These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2249 fasta sequence [GACGCATTGGCCGCCGCTGCAGCCGTGGCCGTGGCGTCCGACAAGATGCGCTCCGTGACCCTGGGCGGTTCGATCCAGAGGGTGATGCGGAGGATTGGCGGCGGCGGTGGTGGCCGGAGATCGGCCGGGTCGAGGGGCGCGCCGCAGCGGGCGGAATGCCTGGGGGCGGGGAGCGGCGACGCGTCGGCGAGCTGCTCCGGGGATGATAGTAGCAATGGCACTGGCAAGAGGGATGGAAGCAGAAGGGTAAGGATGCGGCGGTACAGATCGGAGCTCGAGCAAGAAGTAAAGAAACTGCAGAGGCAACTGGAAGAAGAGATTGACTTGCAGTTGGCATTAACAGATGCCATCACAAATAATGCTACACTGATACTTGAGCCCTCTGCAAAGCTTCCAAACAAGGCACAGGAGCTAATAATTAGCATAGCCTCCTTGGAGAATACTGTCTCAAAACTTGAAAAAGACCTAAATGACTTATGTTACCAACTGTGTCATTTAAGGAACAATACGCGACTTGCAGAAAATAATTCCAGATACTTAGAAACTCTAGCTGAAGAAAATAATTCCAGAGGTCTACTGTCTACATCATTACAGTACCAACCACCGTCAACTTGTAAATGTACAGGGGAGGAAGACATTTCAACACTAAGAGATATAAAGCTCGGAGAATCTGAATCAATGCAAGAAAATTTATTCCCTGGGCTTGAGGACCAACAGAACATTCAAAAAGAGAGTGAAGGGAGAGAGATAGTATCTCAAGATGGGCTTCTCGAAGAGCATCAAGATGTTCCTTCAAATAGATTGTTGGAAAAACACTGGAACGAAGAGATGCAAGAGTCCTATCCTATGGAAAATGGAGGCAGAGAATATCAGATAATAGATGCGTTATCATTTGACCAATCTCATCAGAGGAAAAGCAGCATCAATGGTAATGTGTGGAATGGCAATCCAAATAAGCTCTCTGAAGAAATGGTGCGCTGTATGAGAGATATCTTCCTTCGTTTATCTGACTCATCATCCGAGATATCACCAAAAGGGTCTTCTGTTAATTCAATTTCATCAACAGAACGTCTATCTGGCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGATGCAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGATGAAGTTAGATACTTCGATCCCTACAACGTTAATGGCAAGGAAGTTCGAAGAGACATTGGGAACTATTGTTCAGTAGCTGAGGTGTCTTGGATGTATGTTGGCAAGGAACAGCTTGCATATGCATCTGAAGCTCTAAAAAATTTCAGGAATCTCGTGGAGCAACTATCAAAGGTTGACCCTACATGTATGACCTGTGCTGAGCGGTTAGCATTTTGGATTAACCTGTACAATACGTTGATAATGCATGCATATTTGGCCTATGGGGTTCCAGAAAACGATATCAAGCTCTTCTCACTAATGCAAAAGGCCTGTTACATTGTTGGTGGGCAGTCCTTCAGCGCAGCAGAAATAGAGTTTGTGATTCTGAAGATGAAGACTCCAGTACACCGGCCACAACTTTCGTTGATGTTGGCCCTTCACAAGTTCAGAGTTACCGAGGAGCACAAGAAATATTCGATCGATGATGCAGAGCCCCTTGTGTTGTTTGGCCTTAGCTGTGGAATGTTCTCATCACCTGCTGTCAGGATTTTCTCAGCCGGGAATGTTCGGCAGGAGCTTCAGGAATCAATGAGAGACTACATCCGAGCATCGGTTGGTATCAACGACAGCGGGAAGCTCATCGTCCCAAAGCTGCTTCAGAGCTATGCCAAGGGCACCGTGGAGGACTCTCTGCTCGCCGACTGGATCTGCCGTCACCTCACACCAAACCAGGTCGCAGCTGTCCAAGACACTTCGTCGTCGCGGAAACAGCGGCTTCTTGGTGTGCGCAGCTTCAGCGTCGTTCCATTTGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAACAGTAGCTCCCAGCACTGAACCAAGCTTGCCCTGCCAATTGTTCAGAAAGAAACCAAGAGTAGCATTTTGACAAACTGAAAAAGAAAATGAAGAGATCAGCTGTACATGTTGTAAATCTTTTAGGGTGATTCTTTTTTTTTTTTGGGCTTGTAAAGATCGTTTGTAAGCCATGCATGCTTATATAAAAACTGTAGTATAAAGGTTTGTGTATAATTTGCTTGTTTTTAGCAACAATCAAGATGGTAAAATTCAGACAG] [+] EMBL AK067440 [GACGCATTGGCCGCCGCTGCAGCCGTGGCCGTGGCGTCCGACAAGATGCGCTCCGTGACCCTGGGCGGTTCGATCCAGAGGGTGATGCGGAGGATTGGCGGCGGCGGTGGTGGCCGGAGATCGGCCGGGTCGAGGGGCGCGCCGCAGCGGGCGGAATGCCTGGGGGCGGGGAGCGGCGACGCGTCGGCGAGCTGCTCCGGGGATGATAGTAGCAATGGCACTGGCAAGAGGGATGGAAGCAGAAGGGTAAGGATGCGGCGGTACAGATCGGAGCTCGAGCAAGAAGTAAAGAAACTGCAGAGGCAACTGGAAGAAGAGATTGACTTGCAGTTGGCATTAACAGATGCCATCACAAATAATGCTACACTGATACTTGAGCCCTCTGCAAAGCTTCCAAACAAGGCACAGGAGCTAATAATTAGCATAGCCTCCTTGGAGAATACTGTCTCAAAACTTGAAAAAGACCTAAATGACTTATGTTACCAACTGTGTCATTTAAGGAACAATACGCGACTTGCAGAAAATAATTCCAGATACTTAGAAACTCTAGCTGAAGAAAATAATTCCAGAGGTCTACTGTCTACATCATTACAGTACCAACCACCGTCAACTTGTAAATGTACAGGGGAGGAAGACATTTCAACACTAAGAGATATAAAGCTCGGAGAATCTGAATCAATGCAAGAAAATTTATTCCCTGGGCTTGAGGACCAACAGAACATTCAAAAAGAGAGTGAAGGGAGAGAGATAGTATCTCAAGATGGGCTTCTCGAAGAGCATCAAGATGTTCCTTCAAATAGATTGTTGGAAAAACACTGGAACGAAGAGATGCAAGAGTCCTATCCTATGGAAAATGGAGGCAGAGAATATCAGATAATAGATGCGTTATCATTTGACCAATCTCATCAGAGGAAAAGCAGCATCAATGGTAATGTGTGGAATGGCAATCCAAATAAGCTCTCTGAAGAAATGGTGCGCTGTATGAGAGATATCTTCCTTCGTTTATCTGACTCATCATCCGAGATATCACCAAAAGGGTCTTCTGTTAATTCAATTTCATCAACAGAACGTCTATCTGGCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGATGCAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGATGAAGTTAGATACTTCGATCCCTACAACGTTAATGGCAAGGAAGTTCGAAGAGACATTGGGAACTATTGTTCAGTAGCTGAGGTGTCTTGGATGTATGTTGGCAAGGAACAGCTTGCATATGCATCTGAAGCTCTAAAAAATTTCAGGAATCTCGTGGAGCAACTATCAAAGGTTGACCCTACATGTATGACCTGTGCTGAGCGGTTAGCATTTTGGATTAACCTGTACAATACGTTGATAATGCATGCATATTTGGCCTATGGGGTTCCAGAAAACGATATCAAGCTCTTCTCACTAATGCAAAAGGCCTGTTACATTGTTGGTGGGCAGTCCTTCAGCGCAGCAGAAATAGAGTTTGTGATTCTGAAGATGAAGACTCCAGTACACCGGCCACAACTTTCGTTGATGTTGGCCCTTCACAAGTTCAGAGTTACCGAGGAGCACAAGAAATATTCGATCGATGATGCAGAGCCCCTTGTGTTGTTTGGCCTTAGCTGTGGAATGTTCTCATCACCTGCTGTCAGGATTTTCTCAGCCGGGAATGTTCGGCAGGAGCTTCAGGAATCAATGAGAGACTACATCCGAGCATCGGTTGGTATCAACGACAGCGGGAAGCTCATCGTCCCAAAGCTGCTTCAGAGCTATGCCAAGGGCACCGTGGAGGACTCTCTGCTCGCCGACTGGATCTGCCGTCACCTCACACCAAACCAGGTCGCAGCTGTCCAAGACACTTCGTCGTCGCGGAAACAGCGGCTTCTTGGTGTGCGCAGCTTCAGCGTCGTTCCATTTGACTCAAAATTCCGGTATCTGTTCTTGCCTGACAACAGTAGCTCCCAGCACTGAACCAAGCTTGCCCTGCCAATTGTTCAGAAAGAAACCAAGAGTAGCATTTTGACAAACTGAAAAAGAAAATGAAGAGATCAGCTGTACATGTTGTAAATCTTTTAGGGTGATTCTTTTTTTTTTTTGGGCTTGTAAAGATCGTTTGTAAGCCATGCATGCTTATATAAAAACTGTAGTATAAAGGTTTGTGTATAATTTGCTTGTTTTTAGCAACAATCAAGATGGTAAAATTCAGACAG] consensusID : consensus_3568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [TTTAATTTTATCAACAGAACGTCTATCTTTCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGAAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGAATCAACTGAAGGCTATCTCGATCGACTGATCGCATCAAGGATGAATATGATCGA] [+] EMBL D42195 [TTTAATTTTATCAACAGAACGTCTATCTTTCTGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGAAAAGCCCTTCAGTTGATTCAAACCATGACAGTATTGAATCAACTGAAGGCTATCTCGATCGACTGATCGCATCAAGGATGAATATGATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3568#0 GACGCATTGGCCGCCGCTGCAGCCGTGGCCGTGGCGTCCGACAAGATGCGCTCCGTGACC 60 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CTGGGCGGTTCGATCCAGAGGGTGATGCGGAGGATTGGCGGCGGCGGTGGTGGCCGGAGA 120 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TCGGCCGGGTCGAGGGGCGCGCCGCAGCGGGCGGAATGCCTGGGGGCGGGGAGCGGCGAC 180 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GCGTCGGCGAGCTGCTCCGGGGATGATAGTAGCAATGGCACTGGCAAGAGGGATGGAAGC 240 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AGAAGGGTAAGGATGCGGCGGTACAGATCGGAGCTCGAGCAAGAAGTAAAGAAACTGCAG 300 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AGGCAACTGGAAGAAGAGATTGACTTGCAGTTGGCATTAACAGATGCCATCACAAATAAT 360 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GCTACACTGATACTTGAGCCCTCTGCAAAGCTTCCAAACAAGGCACAGGAGCTAATAATT 420 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AGCATAGCCTCCTTGGAGAATACTGTCTCAAAACTTGAAAAAGACCTAAATGACTTATGT 480 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TACCAACTGTGTCATTTAAGGAACAATACGCGACTTGCAGAAAATAATTCCAGATACTTA 540 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GAAACTCTAGCTGAAGAAAATAATTCCAGAGGTCTACTGTCTACATCATTACAGTACCAA 600 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CCACCGTCAACTTGTAAATGTACAGGGGAGGAAGACATTTCAACACTAAGAGATATAAAG 660 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CTCGGAGAATCTGAATCAATGCAAGAAAATTTATTCCCTGGGCTTGAGGACCAACAGAAC 720 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 ATTCAAAAAGAGAGTGAAGGGAGAGAGATAGTATCTCAAGATGGGCTTCTCGAAGAGCAT 780 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CAAGATGTTCCTTCAAATAGATTGTTGGAAAAACACTGGAACGAAGAGATGCAAGAGTCC 840 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TATCCTATGGAAAATGGAGGCAGAGAATATCAGATAATAGATGCGTTATCATTTGACCAA 900 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TCTCATCAGAGGAAAAGCAGCATCAATGGTAATGTGTGGAATGGCAATCCAAATAAGCTC 960 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TCTGAAGAAATGGTGCGCTGTATGAGAGATATCTTCCTTCGTTTATCTGACTCATCATCC 1020 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GAGATATCACCAAAAGGGTCTTCTGTTAATTCAATTTCATCAACAGAACGTCTATCTGGC 1080 consensus_3568#1 -----------------------------TTTAATTTTATCAACAGAACGTCTATCTTTC 31 ** ***** ******************* * consensus_3568#0 TGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGATGCAAAGCCCTTCA 1140 consensus_3568#1 TGTACATTGACATCTGTATCAGATTCATCCTTGATGGCATCAGTGA---AAAGCCCTTCA 88 ********************************************** *********** consensus_3568#0 GTTGATTCAAACCATGACAGTATTGATGAAGTTAGA---TACTTCGATC--CCTACAACG 1195 consensus_3568#1 GTTGATTCAAACCATGACAGTATTGAATCAACTGAAGGCTATCTCGATCGACTGATCGCA 148 ************************** * * * ** ****** * * * consensus_3568#0 TTAATGGCAAGGAAGTTCGAAGAGACATTGGGAACTATTGTTCAGTAGCTGAGGTGTCTT 1255 consensus_3568#1 TCAAGGATGAATATGATCGA---------------------------------------- 168 * ** * * * * **** consensus_3568#0 GGATGTATGTTGGCAAGGAACAGCTTGCATATGCATCTGAAGCTCTAAAAAATTTCAGGA 1315 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 ATCTCGTGGAGCAACTATCAAAGGTTGACCCTACATGTATGACCTGTGCTGAGCGGTTAG 1375 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CATTTTGGATTAACCTGTACAATACGTTGATAATGCATGCATATTTGGCCTATGGGGTTC 1435 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CAGAAAACGATATCAAGCTCTTCTCACTAATGCAAAAGGCCTGTTACATTGTTGGTGGGC 1495 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AGTCCTTCAGCGCAGCAGAAATAGAGTTTGTGATTCTGAAGATGAAGACTCCAGTACACC 1555 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GGCCACAACTTTCGTTGATGTTGGCCCTTCACAAGTTCAGAGTTACCGAGGAGCACAAGA 1615 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AATATTCGATCGATGATGCAGAGCCCCTTGTGTTGTTTGGCCTTAGCTGTGGAATGTTCT 1675 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CATCACCTGCTGTCAGGATTTTCTCAGCCGGGAATGTTCGGCAGGAGCTTCAGGAATCAA 1735 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TGAGAGACTACATCCGAGCATCGGTTGGTATCAACGACAGCGGGAAGCTCATCGTCCCAA 1795 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AGCTGCTTCAGAGCTATGCCAAGGGCACCGTGGAGGACTCTCTGCTCGCCGACTGGATCT 1855 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GCCGTCACCTCACACCAAACCAGGTCGCAGCTGTCCAAGACACTTCGTCGTCGCGGAAAC 1915 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AGCGGCTTCTTGGTGTGCGCAGCTTCAGCGTCGTTCCATTTGACTCAAAATTCCGGTATC 1975 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TGTTCTTGCCTGACAACAGTAGCTCCCAGCACTGAACCAAGCTTGCCCTGCCAATTGTTC 2035 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AGAAAGAAACCAAGAGTAGCATTTTGACAAACTGAAAAAGAAAATGAAGAGATCAGCTGT 2095 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 ACATGTTGTAAATCTTTTAGGGTGATTCTTTTTTTTTTTTGGGCTTGTAAAGATCGTTTG 2155 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TAAGCCATGCATGCTTATATAAAAACTGTAGTATAAAGGTTTGTGTATAATTTGCTTGTT 2215 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 TTTAGCAACAATCAAGATGGTAAAATTCAGACAG 2249 consensus_3568#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||