These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1632 fasta sequence [GCCGGCACCGAAGCCAACAGGCGGAGCAAAAATGGCGATCGCGATCTCTCAGGAGGCGTTCGACGCCATGGTGCGGGAGAACATGGAGGACCTCGGCATGGACGCCGACGAGGCCCTCGCCGACGCCGTCGACGCCCTCACCCTCCAAGGTGCCGACCTCTCCGGGATCATCAAGCGCGTGCCTGGAGAGGCCGCCGCGGCGGAGGTGAGCCCGGTGATGCGGGTGCTGGACGAGGTGAAGGCCTCTTCTGCCAGTGACAGTGACAGTGGCGGCAGGTCCGAGGAGGATGCTGAGAGGTTGGCCTCTTTGCTCGACGAGTTGCGCGAGCTGTGCTCCGGCGATGGGTTGGAGAATGCGGCGGTCGCTGCTCGGAATGGCGGCGTGGAGGCGCTCGTCGCCCTGTGCGCGTCGGCTGGGGTTAAGCAGGAGAGACTACTTGCCTCGGGCTTGAAGGCGCTAAGCTCCTTGCTCCGCGATGTTGGAAGCACTGAAAAGTTCAGGCAAAGCGAAGGGCCCCAAGTTGTCATGGGTATTTTGAAAGGAGGTTCAGAAAGTTCAGATATACTGGAAGGTGGCTTTAGGGTTGTGGCTTCAGCATCTGCAGGCAATGAAGTTGTTAAAGAGTGCTTTATGGTCCTGAAGGTTGATGAACTCATTTTTCAAGTTATGGGGGAGAAATCAAATAGCAATGTGCAAAGCTTGTATGATGCCATACGTGTTCTATTGACACCTGATGACAATCGTGTGGTGGCTTCTCAAGTATATGGATATTCTCGGAGGTTCGCAGAAACTGGGATTGCAGCAGTTCTTGTCAATGCACTACGTGAGAAAGTTGCCCCTTCCAGCTTACCATCAGCTTGTGCGGCTCTGAAGGCAATTGCTGTCAATGATGAAATATGCAGATCCATATCTGAAAATGGTGGGATTGATGTGCTTCTTCGCTGTATTGATGAGGCTAGTGAACAAAAGAACAAAGTTATAGCAAAATCTTGCTGCTCTCTGCTGTCCAAGCTGGCTGGAAGTGATGCAAACAAGACTACTATCATTGAACGAGGTGGTTTTGATAAGTTCTTGAAGTTGACATCGAGATTTTCTGAAGACCCACCAATAATACAAGAGGTAATGTCTATGGTGACTATCCTTACACTGCGGTCACCAGAAAATGCAGCTCGTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGACGATCTTGCTTAATGATGGTGTGGAGAAGCTTATTAGGAAAACCAAGATGATGCACGGGAGCTGCAAAGATGCTGCCACATCTGCCTTGAGGGATCTGGGCGTGGACAACTACAATGCATAGACAGGGAAATGAATTTACTGTGCGTAAATTTTGGCAATCTGAGGATGTTTTGGGGGAATTAATGGTGTGTTTGGGTTGATAGGATTTTGGCTATGCTTGTGCGTGGTCTCAATTTTGTGGAATTAGTGGTGTGTTGGGTTGCTGCCCCTGCAAACTGCTTCAGCTATGAATTTGTGGAACAATAGTTCAGTAACACGAGGCGTTGAAAA] [+] EMBL AK073828 [GCCGGCACCGAAGCCAACAGGCGGAGCAAAAATGGCGATCGCGATCTCTCAGGAGGCGTTCGACGCCATGGTGCGGGAGAACATGGAGGACCTCGGCATGGACGCCGACGAGGCCCTCGCCGACGCCGTCGACGCCCTCACCCTCCAAGGTGCCGACCTCTCCGGGATCATCAAGCGCGTGCCTGGAGAGGCCGCCGCGGCGGAGGTGAGCCCGGTGATGCGGGTGCTGGACGAGGTGAAGGCCTCTTCTGCCAGTGACAGTGACAGTGGCGGCAGGTCCGAGGAGGATGCTGAGAGGTTGGCCTCTTTGCTCGACGAGTTGCGCGAGCTGTGCTCCGGCGATGGGTTGGAGAATGCGGCGGTCGCTGCTCGGAATGGCGGCGTGGAGGCGCTCGTCGCCCTGTGCGCGTCGGCTGGGGTTAAGCAGGAGAGACTACTTGCCTCGGGCTTGAAGGCGCTAAGCTCCTTGCTCCGCGATGTTGGAAGCACTGAAAAGTTCAGGCAAAGCGAAGGGCCCCAAGTTGTCATGGGTATTTTGAAAGGAGGTTCAGAAAGTTCAGATATACTGGAAGGTGGCTTTAGGGTTGTGGCTTCAGCATCTGCAGGCAATGAAGTTGTTAAAGAGTGCTTTATGGTCCTGAAGGTTGATGAACTCATTTTTCAAGTTATGGGGGAGAAATCAAATAGCAATGTGCAAAGCTTGTATGATGCCATACGTGTTCTATTGACACCTGATGACAATCGTGTGGTGGCTTCTCAAGTATATGGATATTCTCGGAGGTTCGCAGAAACTGGGATTGCAGCAGTTCTTGTCAATGCACTACGTGAGAAAGTTGCCCCTTCCAGCTTACCATCAGCTTGTGCGGCTCTGAAGGCAATTGCTGTCAATGATGAAATATGCAGATCCATATCTGAAAATGGTGGGATTGATGTGCTTCTTCGCTGTATTGATGAGGCTAGTGAACAAAAGAACAAAGTTATAGCAAAATCTTGCTGCTCTCTGCTGTCCAAGCTGGCTGGAAGTGATGCAAACAAGACTACTATCATTGAACGAGGTGGTTTTGATAAGTTCTTGAAGTTGACATCGAGATTTTCTGAAGACCCACCAATAATACAAGAGGTAATGTCTATGGTGACTATCCTTACACTGCGGTCACCAGAAAATGCAGCTCGTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGACGATCTTGCTTAATGATGGTGTGGAGAAGCTTATTAGGAAAACCAAGATGATGCACGGGAGCTGCAAAGATGCTGCCACATCTGCCTTGAGGGATCTGGGCGTGGACAACTACAATGCATAGACAGGGAAATGAATTTACTGTGCGTAAATTTTGGCAATCTGAGGATGTTTTGGGGGAATTAATGGTGTGTTTGGGTTGATAGGATTTTGGCTATGCTTGTGCGTGGTCTCAATTTTGTGGAATTAGTGGTGTGTTGGGTTGCTGCCCCTGCAAACTGCTTCAGCTATGAATTTGTGGAACAATAGTTCAGTAACACGAGGCGTTGAAAA] consensusID : consensus_356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [GCCGCTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGTATGCTGTACAATTCACAAGCACTACTGTCTGCTGGCATGACCTATTCAGAATTAAGGCATTTACAGTTCGATAGTAACATGCTTCTANTATCAGAATGT] [+] EMBL AU225273 [GCCGCTGCAATGGGAGCAGGGTATGGCACTTTGGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCTTATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGTATGCTGTACAATTCACAAGCACTACTGTCTGCTGGCATGACCTATTCAGAATTAAGGCATTTACAGTTCGATAGTAACATGCTTCTANTATCAGAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_356#0 GCCGGCACCGAAGCCAACAGGCGGAGCAAAAATGGCGATCGCGATCTCTCAGGAGGCGTT 60 consensus_356#1 ------------------------------------------------------------ consensus_356#0 CGACGCCATGGTGCGGGAGAACATGGAGGACCTCGGCATGGACGCCGACGAGGCCCTCGC 120 consensus_356#1 ------------------------------------------------------------ consensus_356#0 CGACGCCGTCGACGCCCTCACCCTCCAAGGTGCCGACCTCTCCGGGATCATCAAGCGCGT 180 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GCCTGGAGAGGCCGCCGCGGCGGAGGTGAGCCCGGTGATGCGGGTGCTGGACGAGGTGAA 240 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GGCCTCTTCTGCCAGTGACAGTGACAGTGGCGGCAGGTCCGAGGAGGATGCTGAGAGGTT 300 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GGCCTCTTTGCTCGACGAGTTGCGCGAGCTGTGCTCCGGCGATGGGTTGGAGAATGCGGC 360 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GGTCGCTGCTCGGAATGGCGGCGTGGAGGCGCTCGTCGCCCTGTGCGCGTCGGCTGGGGT 420 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TAAGCAGGAGAGACTACTTGCCTCGGGCTTGAAGGCGCTAAGCTCCTTGCTCCGCGATGT 480 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TGGAAGCACTGAAAAGTTCAGGCAAAGCGAAGGGCCCCAAGTTGTCATGGGTATTTTGAA 540 consensus_356#1 ------------------------------------------------------------ consensus_356#0 AGGAGGTTCAGAAAGTTCAGATATACTGGAAGGTGGCTTTAGGGTTGTGGCTTCAGCATC 600 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TGCAGGCAATGAAGTTGTTAAAGAGTGCTTTATGGTCCTGAAGGTTGATGAACTCATTTT 660 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TCAAGTTATGGGGGAGAAATCAAATAGCAATGTGCAAAGCTTGTATGATGCCATACGTGT 720 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TCTATTGACACCTGATGACAATCGTGTGGTGGCTTCTCAAGTATATGGATATTCTCGGAG 780 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GTTCGCAGAAACTGGGATTGCAGCAGTTCTTGTCAATGCACTACGTGAGAAAGTTGCCCC 840 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TTCCAGCTTACCATCAGCTTGTGCGGCTCTGAAGGCAATTGCTGTCAATGATGAAATATG 900 consensus_356#1 ------------------------------------------------------------ consensus_356#0 CAGATCCATATCTGAAAATGGTGGGATTGATGTGCTTCTTCGCTGTATTGATGAGGCTAG 960 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TGAACAAAAGAACAAAGTTATAGCAAAATCTTGCTGCTCTCTGCTGTCCAAGCTGGCTGG 1020 consensus_356#1 ------------------------------------------------------------ consensus_356#0 AAGTGATGCAAACAAGACTACTATCATTGAACGAGGTGGTTTTGATAAGTTCTTGAAGTT 1080 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GACATCGAGATTTTCTGAAGACCCACCAATAATACAAGAGGTAATGTCTATGGTGACTAT 1140 consensus_356#1 ------------------------------------------------------------ consensus_356#0 CCTTACACTGCGGTCACCAGAAAATGCAGCTCGTGCAATGGGAGCAGGGTATGGCACTTT 1200 consensus_356#1 ----------------------------GCCGCTGCAATGGGAGCAGGGTATGGCACTTT 32 ** *************************** consensus_356#0 GGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCT 1260 consensus_356#1 GGCTATACAGGCAATGCAAAAGTTCCCTTCTTCTGCTCAAACTCAGAAGCAAGCCTGCCT 92 ************************************************************ consensus_356#0 TATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGACGATCTTGCTTAATGATGG 1320 consensus_356#1 TATGATCCGTAATCTTGTCGTCAGAAACCCTGAAAACCGGT--ATGCTGTACAATTCACA 150 **************************************** ** ** *** consensus_356#0 TGTGGAGAAGCTTATTAGGAAAACCAAGAT-GATGCACGGGAGCTGCAAAGATGCTGCCA 1379 consensus_356#1 AGCACTACTGTCTGCTGGCATGACCTATTCAGAATTAAGGCATTTACAGTTCGATAGTAA 210 * * * * * * *** * ** * ** * * ** * * consensus_356#0 CATCTGCCTTGAGGGATCTGGGCGTGGACAACTACAATGCATAGACAGGGAAATGAATTT 1439 consensus_356#1 CATG---CTTCTANTATCAGAATGT----------------------------------- 232 *** *** *** * ** consensus_356#0 ACTGTGCGTAAATTTTGGCAATCTGAGGATGTTTTGGGGGAATTAATGGTGTGTTTGGGT 1499 consensus_356#1 ------------------------------------------------------------ consensus_356#0 TGATAGGATTTTGGCTATGCTTGTGCGTGGTCTCAATTTTGTGGAATTAGTGGTGTGTTG 1559 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GGTTGCTGCCCCTGCAAACTGCTTCAGCTATGAATTTGTGGAACAATAGTTCAGTAACAC 1619 consensus_356#1 ------------------------------------------------------------ consensus_356#0 GAGGCGTTGAAAA 1632 consensus_356#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||