Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3587 cluster # 3587       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3587#0 length = 1370 sequences # 2  

consensusID : consensus_3587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1370
fasta sequence
                              [CAGATGATGAGACTATGCTCAAGCTGCGATCATCACCAGTAACAGCTGTGAGGTTCACAATGCTTGCAATCACCTGGCCATCAGCATCCGCGACCTTGTTGCAGTTGTCCGGATTGTCCATGATCTTGTTGAGGATTTTCACACCGAACCAGGTGAACTCCATGCTCACAGTCACATCGTTGCCAGAGTTGTCAGCAGCAACGATCAACGATGACACGATCGGCAGCATTGCTGGGAAGCTCTCAAGGAGAAGGTCCCGAGAGAGCTCCAAGATGACGCCTGCAGCATGCCCTCTGGTATTCACTTCCTTCCGGGTGTTGTTCGTCAGTCCTAGCATGCTGACCACGCCGCCGACCGTGTCGGCAGAAGCTCGGAGCCTCATGAGCGCCAGCGCTCTGTACTTGGGCACTCTAAGGATGCTGTCAAGAACACCGACCCCGACGAGGCGATCCGCGATGGAGTTGGATCGCACCAGCTCCATGGCGAAGCTAACCAGGTCCATGTTCATGGCTTCGCGGACGTTACCACCGGAGCATCTCAGGTAGGTGACAAGCATGTAATGGCTCACCATCTGCTTCCCCAAGGGGCCGAGCTGGTACGCCTCCGTGATCTTGAGCACCAGCTGAATGTCGGCGACGGTGAACATGGCTTGGGCTAGCAAGTCGGAGGCGCCCTGTACGAGCACCAGGCCGTAGAAGAGGTTGAGTGAACCCTTGATGCTCTTGTGGTCGCTGCTGCCCTGGTCCGCCGGATCAACATAGTCTTGCTTGCTCAGGCGCAGCGCGGCGAGGACGACGGAGGCGACGGCGGCGGAGTACAGCACGAGCGCGAAGCCCATCAGCAGGAGCTTGGCGAGGAAGAAGCCGCAGCTGCAGCGCTTGGCGTAGTATGACGCGACCTTGGCTCTCAAGCCTTGTGCTGTCACAGACGACGACGACACCTGCCGGTTGATGCTTATGTGTCTTTGCCAGCTTCCATTCTCCATAGCCTCAAATCTTTCGGTCTCTGCCGCCACCACTTCAGGAGCATTGAGGATGAACTGATCCCTTGGATCCACGGCACTGCTGAAAAGCCTGCCATTTGGAAAGTGGGATTGCAAAGTGCAAGTTAGTGAGGATCCGTTTAATTCACCCCGGCCTTCTTGTTTTGTACAAGGCACTATATGCGAGAGTTGAAGAAAGGAAGGGACATGTGTTGAGTTAATCTCGTTGTTTATGTTTTCATCATGTTCAGTCAAGTCCTGTATGGCGGTCTGAGTTC-AAATTGGTTAGTGTTTTGTATGGTGAGGTGAGCTGATCAGCCGTTAGTGAAAGCACAAAATAAGCACAAAGTGGAATTTTTTTTGAAATTATACTGTTGAAGTTTTTTTT]

[+] EMBL AK064098             [CAGATGATGAGACTATGCTCAAGCTGCGATCATCACCAGTAACAGCTGTGAGGTTCACAATGCTTGCAATCACCTGGCCATCAGCATCCGCGACCTTGTTGCAGTTGTCCGGATTGTCCATGATCTTGTTGAGGATTTTCACACCGAACCAGGTGAACTCCATGCTCACAGTCACATCGTTGCCAGAGTTGTCAGCAGCAACGATCAACGATGACACGATCGGCAGCATTGCTGGGAAGCTCTCAAGGAGAAGGTCCCGAGAGAGCTCCAAGATGACGCCTGCAGCATGCCCTCTGGTATTCACTTCCTTCCGGGTGTTGTTCGTCAGTCCTAGCATGCTGACCACGCCGCCGACCGTGTCGGCAGAAGCTCGGAGCCTCATGAGCGCCAGCGCTCTGTACTTGGGCACTCTAAGGATGCTGTCAAGAACACCGACCCCGACGAGGCGATCCGCGATGGAGTTGGATCGCACCAGCTCCATGGCGAAGCTAACCAGGTCCATGTTCATGGCTTCGCGGACGTTACCACCGGAGCATCTCAGGTAGGTGACAAGCATGTAATGGCTCACCATCTGCTTCCCCAAGGGGCCGAGCTGGTACGCCTCCGTGATCTTGAGCACCAGCTGAATGTCGGCGACGGTGAACATGGCTTGGGCTAGCAAGTCGGAGGCGCCCTGTACGAGCACCAGGCCGTAGAAGAGGTTGAGTGAACCCTTGATGCTCTTGTGGTCGCTGCTGCCCTGGTCCGCCGGATCAACATAGTCTTGCTTGCTCAGGCGCAGCGCGGCGAGGACGACGGAGGCGACGGCGGCGGAGTACAGCACGAGCGCGAAGCCCATCAGCAGGAGCTTGGCGAGGAAGAAGCCGCAGCTGCAGCGCTTGGCGTAGTATGACGCGACCTTGGCTCTCAAGCCTTGTGCTGTCACAGACGACGACGACACCTGCCGGTTGATGCTTATGTGTCTTTGCCAGCTTCCATTCTCCATAGCCTCAAATCTTTCGGTCTCTGCCGCCACCACTTCAGGAGCATTGAGGATGAACTGATCCCTTGGATCCACGGCACTGCTGAAAAGCCTGCCATTTGGAAAGTGGGATTGCAAAGTGCAAGTTAGTGAGGATCCGTTTAATTCACCCCGGCCTTCTTGTTTTGTACAAGGCACTATATGCGAGAGTTGAAGAAAGGAAGGGACATGTGTTGAGTTAATCTCGTTGTTTATGTTTTCATCATGTTCAGTCAAGTCCTGTATGGCGGTCTGAGTTC AAATTGGTTAGTGTTTTGTATGGTGAGGTGAGCTGATCAGCCGTTAGTGAAAGCA                                                       ]
[-] EMBL D42334               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 tGGATTGCAAAGTGCAAGTTAGTGAGGATCCGTTTAATTCACCCCGGCCTTCTTGTTTTGTACAAGGCAC ATATGCGAGAGTTGAAGAAAGGAAGGGACATGTGTTGAGTTAATCTCGTTGTTTATGTTTTCATCATGTTCAGTCAAGTCCTGTATGGCGGTCTGAGTTCGAAATTGGCCAGTGTTTTGTATGGTGAGGTGACGTGATCAGCCGTTAGTGAAAGCACAAAATAAGCACAAAGTGGAATTTTTTTTGAAATTATACTGTTGAAGTTTTTTTT]


>consensus_3587#0 CAGATGATGAGACTATGCTCAAGCTGCGATCATCACCAGTAACAGCTGTGAGGTTCACAA TGCTTGCAATCACCTGGCCATCAGCATCCGCGACCTTGTTGCAGTTGTCCGGATTGTCCA TGATCTTGTTGAGGATTTTCACACCGAACCAGGTGAACTCCATGCTCACAGTCACATCGT TGCCAGAGTTGTCAGCAGCAACGATCAACGATGACACGATCGGCAGCATTGCTGGGAAGC TCTCAAGGAGAAGGTCCCGAGAGAGCTCCAAGATGACGCCTGCAGCATGCCCTCTGGTAT TCACTTCCTTCCGGGTGTTGTTCGTCAGTCCTAGCATGCTGACCACGCCGCCGACCGTGT CGGCAGAAGCTCGGAGCCTCATGAGCGCCAGCGCTCTGTACTTGGGCACTCTAAGGATGC TGTCAAGAACACCGACCCCGACGAGGCGATCCGCGATGGAGTTGGATCGCACCAGCTCCA TGGCGAAGCTAACCAGGTCCATGTTCATGGCTTCGCGGACGTTACCACCGGAGCATCTCA GGTAGGTGACAAGCATGTAATGGCTCACCATCTGCTTCCCCAAGGGGCCGAGCTGGTACG CCTCCGTGATCTTGAGCACCAGCTGAATGTCGGCGACGGTGAACATGGCTTGGGCTAGCA AGTCGGAGGCGCCCTGTACGAGCACCAGGCCGTAGAAGAGGTTGAGTGAACCCTTGATGC TCTTGTGGTCGCTGCTGCCCTGGTCCGCCGGATCAACATAGTCTTGCTTGCTCAGGCGCA GCGCGGCGAGGACGACGGAGGCGACGGCGGCGGAGTACAGCACGAGCGCGAAGCCCATCA GCAGGAGCTTGGCGAGGAAGAAGCCGCAGCTGCAGCGCTTGGCGTAGTATGACGCGACCT TGGCTCTCAAGCCTTGTGCTGTCACAGACGACGACGACACCTGCCGGTTGATGCTTATGT GTCTTTGCCAGCTTCCATTCTCCATAGCCTCAAATCTTTCGGTCTCTGCCGCCACCACTT CAGGAGCATTGAGGATGAACTGATCCCTTGGATCCACGGCACTGCTGAAAAGCCTGCCAT TTGGAAAGTGGGATTGCAAAGTGCAAGTTAGTGAGGATCCGTTTAATTCACCCCGGCCTT CTTGTTTTGTACAAGGCACTATATGCGAGAGTTGAAGAAAGGAAGGGACATGTGTTGAGT TAATCTCGTTGTTTATGTTTTCATCATGTTCAGTCAAGTCCTGTATGGCGGTCTGAGTTC AAATTGGTTAGTGTTTTGTATGGTGAGGTGAGCTGATCAGCCGTTAGTGAAAGCACAAAA TAAGCACAAAGTGGAATTTTTTTTGAAATTATACTGTTGAAGTTTTTTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)