTGTTGTGGGTTCCCAGTGACAAAAAAGATGAGTCTTTAGAAGGACTTCTAGAGCAAAGTGTTACAGCAAGGTTTGTTGAAAATTTAGGAGTTGGCACAAGAATGGAAGAAGACGGAACATATCTACTATAGTATATGCGAGATTATGCAATGCAATACAAGAAGGGGAGAAGATGGGAACTCTGAATTATCGAAGTCACCAACAATAACTTTTGATGAAGTAGTACAACAAGGTTTTAGGCATATGCTGCACTTTCTTTTCTGCTCCAATGCGATGGTGACGGAAGAATCATAGTTGTAAGCAAAAAATTTAGTGGACAATATGAATATGCACATCTGAAATTTGTGTTTCTTTTTTGTATAGATAGTCTTTTTGAAGGAGCTATAACCTTGCTCTGCATCTTACTCTGCCACTGAGACCGCTAACCATCTTGTTTGGAGATAACACTTAATGTAT]
[+] EMBL AK106716 [ACCGCGCATCCTCTCCCGCATCTCCCTCTCTTCCGCATTCGCCGCGACTCCCCCGCACCTCCCTCCCATACCGCATCCGCGCCTCTCTCTCCCCTCCCGCTCCGTCGTCAAGTGCGCCGCCGCCGCCACCGAGGCCTTCAATCCTCCATCGTCAAGGGCGCCGGCTCGCCACGCTCTCCATCGCCCCGACACAGGACGCCCTCATCTCTCCCCTGCCGTCGCGCCGTCGCCGATTCACCTCCGCCAGGTCGCCGCCTATCCCCAGCAGCCGCCAGTCCACGCTCGCCCTCGCCGTTGCACAGATCGACACCGCCGCCGACCCGATGCTCGCCCTCGCGCATTCATCGCCACCCTATCTGGCCCCTCTGCCCATCGCGCCAACTCGCCCTAGCGCCGTCTCGCCGCCTCGCGCCATCTCTGCCGGTCGCCGGTGCACCGCATCAAGTGGTCGCCGATCCCATCGCCGACCGCTCTCCATCGGGACTTCATCAAATCGCCGCCGTGCCGCCTGACAACTATCCCCGCCAGTCTCTGTAGCGCGCTCGGTCTCCATCACGTCAACTCGCCTTCACACCAACACCGATCCTCTCCGGGCCCTGACGTCCGGTGTCTAGAGCTCTACGAAGCTAGGAGGGGAGCAAAGGAGGTGCTGGGACTGATGGAAGGGGAGCTGTTCAGGTGCTTGCTCGGTCATCTGGTGAAGATCAAGATACCATCCATGTGCTGGATAGGTCTCAGATAGGTGGGCATCAAGTTCAGCTTTCATGGAGCCTACTCCTCATCAGAACAAGCAGGTTCATGTACAGAGTTAATTGCTTGGCCGTTGATGCATGAAGTAGGGTCAATTGAGCTGAGGTAGAAAGTGATAATAGAAAAGTGTGCCAATCAAAGAGCTGTTGTGGGTTCCCAGTGACAAAAAAGATGAGTCTTTAGAAGGACTTCTAGAGCAAAGTGTTACAGCAAGGTTTGTTGAAAATTTAGGAGTTGGCACAAGAATGGAAGAAGACGGAACATATCTACTATAGTATATGCGAGATTATGCAATGCAATACAAGAAGGGGAGAAGATGGGAACTCTGAATTATCGAAGTCACCAACAATAACTTTTGATGAAGTAGTACAACAAGGTTTTAGGCATATGCTGCACTTTCTTTTCTGCTCCAATGCGATGGTGACGGAAGAATCATAGTTGTAAGCAAAAAATTTAGTGGACAATATGAATATGCACATCTGAAATTTGTGTTTCTTTTTTGTATAGATAGTCTTTTTGAAGGAGCTATAACCTTGCTCTGCATCTTACTCTGCCACTGAGACCGCTAACCATCTTGTTTGGAGATAACACTTAATGTAT]
consensusID : consensus_354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence
[AATAATCTGATATAAAGTAAGAGGACAAACCAGAACAAATTGTCTTTCACAGATATCTTTTATGCACATAAAAAGAAAAGGGTTTGTCAAATTAACTCCTTTTTGCTACAGGTTCCAGTATTGTCTATTAAATCTAATGTGCTTCTAATTAATCCTATATACACAATATGCTAAATTTTCAGTATTTTAAGCACTGTGCTACCATTTGCAGAAAAATAATTGGTTAATAAACTAACAGTACACTGCTATTACCAGCTGTTCTGATAAGTGGTACTTAGTTGGGTGTTGTAAGTATGCAGGTAGAAAGTGATAATAGAAAAGTGTGCCAATCAAAGAGCTGTTGTGGGTTCCCAGTGACAAAAAAGATGAGTCTTTAGAAGGACTTCTAGAGCAAAGTGTTACAGCAAGGTTTGTTGAAAATTTAGGAGTTGGCACAAGAATGGAAGAAGACGGAACATATCTACTATGGTATATGCGAGATTATGCAATGCAATACAAGAAGGGGAGAAGATGGGAACTCTGAATTATCGAAGTCACCAACAATAACTTTTGATGAAGTAGTACAACAAGGTTTTAGGCATATGCTGCACTTTCTTTTCTGCTCCAATGCGATGGTGACGGAAGAATCATAGTTGTAAGCAAAAAATTTAGTGGACAATATGAATATGCATATCTGAAATTTGTGATTCTTTTTTGTATAGATAGTCTTTTTGAAGGAGCTATAACCTTGCTCTGCATCTTACTCTGCCACTGAGACCGCTAACCATCTTGTTTGGAGATAACACTTAATGTATACTATGATTTAAGTCTG]
[-] EMBL CB634128 [AATAATCTGATATAAAGTAAGAGGACAAACCAGAACAAATTGTCTTTCACAGATATCTTTTATGCACATAAAAAGAAAAGGGTTTGTCAAATTAACTCCTTTTTGCTACAGGTTCCAGTATTGTCTATTAAATCTAATGTGCTTCTAATTAATCCTATATACACAATATGCTAAATTTTCAGTATTTTAAGCACTGTGCTACCATTTGCAGAAAAATAATTGGTTAATAAACTAACAGTACACTGCTATTACCAGCTGTTCTGATAAGTGGTACTTAGTTGGGTGTTGTAAGTATGCAGGTAGAAAGTGATAATAGAAAAGTGTGCCAATCAAAGAGCTGTTGTGGGTTCCCAGTGACAAAAAAGATGAGTCTTTAGAAGGACTTCTAGAGCAAAGTGTTACAGCAAGGTTTGTTGAAAATTTAGGAGTTGGCACAAGAATGGAAGAAGACGGAACATATCTACTATGGTATATGCGAGATTATGCAATGCAATACAAGAAGGGGAGAAGATGGGAACTCTGAATTATCGAAGTCACCAACAATAACTTTTGATGAAGTAGTACAACAAGGTTTTAGGCATATGCTGCACTTTCTTTTCTGCTCCAATGCGATGGTGACGGAAGAATCATAGTTGTAAGCAAAAAATTTAGTGGACAATATGAATATGCATATCTGAAATTTGTGATTCTTTTTTGTATAGATAGTCTTTTTGAAGGAGCTATAACCTTGCTCTGCATCTTACTCTGCCACTGAGACCGCTAACCATCTTGTTTGGAGATAACACTTAATGTATACTATGATTTAAGTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_354#0 ACCGCGCATCCTCTCCCGCATCTCCCTCTCTTCCGCATTCGCCGCGACTCCCCCGCACCT 60
consensus_354#1 ------------------------------------------------------------
consensus_354#0 CCCTCCCATACCGCATCCGCGCCTCTCTCTCCCCTCCCGCTCCGTCGTCAAGTGCGCCGC 120
consensus_354#1 ------------------------------------------------------------
consensus_354#0 CGCCGCCACCGAGGCCTTCAATCCTCCATCGTCAAGGGCGCCGGCTCGCCACGCTCTCCA 180
consensus_354#1 ------------------------------------------------------------
consensus_354#0 TCGCCCCGACACAGGACGCCCTCATCTCTCCCCTGCCGTCGCGCCGTCGCCGATTCACCT 240
consensus_354#1 ------------------------------------------------------------
consensus_354#0 CCGCCAGGTCGCCGCCTATCCCCAGCAGCCGCCAGTCCACGCTCGCCCTCGCCGTTGCAC 300
consensus_354#1 ------------------------------------------------------------
consensus_354#0 AGATCGACACCGCCGCCGACCCGATGCTCGCCCTCGCGCATTCATCGCCACCCTATCTGG 360
consensus_354#1 ------------------------------------------------------------
consensus_354#0 CCCCTCTGCCCATCGCGCCAACTCGCCCTAGCGCCGTCTCGCCGCCTCGCGCCATCTCTG 420
consensus_354#1 ------------------------------------------------------------
consensus_354#0 CCGGTCGCCGGTGCACCGCATCAAGTGGTCGCCGATCCCATCGCCGACCGCTCTCCATCG 480
consensus_354#1 ------------------------------------------------------------
consensus_354#0 GGACTTCATCAAATCGCCGCCGTGCCGCCTGACAACTATCCCCGCCAGTCTCTGTAGCGC 540
consensus_354#1 ------------------------------------------------------------
consensus_354#0 GCTCGGTCTCCATCACGTCAACTC-GCCTTCACACCAACACCGATCCTCTCCGGGCCCTG 599
consensus_354#1 ----AATAATC-TGATATAAAGTAAGAGGACAAACCAGAACAAATTGTCTTT---CACAG 52
* * * * * ** * * ** **** ** ** *** * * *
consensus_354#0 ACGTCCGGTGTCTAGAGCTCTACGAAGCTAGGAGGGGAGCAAAGGAGGTGCTGGG-ACTG 658
consensus_354#1 ATATCTTTTATGCACA----TAAAAAGAAAAGGGTTTGTCAAATTAACTCCTTTTTGCTA 108
* ** * * * * ** *** * * * **** * * ** **
consensus_354#0 ATGGAAGGGGAGCTGTTCAGGTGCTTGCTCGGTCATCTGGTGAAGATCAAGATACCATCC 718
consensus_354#1 CAGGTTCCAGTATTGTCTATTAAATCTAATGTGCTTCTAATTAAT-CCTATATACA--CA 165
** * *** * * * * *** * ** * * **** *
consensus_354#0 ATGTGCTGGATAGGTCTCAGATAGGTGGGCATCAAGTT-CAGCTTTCATGGAGCCTACTC 777
consensus_354#1 ATATGCTAAAT---TTTCAGTATTTTAAGCACTGTGCTACCATTTGCAGAAAAATAATTG 222
** **** ** * **** * *** * * * ** ** * * *
consensus_354#0 CTCATCAGAACAAGCAGGTTCATGTACAGAGTTAATTGCT-TGGCCGTTGATGCATGAAG 836
consensus_354#1 GTTAATA-AACTAACAG-TACACTGCTATTACCAGCTGTTCTGATAAGTGGTACTTAGTT 280
* * * *** * *** * ** * * ** * ** ** * * *
consensus_354#0 TAGGGTCAATTGAGCTGAGGTAGAAAGTGATAATAGAAAAGTGTGCCAATCAAAGAGCTG 896
consensus_354#1 GGGTGTTGTAAGTATGCAGGTAGAAAGTGATAATAGAAAAGTGTGCCAATCAAAGAGCTG 340
* ** * *******************************************
consensus_354#0 TTGTGGGTTCCCAGTGACAAAAAAGATGAGTCTTTAGAAGGACTTCTAGAGCAAAGTGTT 956
consensus_354#1 TTGTGGGTTCCCAGTGACAAAAAAGATGAGTCTTTAGAAGGACTTCTAGAGCAAAGTGTT 400
************************************************************
consensus_354#0 ACAGCAAGGTTTGTTGAAAATTTAGGAGTTGGCACAAGAATGGAAGAAGACGGAACATAT 1016
consensus_354#1 ACAGCAAGGTTTGTTGAAAATTTAGGAGTTGGCACAAGAATGGAAGAAGACGGAACATAT 460
************************************************************
consensus_354#0 CTACTATAGTATATGCGAGATTATGCAATGCAATACAAGAAGGGGAGAAGATGGGAACTC 1076
consensus_354#1 CTACTATGGTATATGCGAGATTATGCAATGCAATACAAGAAGGGGAGAAGATGGGAACTC 520
******* ****************************************************
consensus_354#0 TGAATTATCGAAGTCACCAACAATAACTTTTGATGAAGTAGTACAACAAGGTTTTAGGCA 1136
consensus_354#1 TGAATTATCGAAGTCACCAACAATAACTTTTGATGAAGTAGTACAACAAGGTTTTAGGCA 580
************************************************************
consensus_354#0 TATGCTGCACTTTCTTTTCTGCTCCAATGCGATGGTGACGGAAGAATCATAGTTGTAAGC 1196
consensus_354#1 TATGCTGCACTTTCTTTTCTGCTCCAATGCGATGGTGACGGAAGAATCATAGTTGTAAGC 640
************************************************************
consensus_354#0 AAAAAATTTAGTGGACAATATGAATATGCACATCTGAAATTTGTGTTTCTTTTTTGTATA 1256
consensus_354#1 AAAAAATTTAGTGGACAATATGAATATGCATATCTGAAATTTGTGATTCTTTTTTGTATA 700
****************************** ************** **************
consensus_354#0 GATAGTCTTTTTGAAGGAGCTATAACCTTGCTCTGCATCTTACTCTGCCACTGAGACCGC 1316
consensus_354#1 GATAGTCTTTTTGAAGGAGCTATAACCTTGCTCTGCATCTTACTCTGCCACTGAGACCGC 760
************************************************************
consensus_354#0 TAACCATCTTGTTTGGAGATAACACTTAATGTAT----------------- 1350
consensus_354#1 TAACCATCTTGTTTGGAGATAACACTTAATGTATACTATGATTTAAGTCTG 811
**********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||