cluster # 36

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Oryza sativa
cluster # 36 cluster # 36 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_36#0 length = 388 sequences # 1

consensus_36#1 length = 345 sequences # 1

consensusID : consensus_36#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [GGTAATCCGAATCAACGGGAGGAGACATTCGCGGACAGCATCGAGCTCTTCGAGAAGGCAGCCTTCTGGATGGACAACCTTTCCGGCTTCCCTATCTCTACCGTATGCTGCCTAGGAATGAACTGAAAATATGTGTAATAATAAGTTGGCATCAGGCCCGATTATCAGCTACTTCCTCCGTTTCATAATGTAAGTCTTTCTAGCTTGTCCATATTAATATAGATGTTAATAAATCTAGGCATATATGTGTCTAGATTCATTAACATCTATACGAATATGATGCTAGAAAGTCTTATATTATGAAACGGAGGGACTAATTAATACATCCTCTGTTTCACTTATTTTTTTTATTTTGAATAAATTAATATATAGATTCACGTAAAAAAAA]

[+] EMBL BI811161             [GGTAATCCGAATCAACGGGAGGAGACATTCGCGGACAGCATCGAGCTCTTCGAGAAGGCAGCCTTCTGGATGGACAACCTTTCCGGCTTCCCTATCTCTACCGTATGCTGCCTAGGAATGAACTGAAAATATGTGTAATAATAAGTTGGCATCAGGCCCGATTATCAGCTACTTCCTCCGTTTCATAATGTAAGTCTTTCTAGCTTGTCCATATTAATATAGATGTTAATAAATCTAGGCATATATGTGTCTAGATTCATTAACATCTATACGAATATGATGCTAGAAAGTCTTATATTATGAAACGGAGGGACTAATTAATACATCCTCTGTTTCACTTATTTTTTTTATTTTGAATAAATTAATATATAGATTCACGTAAAAAAAA]




>consensus_36#0
GGTAATCCGAATCAACGGGAGGAGACATTCGCGGACAGCATCGAGCTCTTCGAGAAGGCA
GCCTTCTGGATGGACAACCTTTCCGGCTTCCCTATCTCTACCGTATGCTGCCTAGGAATG
AACTGAAAATATGTGTAATAATAAGTTGGCATCAGGCCCGATTATCAGCTACTTCCTCCG
TTTCATAATGTAAGTCTTTCTAGCTTGTCCATATTAATATAGATGTTAATAAATCTAGGC
ATATATGTGTCTAGATTCATTAACATCTATACGAATATGATGCTAGAAAGTCTTATATTA
TGAAACGGAGGGACTAATTAATACATCCTCTGTTTCACTTATTTTTTTTATTTTGAATAA
ATTAATATATAGATTCACGTAAAAAAAA

consensusID : consensus_36#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [TGAAAATATGTGTAATAATAAGTGGGCATCAGGCCCGATTATCAGCTACTTCCCCCGTTTCATAATATAAGTCTTTCAAGCATTGTCCCCATTAATATAGATGTTAATAAATTTAGGCATATATGTGTTTAGATTCATTAACATCTATACGAATATGAGCAATGTTAGAAAGTTTTATATAATGAAAGGGAGGGCCAAATTAAAAAATCCTCTGTTTCCCATTATTTTTTTTATTTTGAATAAATTAATATATAAATTCAGGTATGTGCTTGGTATATTTGTTTAAAATTCATATAAATACTAGTGAATTTAGATGAGGGATGAAGAGCCCAAAAAAAAAAAAAA]

[-] EMBL CF294988             [TGAAAATATGTGTAATAATAAGTGGGCATCAGGCCCGATTATCAGCTACTTCCCCCGTTTCATAATATAAGTCTTTCAAGCATTGTCCCCATTAATATAGATGTTAATAAATTTAGGCATATATGTGTTTAGATTCATTAACATCTATACGAATATGAGCAATGTTAGAAAGTTTTATATAATGAAAGGGAGGGCCAAATTAAAAAATCCTCTGTTTCCCATTATTTTTTTTATTTTGAATAAATTAATATATAAATTCAGGTATGTGCTTGGTATATTTGTTTAAAATTCATATAAATACTAGTGAATTTAGATGAGGGATGAAGAGCCCAAAAAAAAAAAAAA]




>consensus_36#1
TGAAAATATGTGTAATAATAAGTGGGCATCAGGCCCGATTATCAGCTACTTCCCCCGTTT
CATAATATAAGTCTTTCAAGCATTGTCCCCATTAATATAGATGTTAATAAATTTAGGCAT
ATATGTGTTTAGATTCATTAACATCTATACGAATATGAGCAATGTTAGAAAGTTTTATAT
AATGAAAGGGAGGGCCAAATTAAAAAATCCTCTGTTTCCCATTATTTTTTTTATTTTGAA
TAAATTAATATATAAATTCAGGTATGTGCTTGGTATATTTGTTTAAAATTCATATAAATA
CTAGTGAATTTAGATGAGGGATGAAGAGCCCAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_36#0      GGTAATCCGAATCAACGGGAGGAGACATTCGCGGACAGCATCGAGCTCTTCGAGAAGGCA 60
consensus_36#1      ------------------------------------------------------------
                                                                                

consensus_36#0      GCCTTCTGGATGGACAACCTTTCCGGCTTCCCTATCTCTACCGTATGCTGCCTAGGAATG 120
consensus_36#1      ------------------------------------------------------------
                                                                                

consensus_36#0      AACTGAAAATATGTGTAATAATAAGTTGGCATCAGGCCCGATTATCAGCTACTTCCTCCG 180
consensus_36#1      ---TGAAAATATGTGTAATAATAAGTGGGCATCAGGCCCGATTATCAGCTACTTCCCCCG 57
                       *********************** ***************************** ***

consensus_36#0      TTTCATAATGTAAGTCTTTCTAGC-TTGTCCATATTAATATAGATGTTAATAAATCTAGG 239
consensus_36#1      TTTCATAATATAAGTCTTTCAAGCATTGTCCCCATTAATATAGATGTTAATAAATTTAGG 117
                    ********* ********** *** ******  ********************** ****

consensus_36#0      CATATATGTGTCTAGATTCATTAACATCTATACGAATATGA----TGCTAGAAAGTCTTA 295
consensus_36#1      CATATATGTGTTTAGATTCATTAACATCTATACGAATATGAGCAATGTTAGAAAGTTTTA 177
                    *********** *****************************    ** ******** ***

consensus_36#0      TATTATGAAACGGAGGGACTAATTAATACATCCTCTGTTTCAC-TTATTTTTTTTATTTT 354
consensus_36#1      TATAATGAAAGGGAGGGCCAAATTAAAAAATCCTCTGTTTCCCATTATTTTTTTTATTTT 237
                    *** ****** ****** * ****** * ************ * ****************

consensus_36#0      GAATAAATTAATATATAGATTCACGTAAAAAAAA-------------------------- 388
consensus_36#1      GAATAAATTAATATATAAATTCAGGTATGTGCTTGGTATATTTGTTTAAAATTCATATAA 297
                    ***************** ***** ***                                 

consensus_36#0      ------------------------------------------------
consensus_36#1      ATACTAGTGAATTTAGATGAGGGATGAAGAGCCCAAAAAAAAAAAAAA 345