cluster # 3586

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3586 cluster # 3586 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3586#0 length = 482 sequences # 1

consensus_3586#1 length = 254 sequences # 1

consensusID : consensus_3586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [ATGACTCGCGCCCGCGCCCGCGCCCGCGCCGTGCGGCTGGCCGTGTCGGAGATCCCTCTCGCCGTGCGGCGATCGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCGCAGACGTGCCGGACCATTTCTTGTGCCCGATCTCGCTGGACATGATGAGGGACCCCGTGACGGCGCCGACGGGGATCACGTACGACCGGGACGGGGTGGAGGTGTGGCTGGAGCGCGGGCGGNCGACGTGCCCCGTCACCGGCCGCCCGCTGCGGCCGGAGGAACTGGTGCCGAACATGCCACGCGGAGGATGATCCAGGAATGGTTGCGTCGCGAACCGGCCCTTCGGGTTGGAGCGCGTGCCACGCCGCGGGTGCCCGTTTCCGCCGCCGACGCGCGCGAGATCCTCGAGGGCGTCGCCGCGGCGGCGCGGCGAGGGGACGCGGCGGCGTTCCGGAAGGATGGTGGCCAGGGCTAGGGCGCTCGGGAAAGG]

[+] EMBL AU100984             [ATGACTCGCGCCCGCGCCCGCGCCCGCGCCGTGCGGCTGGCCGTGTCGGAGATCCCTCTCGCCGTGCGGCGATCGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCGCAGACGTGCCGGACCATTTCTTGTGCCCGATCTCGCTGGACATGATGAGGGACCCCGTGACGGCGCCGACGGGGATCACGTACGACCGGGACGGGGTGGAGGTGTGGCTGGAGCGCGGGCGGNCGACGTGCCCCGTCACCGGCCGCCCGCTGCGGCCGGAGGAACTGGTGCCGAACATGCCACGCGGAGGATGATCCAGGAATGGTTGCGTCGCGAACCGGCCCTTCGGGTTGGAGCGCGTGCCACGCCGCGGGTGCCCGTTTCCGCCGCCGACGCGCGCGAGATCCTCGAGGGCGTCGCCGCGGCGGCGCGGCGAGGGGACGCGGCGGCGTTCCGGAAGGATGGTGGCCAGGGCTAGGGCGCTCGGGAAAGG]




>consensus_3586#0
ATGACTCGCGCCCGCGCCCGCGCCCGCGCCGTGCGGCTGGCCGTGTCGGAGATCCCTCTC
GCCGTGCGGCGATCGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCGCAGACGTGCCG
GACCATTTCTTGTGCCCGATCTCGCTGGACATGATGAGGGACCCCGTGACGGCGCCGACG
GGGATCACGTACGACCGGGACGGGGTGGAGGTGTGGCTGGAGCGCGGGCGGNCGACGTGC
CCCGTCACCGGCCGCCCGCTGCGGCCGGAGGAACTGGTGCCGAACATGCCACGCGGAGGA
TGATCCAGGAATGGTTGCGTCGCGAACCGGCCCTTCGGGTTGGAGCGCGTGCCACGCCGC
GGGTGCCCGTTTCCGCCGCCGACGCGCGCGAGATCCTCGAGGGCGTCGCCGCGGCGGCGC
GGCGAGGGGACGCGGCGGCGTTCCGGAAGGATGGTGGCCAGGGCTAGGGCGCTCGGGAAA
GG

consensusID : consensus_3586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [CNGTCACNNCGATNACTCGNNCCCANACCNACNCCNNGNCNNTNCNCTGTGCCGTGTCGGAGNTCCCTCTCGCCGTGNGCANTACGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCGCAGACGTGCCGGACCATTTCTTGTGCCCGATCTCGCTNGACATGATGAGGGACCCCGTGACGGCGCCGACGGGGATCACGTACGACCGGGACGGGNTNGAGGTGTNGCTGGAGCGCGGGNGGCCGACGTGTCCC]

[+] EMBL AU063504             [CNGTCACNNCGATNACTCGNNCCCANACCNACNCCNNGNCNNTNCNCTGTGCCGTGTCGGAGNTCCCTCTCGCCGTGNGCANTACGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCGCAGACGTGCCGGACCATTTCTTGTGCCCGATCTCGCTNGACATGATGAGGGACCCCGTGACGGCGCCGACGGGGATCACGTACGACCGGGACGGGNTNGAGGTGTNGCTGGAGCGCGGGNGGCCGACGTGTCCC]




>consensus_3586#1
CNGTCACNNCGATNACTCGNNCCCANACCNACNCCNNGNCNNTNCNCTGTGCCGTGTCGG
AGNTCCCTCTCGCCGTGNGCANTACGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCG
CAGACGTGCCGGACCATTTCTTGTGCCCGATCTCGCTNGACATGATGAGGGACCCCGTGA
CGGCGCCGACGGGGATCACGTACGACCGGGACGGGNTNGAGGTGTNGCTGGAGCGCGGGN
GGCCGACGTGTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3586#0      -----------ATGACTCGCGCCCGCGCCCGCGCCCGCGCCGTGCGGCTGGCCGTGTCGG 49
consensus_3586#1      CNGTCACNNCGATNACTCGNNCCCANACCNACNCCNNGNCNNTNCNCTGTGCCGTGTCGG 60
                                 ** *****  ***   **  * **    *  * *     **********

consensus_3586#0      AGATCCCTCTCGCCGTGCGGCGATCGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCG 109
consensus_3586#1      AGNTCCCTCTCGCCGTGNGCANTACGGCGAGGCAGCAGCAGCAGCCGCCTGAGCCAGCCG 120
                      ** ************** *     ************************************

consensus_3586#0      CAGACGTGCCGGACCATTTCTTGTGCCCGATCTCGCTGGACATGATGAGGGACCCCGTGA 169
consensus_3586#1      CAGACGTGCCGGACCATTTCTTGTGCCCGATCTCGCTNGACATGATGAGGGACCCCGTGA 180
                      ************************************* **********************

consensus_3586#0      CGGCGCCGACGGGGATCACGTACGACCGGGACGGGGTGGAGGTGTGGCTGGAGCGCGGGC 229
consensus_3586#1      CGGCGCCGACGGGGATCACGTACGACCGGGACGGGNTNGAGGTGTNGCTGGAGCGCGGGN 240
                      *********************************** * ******* ************* 

consensus_3586#0      GGNCGACGTGCCCCGTCACCGGCCGCCCGCTGCGGCCGGAGGAACTGGTGCCGAACATGC 289
consensus_3586#1      GGCCGACGTGTCCC---------------------------------------------- 254
                      ** ******* ***                                              

consensus_3586#0      CACGCGGAGGATGATCCAGGAATGGTTGCGTCGCGAACCGGCCCTTCGGGTTGGAGCGCG 349
consensus_3586#1      ------------------------------------------------------------
                                                                                  

consensus_3586#0      TGCCACGCCGCGGGTGCCCGTTTCCGCCGCCGACGCGCGCGAGATCCTCGAGGGCGTCGC 409
consensus_3586#1      ------------------------------------------------------------
                                                                                  

consensus_3586#0      CGCGGCGGCGCGGCGAGGGGACGCGGCGGCGTTCCGGAAGGATGGTGGCCAGGGCTAGGG 469
consensus_3586#1      ------------------------------------------------------------
                                                                                  

consensus_3586#0      CGCTCGGGAAAGG 482
consensus_3586#1      -------------