cluster # 3570

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Oryza sativa
cluster # 3570 cluster # 3570 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3570#0 length = 673 sequences # 1

consensus_3570#1 length = 424 sequences # 1

consensusID : consensus_3570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CGCCCTTTGAGGGAGATGGACGAGGCGGCGGTGGAGAAGGTGAAGGAGATGAATAGGCTTCTCGTCAGGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCGGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCGACGAGGAACGCGCGGTGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCAGCGGCGACGCGCGCGCGCCTCGACGCCGCGCGAGAGTCGCTCGAGGCCGCGGAGGCTGCGGCGGCGCGCGAGGCGGCGGGCCGGGGCGAGGCCGCGGCGCGGCTGGAGGCGGCGGCGGCGGAGAACGGCCGCGCCATGGAGCTCCTCGCGACGAAGGAGGCCGAGCTGGCCGCCATCTCCGCCAATCTCGCTGAATCGGACGCCATGGTGGCCCAACTGGAGGAGCAGAACTCGCAGCTCCGTGCAGAGAGGGGCGAATTGGAGAAGCGACTGGAGGAGACGAAGGCGTCGTCTCGCCGCGTTCACACTCAGAAGACGGAGGTGGAAGAAAGCTTCGAGGAGTTCAAGAAGAACACCGAGAAGCACAAGCAGCAGATGGAGGAGAAGCTTGGGGAAAAAATGGCGGAACTGAAGCTTTTGACCTCCATTAAGACAGAAATGGCGGCGAAGATTGAGT]

[+] EMBL CB621139             [CGCCCTTTGAGGGAGATGGACGAGGCGGCGGTGGAGAAGGTGAAGGAGATGAATAGGCTTCTCGTCAGGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCGGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCGACGAGGAACGCGCGGTGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCAGCGGCGACGCGCGCGCGCCTCGACGCCGCGCGAGAGTCGCTCGAGGCCGCGGAGGCTGCGGCGGCGCGCGAGGCGGCGGGCCGGGGCGAGGCCGCGGCGCGGCTGGAGGCGGCGGCGGCGGAGAACGGCCGCGCCATGGAGCTCCTCGCGACGAAGGAGGCCGAGCTGGCCGCCATCTCCGCCAATCTCGCTGAATCGGACGCCATGGTGGCCCAACTGGAGGAGCAGAACTCGCAGCTCCGTGCAGAGAGGGGCGAATTGGAGAAGCGACTGGAGGAGACGAAGGCGTCGTCTCGCCGCGTTCACACTCAGAAGACGGAGGTGGAAGAAAGCTTCGAGGAGTTCAAGAAGAACACCGAGAAGCACAAGCAGCAGATGGAGGAGAAGCTTGGGGAAAAAATGGCGGAACTGAAGCTTTTGACCTCCATTAAGACAGAAATGGCGGCGAAGATTGAGT]




>consensus_3570#0
CGCCCTTTGAGGGAGATGGACGAGGCGGCGGTGGAGAAGGTGAAGGAGATGAATAGGCTT
CTCGTCAGGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCGGC
GAGCTGGAGGCGGACGCCGGCGCGGTCGCCGACGAGGAACGCGCGGTGCTCCGGGTGGCC
CTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCAGCGGCGACGCGCGCGCGCCTCGAC
GCCGCGCGAGAGTCGCTCGAGGCCGCGGAGGCTGCGGCGGCGCGCGAGGCGGCGGGCCGG
GGCGAGGCCGCGGCGCGGCTGGAGGCGGCGGCGGCGGAGAACGGCCGCGCCATGGAGCTC
CTCGCGACGAAGGAGGCCGAGCTGGCCGCCATCTCCGCCAATCTCGCTGAATCGGACGCC
ATGGTGGCCCAACTGGAGGAGCAGAACTCGCAGCTCCGTGCAGAGAGGGGCGAATTGGAG
AAGCGACTGGAGGAGACGAAGGCGTCGTCTCGCCGCGTTCACACTCAGAAGACGGAGGTG
GAAGAAAGCTTCGAGGAGTTCAAGAAGAACACCGAGAAGCACAAGCAGCAGATGGAGGAG
AAGCTTGGGGAAAAAATGGCGGAACTGAAGCTTTTGACCTCCATTAAGACAGAAATGGCG
GCGAAGATTGAGT

consensusID : consensus_3570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [GGCCGCCGTCGACGAGGAGCCCACGGCGAGGTTCTACTTCTTCCGCCGCCGCCGCGGAGGCTGATGGTGGGGATGCCACGGTGATTAATCGTTCGGTGGAGGGAGACGACGGCGGAGAGGAAGCGGTCGCGGTGGAGGAGGAGAGGCGGGAGTCGTCGTCGCCGGAGATGGACGAGGCGGCGGCGGATAAGGTGAAGGAGATGAATACGCTTCTCTTCACGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCTGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCTACGAGGAACGCACGGCGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCCGCGGCGACGCGCGCGCGCCTCGACTCCGCGCGAGAGTCGCTCTAGGCCGCGGAGGC]

[+] EMBL CB679176             [GGCCGCCGTCGACGAGGAGCCCACGGCGAGGTTCTACTTCTTCCGCCGCCGCCGCGGAGGCTGATGGTGGGGATGCCACGGTGATTAATCGTTCGGTGGAGGGAGACGACGGCGGAGAGGAAGCGGTCGCGGTGGAGGAGGAGAGGCGGGAGTCGTCGTCGCCGGAGATGGACGAGGCGGCGGCGGATAAGGTGAAGGAGATGAATACGCTTCTCTTCACGGAGTCCGTCGAGGAGCGGGCGCGCGTTGCCGCGCTCGCCGCGGGCATCTGCGAGCTGGAGGCGGACGCCGGCGCGGTCGCCTACGAGGAACGCACGGCGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCGATGAGGCCGCGGCGACGCGCGCGCGCCTCGACTCCGCGCGAGAGTCGCTCTAGGCCGCGGAGGC]




>consensus_3570#1
GGCCGCCGTCGACGAGGAGCCCACGGCGAGGTTCTACTTCTTCCGCCGCCGCCGCGGAGG
CTGATGGTGGGGATGCCACGGTGATTAATCGTTCGGTGGAGGGAGACGACGGCGGAGAGG
AAGCGGTCGCGGTGGAGGAGGAGAGGCGGGAGTCGTCGTCGCCGGAGATGGACGAGGCGG
CGGCGGATAAGGTGAAGGAGATGAATACGCTTCTCTTCACGGAGTCCGTCGAGGAGCGGG
CGCGCGTTGCCGCGCTCGCCGCGGGCATCTGCGAGCTGGAGGCGGACGCCGGCGCGGTCG
CCTACGAGGAACGCACGGCGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCG
ATGAGGCCGCGGCGACGCGCGCGCGCCTCGACTCCGCGCGAGAGTCGCTCTAGGCCGCGG
AGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3570#0      ------------------------------------------------------------
consensus_3570#1      GGCCGCCGTCGACGAGGAGCCCACGGCGAGGTTCTACTTCTTCCGCCGCCGCCGCGGAGG 60
                                                                                  

consensus_3570#0      ------------------------------------------------------------
consensus_3570#1      CTGATGGTGGGGATGCCACGGTGATTAATCGTTCGGTGGAGGGAGACGACGGCGGAGAGG 120
                                                                                  

consensus_3570#0      --------------------------------CGCCCTTTGAGGGAGATGGACGAGGCGG 28
consensus_3570#1      AAGCGGTCGCGGTGGAGGAGGAGAGGCGGGAGTCGTCGTCGCCGGAGATGGACGAGGCGG 180
                                                          * * *  *****************

consensus_3570#0      CGGTGGAGAAGGTGAAGGAGATGAATAGGCTTCTCGTCAGGGAGTCCGTCGAGGAGCGGG 88
consensus_3570#1      CGGCGGATAAGGTGAAGGAGATGAATACGCTTCTCTTCACGGAGTCCGTCGAGGAGCGGG 240
                      *** *** ******************* ******* *** ********************

consensus_3570#0      CGCGCGTTGCCGCGCTCGCCGCGGGCATCGGCGAGCTGGAGGCGGACGCCGGCGCGGTCG 148
consensus_3570#1      CGCGCGTTGCCGCGCTCGCCGCGGGCATCTGCGAGCTGGAGGCGGACGCCGGCGCGGTCG 300
                      ***************************** ******************************

consensus_3570#0      CCGACGAGGAACGCGCGGTGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCG 208
consensus_3570#1      CCTACGAGGAACGCACGGCGCTCCGGGTGGCCCTTGCGGTGAAGCTCGCCGCCGCCTCCG 360
                      ** *********** *** *****************************************

consensus_3570#0      ATGAGGCAGCGGCGACGCGCGCGCGCCTCGACGCCGCGCGAGAGTCGCTCGAGGCCGCGG 268
consensus_3570#1      ATGAGGCCGCGGCGACGCGCGCGCGCCTCGACTCCGCGCGAGAGTCGCTCTAGGCCGCGG 420
                      ******* ************************ ***************** *********

consensus_3570#0      AGGCTGCGGCGGCGCGCGAGGCGGCGGGCCGGGGCGAGGCCGCGGCGCGGCTGGAGGCGG 328
consensus_3570#1      AGGC-------------------------------------------------------- 424
                      ****                                                        

consensus_3570#0      CGGCGGCGGAGAACGGCCGCGCCATGGAGCTCCTCGCGACGAAGGAGGCCGAGCTGGCCG 388
consensus_3570#1      ------------------------------------------------------------
                                                                                  

consensus_3570#0      CCATCTCCGCCAATCTCGCTGAATCGGACGCCATGGTGGCCCAACTGGAGGAGCAGAACT 448
consensus_3570#1      ------------------------------------------------------------
                                                                                  

consensus_3570#0      CGCAGCTCCGTGCAGAGAGGGGCGAATTGGAGAAGCGACTGGAGGAGACGAAGGCGTCGT 508
consensus_3570#1      ------------------------------------------------------------
                                                                                  

consensus_3570#0      CTCGCCGCGTTCACACTCAGAAGACGGAGGTGGAAGAAAGCTTCGAGGAGTTCAAGAAGA 568
consensus_3570#1      ------------------------------------------------------------
                                                                                  

consensus_3570#0      ACACCGAGAAGCACAAGCAGCAGATGGAGGAGAAGCTTGGGGAAAAAATGGCGGAACTGA 628
consensus_3570#1      ------------------------------------------------------------
                                                                                  

consensus_3570#0      AGCTTTTGACCTCCATTAAGACAGAAATGGCGGCGAAGATTGAGT 673
consensus_3570#1      ---------------------------------------------