These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1035 fasta sequence [GACCGATCCCCAATTCGCCGCGCGCGCGCACGGCGGCGGCGGCGAGCCGGCGACCTCCCCCTCCGCCGCCATGGACGGCCGCCGCAACGGCGAGCACCAGCCGACCCGGTGGCCGCCGGGTGCGGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCCCGCCTCCATCCTCCTCTTCGCCCTCATCGGCGCCACCGCCACCACCGCCGCGTTTGGTCAGCTGCGCAGGACGATGAGCTGGTTCTACACGCAGCTTAGTAGGTCGGAGCCTTATGTGTACTGGGAAGACATACCACGTCGACCGAATCGGCGTGGTGAAGCCTGGGGCCAGTATTACCAGAGGATGCGCGAGAAGAGTGAGGATCAGAGGGAGAGAGTGGAACGCATAAGGCACATGCAAGATATGTTCAAGAAGGAGAGAAGTGAATGTCGGGATTACCGAACTCGGGATGGCCATAATCCAAGCTACTATCAGAATAGTCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAGAACAAATTTCAGATCGATGCCCAGGGAAGCCATGGGTTACACTATGTCACAGCACTACTCTATCTTGGGTCTTGACAGGTCAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGAGAAAAGCGATGGAGTATCATCCAGATCAAAACCAACATAACAAAGAGTTTGCTGAGGCAAAATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAATGGAAGTTTATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACATGTCTTAACCTTGATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAATAGTTATCTGTTGTGGGTGCTGAACCGCAGATTGTTGCCAAGATATCTAGCTGTCAGACCAGCTGTTGTAGGACATGCTGTCCTTGATAAAAATCCTCGTGTAGAAGTTTTGCTCTCACAAACAAAAGGCAGAATT] [+] EMBL AK068837 [GACCGATCCCCAATTCGCCGCGCGCGCGCACGGCGGCGGCGGCGAGCCGGCGACCTCCCCCTCCGCCGCCATGGACGGCCGCCGCAACGGCGAGCACCAGCCGACCCGGTGGCCGCCGGGTGCGGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCCCGCCTCCATCCTCCTCTTCGCCCTCATCGGCGCCACCGCCACCACCGCCGCGTTTGGTCAGCTGCGCAGGACGATGAGCTGGTTCTACACGCAGCTTAGTAGGTCGGAGCCTTATGTGTACTGGGAAGACATACCACGTCGACCGAATCGGCGTGGTGAAGCCTGGGGCCAGTATTACCAGAGGATGCGCGAGAAGAGTGAGGATCAGAGGGAGAGAGTGGAACGCATAAGGCACATGCAAGATATGTTCAAGAAGGAGAGAAGTGAATGTCGGGATTACCGAACTCGGGATGGCCATAATCCAAGCTACTATCAGAATAGTCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAGAACAAATTTCAGATCGATGCCCAGGGAAGCCATGGGTTACACTATGTCACAGCACTACTCTATCTTGGGTCTTGACAGGTCAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGAGAAAAGCGATGGAGTATCATCCAGATCAAAACCAACATAACAAAGAGTTTGCTGAGGCAAAATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAATGGAAGTTTATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACATGTCTTAACCTTGATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAATAGTTATCTGTTGTGGGTGCTGAACCGCAGATTGTTGCCAAGATATCTAGCTGTCAGACCAGCTGTTGTAGGACATGCTGTCCTTGATAAAAATCCTCGTGTAGAAGTTTTGCTCTCACAAACAAAAGGCAGAATT] consensusID : consensus_3584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [GCCGCAACNGCACCAGCCGACCCGGTGGCCGCCNCGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCNTCCATCCTCCTCTNNNCCCTCATCGGNCCACCGCACCACCGCCGCGTTTGGTCAGCTNCNAGGACGACGAGCTGGTTCTACACNCAGCTTAGTAGGTCGGAGCTTATGTGTACTGGGAAGACATACCACGTCGACCGATCGANNCGAANGGGGCCAGTATACAGAGAGCGCGAGAAGAGTGAGGATCAGAGGAGAGAGNANATANCCAATCGAGAAGT] [+] EMBL D42319 [GCCGCAACNGCACCAGCCGACCCGGTGGCCGCCNCGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCNTCCATCCTCCTCTNNNCCCTCATCGGNCCACCGCACCACCGCCGCGTTTGGTCAGCTNCNAGGACGACGAGCTGGTTCTACACNCAGCTTAGTAGGTCGGAGCTTATGTGTACTGGGAAGACATACCACGTCGACCGATCGANNCGAANGGGGCCAGTATACAGAGAGCGCGAGAAGAGTGAGGATCAGAGGAGAGAGNANATANCCAATCGAGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3584#0 GACCGATCCCCAATTCGCCGCGCGCGCGCACGGCGGCGGCGGCGAGCCGGCGACCTCCCC 60 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 CTCCGCCGCCATGGACGGCCGCCGCAACGGCGAGCACCAGCCGACCCGGTGGCCGCCGGG 120 consensus_3584#1 --------------------GCCGCAAC----NGCACCAGCCGACCCGGTGGCCGCCNCG 36 ******** ************************ * consensus_3584#0 TGCGGGGGTGGAGGAGAGGGACAACGCCTCCTCCTCCCCCGCCTCCATCCTCCTCTTCGC 180 consensus_3584#1 -----GGGTGGAGGAGAGGGACAACGCCTCCTCCTCC----CNTCCATCCTCCTCTNNNC 87 ******************************** * ************* * consensus_3584#0 CCTCATCGGCGCCACCGCCACCACCGCCGCGTTTGGTCAGCTGCGCAGGACGATGAGCTG 240 consensus_3584#1 CCTCATCGGN-CCACCGC-ACCACCGCCGCGTTTGGTCAGCTNCN-AGGACGACGAGCTG 144 ********* ******* *********************** * ******* ****** consensus_3584#0 GTTCTACACGCAGCTTAGTAGGTCGGAGCCTTATGTGTACTGGGAAGACATACCACGTCG 300 consensus_3584#1 GTTCTACACNCAGCTTAGTAGGTCGGAGC-TTATGTGTACTGGGAAGACATACCACGTCG 203 ********* ******************* ****************************** consensus_3584#0 ACCGAATCGGCGTGGTGAAGCCTGGGGCCAGTATTACCAGAGGATGCGCGAGAAGAGTGA 360 consensus_3584#1 ACCGAT----CGANNCGAA---NGGGGCCAGTAT----ACAGAGAGCGCGAGAAGAGTGA 252 ***** ** *** *********** * ** *************** consensus_3584#0 GGATCAGAGG-GAGAGAGTGGAACGCATAAGGCACATGCAAGATATGTTCAAGAAGGAGA 419 consensus_3584#1 GGATCAGAGGAGAGAGNANATANCCAATCGAGAAGT------------------------ 288 ********** ***** * * ** * * consensus_3584#0 GAAGTGAATGTCGGGATTACCGAACTCGGGATGGCCATAATCCAAGCTACTATCAGAATA 479 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 GTCGAAGAGAGGAGTGGTACTGGGATGCAGAGTCATTTTATGCTAACCAAAGAACAAATT 539 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 TCAGATCGATGCCCAGGGAAGCCATGGGTTACACTATGTCACAGCACTACTCTATCTTGG 599 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 GTCTTGACAGGTCAAGATTGGAGCCATTCTCAGATGCTGAAATTAAGAATGCATTTAGGA 659 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 GAAAAGCGATGGAGTATCATCCAGATCAAAACCAACATAACAAAGAGTTTGCTGAGGCAA 719 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 AATTCAAAGAGGTCATGGATTCCTATGAAGCAATAAAATTAGAAAGGCAAAATGGAAGTT 779 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 TATGAATGCGCTCACAATGGAGGGCTGTTGTATATAAGGCGTTTGACACAAGATAAAACA 839 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 TGTCTTAACCTTGATTGCTGTTTTGCTTCTTTTTTCACTATTTATGTAAGCAACAACAAA 899 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 TAGTTATCTGTTGTGGGTGCTGAACCGCAGATTGTTGCCAAGATATCTAGCTGTCAGACC 959 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 AGCTGTTGTAGGACATGCTGTCCTTGATAAAAATCCTCGTGTAGAAGTTTTGCTCTCACA 1019 consensus_3584#1 ------------------------------------------------------------ consensus_3584#0 AACAAAAGGCAGAATT 1035 consensus_3584#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||