cluster # 3626

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Oryza sativa
cluster # 3626 cluster # 3626 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3626#0 length = 320 sequences # 1

consensus_3626#1 length = 281 sequences # 1

consensusID : consensus_3626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [TGCAGCCCCTCCGNGCGGGCCGCGATNGAGCGNGCGGCGGCGGGTGANGGCGGGGCGGCGGTGAAGGAGCGGGTGGTGNCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATNGCCTACGCCATGTCGGTGCTGCTCGGCCGNGCGCTCCCCGACGTCCGAGATGNGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATNCATGAGATGGGTCTTGCATCCCGTAGACCATTCAGAAAATGTGCAACGGTTGTCGGTNAGGTACTAGGTAAGTTCCANCCACATGGGAGATTCNGGCCGTATATGAAACCTTA]

[+] EMBL AU197266             [TGCAGCCCCTCCGNGCGGGCCGCGATNGAGCGNGCGGCGGCGGGTGANGGCGGGGCGGCGGTGAAGGAGCGGGTGGTGNCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATNGCCTACGCCATGTCGGTGCTGCTCGGCCGNGCGCTCCCCGACGTCCGAGATGNGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATNCATGAGATGGGTCTTGCATCCCGTAGACCATTCAGAAAATGTGCAACGGTTGTCGGTNAGGTACTAGGTAAGTTCCANCCACATGGGAGATTCNGGCCGTATATGAAACCTTA]




>consensus_3626#0
TGCAGCCCCTCCGNGCGGGCCGCGATNGAGCGNGCGGCGGCGGGTGANGGCGGGGCGGCG
GTGAAGGAGCGGGTGGTGNCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATNGCC
TACGCCATGTCGGTGCTGCTCGGCCGNGCGCTCCCCGACGTCCGAGATGNGCTCAAGCCA
GTGCACCGCAGGATACTTTATGCTATNCATGAGATGGGTCTTGCATCCCGTAGACCATTC
AGAAAATGTGCAACGGTTGTCGGTNAGGTACTAGGTAAGTTCCANCCACATGGGAGATTC
NGGCCGTATATGAAACCTTA

consensusID : consensus_3626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [GTCGTGGCCGTCCCCGCCGTCCGCTTCCTCTCCTCCTCATCCTCCTCCTCGGACGGCTCGCGCTCCGTGCAGCCCCTCCGCGCGGGCCGCGATGAGCGGGCGGCGGCGGGTGAGGGCGGTNTTTTTNGTGAAGGAGCGGGTGGTGCCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATGGCCTACGCCATGTCGGTGCTGCTCGGCCGCGCGCTCCCCGACGTCCGAGATGGGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATGCATGAGA]

[+] EMBL AU176395             [GTCGTGGCCGTCCCCGCCGTCCGCTTCCTCTCCTCCTCATCCTCCTCCTCGGACGGCTCGCGCTCCGTGCAGCCCCTCCGCGCGGGCCGCGATGAGCGGGCGGCGGCGGGTGAGGGCGGTNTTTTTNGTGAAGGAGCGGGTGGTGCCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTACATGGCCTACGCCATGTCGGTGCTGCTCGGCCGCGCGCTCCCCGACGTCCGAGATGGGCTCAAGCCAGTGCACCGCAGGATACTTTATGCTATGCATGAGA]




>consensus_3626#1
GTCGTGGCCGTCCCCGCCGTCCGCTTCCTCTCCTCCTCATCCTCCTCCTCGGACGGCTCG
CGCTCCGTGCAGCCCCTCCGCGCGGGCCGCGATGAGCGGGCGGCGGCGGGTGAGGGCGGT
NTTTTTNGTGAAGGAGCGGGTGGTGCCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGTA
CATGGCCTACGCCATGTCGGTGCTGCTCGGCCGCGCGCTCCCCGACGTCCGAGATGGGCT
CAAGCCAGTGCACCGCAGGATACTTTATGCTATGCATGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3626#0      ------------------------------------------------------------
consensus_3626#1      GTCGTGGCCGTCCCCGCCGTCCGCTTCCTCTCCTCCTCATCCTCCTCCTCGGACGGCTCG 60
                                                                                  

consensus_3626#0      -------TGCAGCCCCTCCGNGCGGGCCGCGATNGAGCGNGCGGCGGCGGGTGANGGCGG 53
consensus_3626#1      CGCTCCGTGCAGCCCCTCCGCGCGGGCCGCGATG-AGCGGGCGGCGGCGGGTGAGGGCGG 119
                             ************* ************  **** ************** *****

consensus_3626#0      GGCGGC-GGTGAAGGAGCGGGTGGTGNCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGT 112
consensus_3626#1      TNTTTTTNGTGAAGGAGCGGGTGGTGCCCGTGGAGCTCCACAAGGAGGCCACCGAGGCGT 179
                              ****************** *********************************

consensus_3626#0      ACATNGCCTACGCCATGTCGGTGCTGCTCGGCCGNGCGCTCCCCGACGTCCGAGATGNGC 172
consensus_3626#1      ACATGGCCTACGCCATGTCGGTGCTGCTCGGCCGCGCGCTCCCCGACGTCCGAGATGGGC 239
                      **** ***************************** ********************** **

consensus_3626#0      TCAAGCCAGTGCACCGCAGGATACTTTATGCTATNCATGAGATGGGTCTTGCATCCCGTA 232
consensus_3626#1      TCAAGCCAGTGCACCGCAGGATACTTTATGCTATGCATGAGA------------------ 281
                      ********************************** *******                  

consensus_3626#0      GACCATTCAGAAAATGTGCAACGGTTGTCGGTNAGGTACTAGGTAAGTTCCANCCACATG 292
consensus_3626#1      ------------------------------------------------------------
                                                                                  

consensus_3626#0      GGAGATTCNGGCCGTATATGAAACCTTA 320
consensus_3626#1      ----------------------------