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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2249 fasta sequence
[GACGCATTGGCCGCCGCTGCAGCCGTGGCCGTGGCGTCCGACAAGATGCGCTCCGTGACCCTGGGCGGTTCGATCCAGAGGGTGATGCGGAGGATTGGCGGCGGCGGTGGTGGCCGGAGATCGGCCGGGTCGAGGGGCGCGCCGCAGCGGGCGGAATGCCTGGGGGCGGGGAGCGGCGACGCGTCGGCGAGCTGCTCCGGGGATGATAGTAGCAATGGCACTGGCAAGAGGGATGGAAGCAGAAGGGTAAGGATGCGGCGGTACAGATCGGAGCTCGAGCAAGAAGTAAAGAAACTGCAGAGGCAACTGGAAGAAGAGATTGACTTGCAGTTGGCATTAACAGATGCCATCACAAATAATGCTACACTGATACTTGAGCCCTCTGCAAAGCTTCCAAACAAGGCACAGGAGCTAATAATTAGCATAGCCTCCTTGGAGAATACTGTCTCAAAACTTGAAAAAGACCTAAATGACTTATGTTACCAACTGTGTCATTTAAGGAACAATACGCGACTTGCAGAAAATAATTCCAGATACTTAGAAACTCTAGCTGAAGAAAATAATTCCAGAGGTCTACTGTCTACATCATTACAGTACCAACCACCGTCAACTTGTAAATGTACAGGGGAGGAAGACATTTCAACACTAAGAGATATAAAGCTCGGAGAATCTGAATCAATGCAAGAAAATTTATTCCCTGGGCTTGAGGACCAACAGAACATTCAAAAAGAGAGTGAAGGGAGAGAGATAGTATCTCAAGATGGGCTTCTCGAAGAGCATCAAGATGTTCCTTCAAATAGATTGTTGGAAAAACACTGGAACGAAGAGATGCAAGAGTCCTATCCTATGGAAAATGGAGGCAGAGAATATCAGATAATAGATGCGTTATCATTTGACCAATCTCATCAGAGGAAAAGCAGCATCAATGGTAATGTGTGGAATGGCAATCCAAATAAGCTCTCTGAAGAAATGGTGCGCTGTATGAGAGATATCTTCCTTCGTTTATCTGACTCATCATCCGAGATATCACCAAAAGGGTCTTCTGTTAATTCAATTTCATCAACAGAACGTCTATCTGGCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGATGCAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGATGAAGTTAGATACTTCGATCCCTACAACGTTAATGGCAAGGAAGTTCGAAGAGACATTGGGAACTATTGTTCAGTAGCTGAGGTGTCTTGGATGTATGTTGGCAAGGAACAGCTTGCATATGCATCTGAAGCTCTAAAAAATTTCAGGAATCTCGTGGAGCAACTATCAAAGGTTGACCCTACATGTATGACCTGTGCTGAGCGGTTAGCATTTTGGATTAACCTGTACAATACGTTGATAATGCATGCATATTTGGCCTATGGGGTTCCAGAAAACGATATCAAGCTCTTCTCACTAATGCAAAAGGCCTGTTACATTGTTGGTGGGCAGTCCTTCAGCGCAGCAGAAATAGAGTTTGTGATTCTGAAGATGAAGACTCCAGTACACCGGCCACAACTTTCGTTGATGTTGGCCCTTCACAAGTTCAGAGTTACCGAGGAGCACAAGAAATATTCGATCGATGATGCAGAGCCCCTTGTGTTGTTTGGCCTTAGCTGTGGAATGTTCTCATCACCTGCTGTCAGGATTTTCTCAGCCGGGAATGTTCGGCAGGAGCTTCAGGAATCAATGAGAGACTACATCCGAGCATCGGTTGGTATCAACGACAGCGGGAAGCTCATCGTCCCAAAGCTGCTTCAGAGCTATGCCAAGGGCACCGTGGAGGACTCTCTGCTCGCCGACTGGATCTGCCGTCACCTCACACCAAACCAGGTCGCAGCTGTCCAAGACACTTCGTCGTCGCGGAAACAGCGGCTTCTTGGTGTGCGCAGCTTCAGCGTCGTTCCATTTGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAACAGTAGCTCCCAGCACTGAACCAAGCTTGCCCTGCCAATTGTTCAGAAAGAAACCAAGAGTAGCATTTTGACAAACTGAAAAAGAAAATGAAGAGATCAGCTGTACATGTTGTAAATCTTTTAGGGTGATTCTTTTTTTTTTTTGGGCTTGTAAAGATCGTTTGTAAGCCATGCATGCTTATATAAAAACTGTAGTATAAAGGTTTGTGTATAATTTGCTTGTTTTTAGCAACAATCAAGATGGTAAAATTCAGACAG]
[+] EMBL AK067440 [GACGCATTGGCCGCCGCTGCAGCCGTGGCCGTGGCGTCCGACAAGATGCGCTCCGTGACCCTGGGCGGTTCGATCCAGAGGGTGATGCGGAGGATTGGCGGCGGCGGTGGTGGCCGGAGATCGGCCGGGTCGAGGGGCGCGCCGCAGCGGGCGGAATGCCTGGGGGCGGGGAGCGGCGACGCGTCGGCGAGCTGCTCCGGGGATGATAGTAGCAATGGCACTGGCAAGAGGGATGGAAGCAGAAGGGTAAGGATGCGGCGGTACAGATCGGAGCTCGAGCAAGAAGTAAAGAAACTGCAGAGGCAACTGGAAGAAGAGATTGACTTGCAGTTGGCATTAACAGATGCCATCACAAATAATGCTACACTGATACTTGAGCCCTCTGCAAAGCTTCCAAACAAGGCACAGGAGCTAATAATTAGCATAGCCTCCTTGGAGAATACTGTCTCAAAACTTGAAAAAGACCTAAATGACTTATGTTACCAACTGTGTCATTTAAGGAACAATACGCGACTTGCAGAAAATAATTCCAGATACTTAGAAACTCTAGCTGAAGAAAATAATTCCAGAGGTCTACTGTCTACATCATTACAGTACCAACCACCGTCAACTTGTAAATGTACAGGGGAGGAAGACATTTCAACACTAAGAGATATAAAGCTCGGAGAATCTGAATCAATGCAAGAAAATTTATTCCCTGGGCTTGAGGACCAACAGAACATTCAAAAAGAGAGTGAAGGGAGAGAGATAGTATCTCAAGATGGGCTTCTCGAAGAGCATCAAGATGTTCCTTCAAATAGATTGTTGGAAAAACACTGGAACGAAGAGATGCAAGAGTCCTATCCTATGGAAAATGGAGGCAGAGAATATCAGATAATAGATGCGTTATCATTTGACCAATCTCATCAGAGGAAAAGCAGCATCAATGGTAATGTGTGGAATGGCAATCCAAATAAGCTCTCTGAAGAAATGGTGCGCTGTATGAGAGATATCTTCCTTCGTTTATCTGACTCATCATCCGAGATATCACCAAAAGGGTCTTCTGTTAATTCAATTTCATCAACAGAACGTCTATCTGGCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGATGCAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGATGAAGTTAGATACTTCGATCCCTACAACGTTAATGGCAAGGAAGTTCGAAGAGACATTGGGAACTATTGTTCAGTAGCTGAGGTGTCTTGGATGTATGTTGGCAAGGAACAGCTTGCATATGCATCTGAAGCTCTAAAAAATTTCAGGAATCTCGTGGAGCAACTATCAAAGGTTGACCCTACATGTATGACCTGTGCTGAGCGGTTAGCATTTTGGATTAACCTGTACAATACGTTGATAATGCATGCATATTTGGCCTATGGGGTTCCAGAAAACGATATCAAGCTCTTCTCACTAATGCAAAAGGCCTGTTACATTGTTGGTGGGCAGTCCTTCAGCGCAGCAGAAATAGAGTTTGTGATTCTGAAGATGAAGACTCCAGTACACCGGCCACAACTTTCGTTGATGTTGGCCCTTCACAAGTTCAGAGTTACCGAGGAGCACAAGAAATATTCGATCGATGATGCAGAGCCCCTTGTGTTGTTTGGCCTTAGCTGTGGAATGTTCTCATCACCTGCTGTCAGGATTTTCTCAGCCGGGAATGTTCGGCAGGAGCTTCAGGAATCAATGAGAGACTACATCCGAGCATCGGTTGGTATCAACGACAGCGGGAAGCTCATCGTCCCAAAGCTGCTTCAGAGCTATGCCAAGGGCACCGTGGAGGACTCTCTGCTCGCCGACTGGATCTGCCGTCACCTCACACCAAACCAGGTCGCAGCTGTCCAAGACACTTCGTCGTCGCGGAAACAGCGGCTTCTTGGTGTGCGCAGCTTCAGCGTCGTTCCATTTGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAACAGTAGCTCCCAGCACTGAACCAAGCTTGCCCTGCCAATTGTTCAGAAAGAAACCAAGAGTAGCATTTTGACAAACTGAAAAAGAAAATGAAGAGATCAGCTGTACATGTTGTAAATCTTTTAGGGTGATTCTTTTTTTTTTTTGGGCTTGTAAAGATCGTTTGTAAGCCATGCATGCTTATATAAAAACTGTAGTATAAAGGTTTGTGTATAATTTGCTTGTTTTTAGCAACAATCAAGATGGTAAAATTCAGACAG]
consensusID : consensus_3568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence
[TTTAATTTTATCAACAGAACGTCTATCTTTCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGAAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGAATCAACTGAAGGCTATCTCGATCGACTGATCGCATCAAGGATGAATATGATCGA]
[+] EMBL D42195 [TTTAATTTTATCAACAGAACGTCTATCTTTCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGAAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGAATCAACTGAAGGCTATCTCGATCGACTGATCGCATCAAGGATGAATATGATCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3568#0 GACGCATTGGCCGCCGCTGCAGCCGTGGCCGTGGCGTCCGACAAGATGCGCTCCGTGACC 60
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 CTGGGCGGTTCGATCCAGAGGGTGATGCGGAGGATTGGCGGCGGCGGTGGTGGCCGGAGA 120
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TCGGCCGGGTCGAGGGGCGCGCCGCAGCGGGCGGAATGCCTGGGGGCGGGGAGCGGCGAC 180
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 GCGTCGGCGAGCTGCTCCGGGGATGATAGTAGCAATGGCACTGGCAAGAGGGATGGAAGC 240
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AGAAGGGTAAGGATGCGGCGGTACAGATCGGAGCTCGAGCAAGAAGTAAAGAAACTGCAG 300
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AGGCAACTGGAAGAAGAGATTGACTTGCAGTTGGCATTAACAGATGCCATCACAAATAAT 360
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 GCTACACTGATACTTGAGCCCTCTGCAAAGCTTCCAAACAAGGCACAGGAGCTAATAATT 420
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AGCATAGCCTCCTTGGAGAATACTGTCTCAAAACTTGAAAAAGACCTAAATGACTTATGT 480
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TACCAACTGTGTCATTTAAGGAACAATACGCGACTTGCAGAAAATAATTCCAGATACTTA 540
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 GAAACTCTAGCTGAAGAAAATAATTCCAGAGGTCTACTGTCTACATCATTACAGTACCAA 600
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 CCACCGTCAACTTGTAAATGTACAGGGGAGGAAGACATTTCAACACTAAGAGATATAAAG 660
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 CTCGGAGAATCTGAATCAATGCAAGAAAATTTATTCCCTGGGCTTGAGGACCAACAGAAC 720
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 ATTCAAAAAGAGAGTGAAGGGAGAGAGATAGTATCTCAAGATGGGCTTCTCGAAGAGCAT 780
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 CAAGATGTTCCTTCAAATAGATTGTTGGAAAAACACTGGAACGAAGAGATGCAAGAGTCC 840
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TATCCTATGGAAAATGGAGGCAGAGAATATCAGATAATAGATGCGTTATCATTTGACCAA 900
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TCTCATCAGAGGAAAAGCAGCATCAATGGTAATGTGTGGAATGGCAATCCAAATAAGCTC 960
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TCTGAAGAAATGGTGCGCTGTATGAGAGATATCTTCCTTCGTTTATCTGACTCATCATCC 1020
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 GAGATATCACCAAAAGGGTCTTCTGTTAATTCAATTTCATCAACAGAACGTCTATCTGGC 1080
consensus_3568#1 -----------------------------TTTAATTTTATCAACAGAACGTCTATCTTTC 31
** ***** ******************* *
consensus_3568#0 TGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGATGCAAAGCCCTTCA 1140
consensus_3568#1 TGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGA---AAAGCCCTTCA 88
********************************************** ***********
consensus_3568#0 GTTGATTCAAACCATGACAGTATTGATGAAGTTAGA---TACTTCGATC--CCTACAACG 1195
consensus_3568#1 GTTGATTCAAACCATGACAGTATTGAATCAACTGAAGGCTATCTCGATCGACTGATCGCA 148
************************** * * * ** ****** * * *
consensus_3568#0 TTAATGGCAAGGAAGTTCGAAGAGACATTGGGAACTATTGTTCAGTAGCTGAGGTGTCTT 1255
consensus_3568#1 TCAAGGATGAATATGATCGA---------------------------------------- 168
* ** * * * * ****
consensus_3568#0 GGATGTATGTTGGCAAGGAACAGCTTGCATATGCATCTGAAGCTCTAAAAAATTTCAGGA 1315
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 ATCTCGTGGAGCAACTATCAAAGGTTGACCCTACATGTATGACCTGTGCTGAGCGGTTAG 1375
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 CATTTTGGATTAACCTGTACAATACGTTGATAATGCATGCATATTTGGCCTATGGGGTTC 1435
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 CAGAAAACGATATCAAGCTCTTCTCACTAATGCAAAAGGCCTGTTACATTGTTGGTGGGC 1495
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AGTCCTTCAGCGCAGCAGAAATAGAGTTTGTGATTCTGAAGATGAAGACTCCAGTACACC 1555
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 GGCCACAACTTTCGTTGATGTTGGCCCTTCACAAGTTCAGAGTTACCGAGGAGCACAAGA 1615
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AATATTCGATCGATGATGCAGAGCCCCTTGTGTTGTTTGGCCTTAGCTGTGGAATGTTCT 1675
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 CATCACCTGCTGTCAGGATTTTCTCAGCCGGGAATGTTCGGCAGGAGCTTCAGGAATCAA 1735
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TGAGAGACTACATCCGAGCATCGGTTGGTATCAACGACAGCGGGAAGCTCATCGTCCCAA 1795
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AGCTGCTTCAGAGCTATGCCAAGGGCACCGTGGAGGACTCTCTGCTCGCCGACTGGATCT 1855
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 GCCGTCACCTCACACCAAACCAGGTCGCAGCTGTCCAAGACACTTCGTCGTCGCGGAAAC 1915
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AGCGGCTTCTTGGTGTGCGCAGCTTCAGCGTCGTTCCATTTGACTCAAAATTCCGGTATC 1975
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TGTTCTTGCCTGACAACAGTAGCTCCCAGCACTGAACCAAGCTTGCCCTGCCAATTGTTC 2035
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 AGAAAGAAACCAAGAGTAGCATTTTGACAAACTGAAAAAGAAAATGAAGAGATCAGCTGT 2095
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 ACATGTTGTAAATCTTTTAGGGTGATTCTTTTTTTTTTTTGGGCTTGTAAAGATCGTTTG 2155
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TAAGCCATGCATGCTTATATAAAAACTGTAGTATAAAGGTTTGTGTATAATTTGCTTGTT 2215
consensus_3568#1 ------------------------------------------------------------
consensus_3568#0 TTTAGCAACAATCAAGATGGTAAAATTCAGACAG 2249
consensus_3568#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||