cluster # 3636

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Oryza sativa
cluster # 3636 cluster # 3636 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3636#0 length = 1291 sequences # 1

consensus_3636#1 length = 509 sequences # 1

consensusID : consensus_3636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1291
fasta sequence

                              [TTTCTTGACAGAATATTTGTGATGCCTTCAAGGTTGTGCCTTAATTCAGTGCACAATACAAGGGGGATTATTAATCAAAGCGATGCGACTTCCAATAAAAGTGGCAGGTGGGAAACAAGTTCATGTGCGATGGAATCTTTGTATGACATAGACCTCATATCAAGAACTGTTCCTGTTGTTTTGGACAATCCACAATCATGGTATGCTATAGTATCAAGAAGTACGAAGCTAGGAGAGGAAGGAGATGTAGCACATGCACAAGGAGTTAGCAGACAAGAACTCAAAGAAAACACACTTTACTCAAAGGCATTCCTCATAAACCGCACCGCAAGTCCTCTTGCTTGGTTTATGGAGTGCAAGGATCGGACCAAGCGTAGCTCTGTGATGTTACCATACAATTTTCTGCCATCTATGCCAGCAAGAAAACTGAGGGATGCAGCAAACAAGATTAAAGTGATACTTGGTGACTACGATGCTATTCATGTAAGACGGGGTGATCTACTGAAGAATAGGAAAGATCGATTTGGTGTTGAGCGAAGCCTTCATCCTCATCTGGACAGAGATACCCATCCTGAGAACATCAAAAGAAGAATTGCAAAGTGGATTCCGCGAGGCCGTACTCTTTTCATTGCTTCAAATGAAAGGACACCAGGCTTCTTTTCACCTCTATCAGACAGATACAAGTTAGCATACTCATCAAACTTCAGCAGCATATTGGAGCCAGTAATCGATAACAACTATCAGCTGTTCATGGTCGAAAGGTTAATCATGCAAGGAGCAAGGAAGTTTGTGAAGACCATGAAAGAATTCGATAATGACCTTTCTCTTTGCGATGACCCTAAAAAGAACACCAAAGTCTGGGAAGAAGCAGTTTATACAGATGGCTGATGGTTCGTATTTGACCGTATTTGACCTTCCATTGCATATGAAGTACAGCTCGCAAACTATCACTAATGGTTTTGCATAGATAATAGTATAATACTGTCATATGAATATATATGATTAAAAAGTTTTACTTCTGATCTGAAGTTACACTCAAGCTAGGACACTCAAGTCAACCGACAGAACAAGGGGAAGCATGCATGTTTCCTTTCTTCAGACAAGAGATGTTCAATTTGTTCCTCTCTCTTTTTTCTTTGATACACCTGGGAAGAGACTATATATGCTGGTGTGTGATGTAACTTCATCGTGGTTTTGATTTAAACCAAATTGTAGTGTATATGTAATAGGCAATTACCTATCAGCTAATGGTGAATACATCTGTAATTAATTTGTCAATCTGGAAATTGAT]

[+] EMBL AK100810             [TTTCTTGACAGAATATTTGTGATGCCTTCAAGGTTGTGCCTTAATTCAGTGCACAATACAAGGGGGATTATTAATCAAAGCGATGCGACTTCCAATAAAAGTGGCAGGTGGGAAACAAGTTCATGTGCGATGGAATCTTTGTATGACATAGACCTCATATCAAGAACTGTTCCTGTTGTTTTGGACAATCCACAATCATGGTATGCTATAGTATCAAGAAGTACGAAGCTAGGAGAGGAAGGAGATGTAGCACATGCACAAGGAGTTAGCAGACAAGAACTCAAAGAAAACACACTTTACTCAAAGGCATTCCTCATAAACCGCACCGCAAGTCCTCTTGCTTGGTTTATGGAGTGCAAGGATCGGACCAAGCGTAGCTCTGTGATGTTACCATACAATTTTCTGCCATCTATGCCAGCAAGAAAACTGAGGGATGCAGCAAACAAGATTAAAGTGATACTTGGTGACTACGATGCTATTCATGTAAGACGGGGTGATCTACTGAAGAATAGGAAAGATCGATTTGGTGTTGAGCGAAGCCTTCATCCTCATCTGGACAGAGATACCCATCCTGAGAACATCAAAAGAAGAATTGCAAAGTGGATTCCGCGAGGCCGTACTCTTTTCATTGCTTCAAATGAAAGGACACCAGGCTTCTTTTCACCTCTATCAGACAGATACAAGTTAGCATACTCATCAAACTTCAGCAGCATATTGGAGCCAGTAATCGATAACAACTATCAGCTGTTCATGGTCGAAAGGTTAATCATGCAAGGAGCAAGGAAGTTTGTGAAGACCATGAAAGAATTCGATAATGACCTTTCTCTTTGCGATGACCCTAAAAAGAACACCAAAGTCTGGGAAGAAGCAGTTTATACAGATGGCTGATGGTTCGTATTTGACCGTATTTGACCTTCCATTGCATATGAAGTACAGCTCGCAAACTATCACTAATGGTTTTGCATAGATAATAGTATAATACTGTCATATGAATATATATGATTAAAAAGTTTTACTTCTGATCTGAAGTTACACTCAAGCTAGGACACTCAAGTCAACCGACAGAACAAGGGGAAGCATGCATGTTTCCTTTCTTCAGACAAGAGATGTTCAATTTGTTCCTCTCTCTTTTTTCTTTGATACACCTGGGAAGAGACTATATATGCTGGTGTGTGATGTAACTTCATCGTGGTTTTGATTTAAACCAAATTGTAGTGTATATGTAATAGGCAATTACCTATCAGCTAATGGTGAATACATCTGTAATTAATTTGTCAATCTGGAAATTGAT]




>consensus_3636#0
TTTCTTGACAGAATATTTGTGATGCCTTCAAGGTTGTGCCTTAATTCAGTGCACAATACA
AGGGGGATTATTAATCAAAGCGATGCGACTTCCAATAAAAGTGGCAGGTGGGAAACAAGT
TCATGTGCGATGGAATCTTTGTATGACATAGACCTCATATCAAGAACTGTTCCTGTTGTT
TTGGACAATCCACAATCATGGTATGCTATAGTATCAAGAAGTACGAAGCTAGGAGAGGAA
GGAGATGTAGCACATGCACAAGGAGTTAGCAGACAAGAACTCAAAGAAAACACACTTTAC
TCAAAGGCATTCCTCATAAACCGCACCGCAAGTCCTCTTGCTTGGTTTATGGAGTGCAAG
GATCGGACCAAGCGTAGCTCTGTGATGTTACCATACAATTTTCTGCCATCTATGCCAGCA
AGAAAACTGAGGGATGCAGCAAACAAGATTAAAGTGATACTTGGTGACTACGATGCTATT
CATGTAAGACGGGGTGATCTACTGAAGAATAGGAAAGATCGATTTGGTGTTGAGCGAAGC
CTTCATCCTCATCTGGACAGAGATACCCATCCTGAGAACATCAAAAGAAGAATTGCAAAG
TGGATTCCGCGAGGCCGTACTCTTTTCATTGCTTCAAATGAAAGGACACCAGGCTTCTTT
TCACCTCTATCAGACAGATACAAGTTAGCATACTCATCAAACTTCAGCAGCATATTGGAG
CCAGTAATCGATAACAACTATCAGCTGTTCATGGTCGAAAGGTTAATCATGCAAGGAGCA
AGGAAGTTTGTGAAGACCATGAAAGAATTCGATAATGACCTTTCTCTTTGCGATGACCCT
AAAAAGAACACCAAAGTCTGGGAAGAAGCAGTTTATACAGATGGCTGATGGTTCGTATTT
GACCGTATTTGACCTTCCATTGCATATGAAGTACAGCTCGCAAACTATCACTAATGGTTT
TGCATAGATAATAGTATAATACTGTCATATGAATATATATGATTAAAAAGTTTTACTTCT
GATCTGAAGTTACACTCAAGCTAGGACACTCAAGTCAACCGACAGAACAAGGGGAAGCAT
GCATGTTTCCTTTCTTCAGACAAGAGATGTTCAATTTGTTCCTCTCTCTTTTTTCTTTGA
TACACCTGGGAAGAGACTATATATGCTGGTGTGTGATGTAACTTCATCGTGGTTTTGATT
TAAACCAAATTGTAGTGTATATGTAATAGGCAATTACCTATCAGCTAATGGTGAATACAT
CTGTAATTAATTTGTCAATCTGGAAATTGAT

consensusID : consensus_3636#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [CCGGCAAGCACTGCGGCACCTGCGCCGGCCTCGGCCACCAGGAGTCCAGCCTCCGCTGCGCCCTCGAGGAGGCTCTCTTCCTCGGCAGAATATTTGTTATGCCCTCAAGAATGTGCCTTAGCTCGGTACATAACACAAAAGGAATCCTCCATTCAACCAATGCAACTTCGGAGCAAAGATGGGAAGAAAATTCTTGCTCAATGGATTCTCTATATGATATAGACCTTATCTCAAAAATAGTACCTGTTATTCTGGACAATTCCAAGACATGGCATGAGATAATGTCAAGAAGTATGAAATCAGATGGAGGCATGGCACATGTTCAAGGAATTGGCAGAGCTGAACTCAAAGATAATCCCCTGTATTCTAAAGCTCTCGTAATAAACCGCACTGCAAGTCCTCTTGCTTGGTTTATGGAGTGCAAGGATCGCAAAAGCCGCAGTTCCGTGATGCTTTCTTATACCTTCTTGCCAGTATGCCAGCTAAAAAATTGAGGGATGCAGCAAATA]

[+] EMBL AU070565             [CCGGCAAGCACTGCGGCACCTGCGCCGGCCTCGGCCACCAGGAGTCCAGCCTCCGCTGCGCCCTCGAGGAGGCTCTCTTCCTCGGCAGAATATTTGTTATGCCCTCAAGAATGTGCCTTAGCTCGGTACATAACACAAAAGGAATCCTCCATTCAACCAATGCAACTTCGGAGCAAAGATGGGAAGAAAATTCTTGCTCAATGGATTCTCTATATGATATAGACCTTATCTCAAAAATAGTACCTGTTATTCTGGACAATTCCAAGACATGGCATGAGATAATGTCAAGAAGTATGAAATCAGATGGAGGCATGGCACATGTTCAAGGAATTGGCAGAGCTGAACTCAAAGATAATCCCCTGTATTCTAAAGCTCTCGTAATAAACCGCACTGCAAGTCCTCTTGCTTGGTTTATGGAGTGCAAGGATCGCAAAAGCCGCAGTTCCGTGATGCTTTCTTATACCTTCTTGCCAGTATGCCAGCTAAAAAATTGAGGGATGCAGCAAATA]




>consensus_3636#1
CCGGCAAGCACTGCGGCACCTGCGCCGGCCTCGGCCACCAGGAGTCCAGCCTCCGCTGCG
CCCTCGAGGAGGCTCTCTTCCTCGGCAGAATATTTGTTATGCCCTCAAGAATGTGCCTTA
GCTCGGTACATAACACAAAAGGAATCCTCCATTCAACCAATGCAACTTCGGAGCAAAGAT
GGGAAGAAAATTCTTGCTCAATGGATTCTCTATATGATATAGACCTTATCTCAAAAATAG
TACCTGTTATTCTGGACAATTCCAAGACATGGCATGAGATAATGTCAAGAAGTATGAAAT
CAGATGGAGGCATGGCACATGTTCAAGGAATTGGCAGAGCTGAACTCAAAGATAATCCCC
TGTATTCTAAAGCTCTCGTAATAAACCGCACTGCAAGTCCTCTTGCTTGGTTTATGGAGT
GCAAGGATCGCAAAAGCCGCAGTTCCGTGATGCTTTCTTATACCTTCTTGCCAGTATGCC
AGCTAAAAAATTGAGGGATGCAGCAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3636#0      ------------------------------------------------------------
consensus_3636#1      CCGGCAAGCACTGCGGCACCTGCGCCGGCCTCGGCCACCAGGAGTCCAGCCTCCGCTGCG 60
                                                                                  

consensus_3636#0      -----------------TTTCTTGACAGAATATTTGTGATGCCTTCAAGGTTGTGCCTTA 43
consensus_3636#1      CCCTCGAGGAGGCTCTCTTCCTCGGCAGAATATTTGTTATGCCCTCAAGAATGTGCCTTA 120
                                       ** ** * ************ ***** *****  *********

consensus_3636#0      ATTCAGTGCACAATACAAGGGGGATTATTAATCAAAGCGATGCGACTTCCAATAAAAGTG 103
consensus_3636#1      GCTCGGTACATAACACAAAAGGAATCCTCCATTCAACCAATGCAACTTCGGAGCAAAG-- 178
                        ** ** ** ** ****  ** **  *  **  ** * **** *****  *  ****  

consensus_3636#0      GCAGGTGGGAAACAAGTTCATGTGCGATGGAATCTTTGTATGACATAGACCTCATATCAA 163
consensus_3636#1      ----ATGGGAAGAAAATTCTTGCTCAATGGATTCTCTATATGATATAGACCTTATCTCAA 234
                           ******  ** *** **  * ***** *** * ***** ******** ** ****

consensus_3636#0      GAACTGTTCCTGTTGTTTTGGACAATCCACAATCATGGTATGCTATAGTATCAAGAAGTA 223
consensus_3636#1      AAATAGTACCTGTTATTCTGGACAATTCCAAGACATGGCATGAGATAATGTCAAGAAGTA 294
                       **  ** ****** ** ******** *  *  ***** ***  *** * **********

consensus_3636#0      CGAAGCTAGGAGAGGAAGGAGATGTAGCACATGCACAAGGAGTTAGCAGACAAGAACTCA 283
consensus_3636#1      TGAAATCAG------ATGGAGGCATGGCACATGTTCAAGGAATTGGCAGAGCTGAACTCA 348
                       ***   **      * ****   * *******  ****** ** *****   *******

consensus_3636#0      AAGAAAACACACTTTACTCAAAGGCATTCCTCATAAACCGCACCGCAAGTCCTCTTGCTT 343
consensus_3636#1      AAGATAATCCCCTGTATTCTAAAGCTCTCGTAATAAACCGCACTGCAAGTCCTCTTGCTT 408
                      **** **  * ** ** ** ** **  ** * *********** ****************

consensus_3636#0      GGTTTATGGAGTGCAAGGATCGGACCAAGCGTAGCTCTGTGATGTTACCATACAATTTTC 403
consensus_3636#1      GGTTTATGGAGTGCAAGGATCGCAAAAGCCGCAGTTCCGTGATGCTTTCTTATACCTTCT 468
                      ********************** *  *  ** ** ** ****** *  * ** *  **  

consensus_3636#0      TGCCATCTATGCCAGCAAGAAAACTGAGGGATGCAGCAAACAAGATTAAAGTGATACTTG 463
consensus_3636#1      TGCCAG-TATGCCAGCTAAAAAATTGAGGGATGCAGCAAATA------------------ 509
                      *****  ********* * **** **************** *                  

consensus_3636#0      GTGACTACGATGCTATTCATGTAAGACGGGGTGATCTACTGAAGAATAGGAAAGATCGAT 523
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      TTGGTGTTGAGCGAAGCCTTCATCCTCATCTGGACAGAGATACCCATCCTGAGAACATCA 583
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      AAAGAAGAATTGCAAAGTGGATTCCGCGAGGCCGTACTCTTTTCATTGCTTCAAATGAAA 643
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      GGACACCAGGCTTCTTTTCACCTCTATCAGACAGATACAAGTTAGCATACTCATCAAACT 703
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      TCAGCAGCATATTGGAGCCAGTAATCGATAACAACTATCAGCTGTTCATGGTCGAAAGGT 763
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      TAATCATGCAAGGAGCAAGGAAGTTTGTGAAGACCATGAAAGAATTCGATAATGACCTTT 823
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      CTCTTTGCGATGACCCTAAAAAGAACACCAAAGTCTGGGAAGAAGCAGTTTATACAGATG 883
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      GCTGATGGTTCGTATTTGACCGTATTTGACCTTCCATTGCATATGAAGTACAGCTCGCAA 943
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      ACTATCACTAATGGTTTTGCATAGATAATAGTATAATACTGTCATATGAATATATATGAT 1003
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      TAAAAAGTTTTACTTCTGATCTGAAGTTACACTCAAGCTAGGACACTCAAGTCAACCGAC 1063
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      AGAACAAGGGGAAGCATGCATGTTTCCTTTCTTCAGACAAGAGATGTTCAATTTGTTCCT 1123
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      CTCTCTTTTTTCTTTGATACACCTGGGAAGAGACTATATATGCTGGTGTGTGATGTAACT 1183
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      TCATCGTGGTTTTGATTTAAACCAAATTGTAGTGTATATGTAATAGGCAATTACCTATCA 1243
consensus_3636#1      ------------------------------------------------------------
                                                                                  

consensus_3636#0      GCTAATGGTGAATACATCTGTAATTAATTTGTCAATCTGGAAATTGAT 1291
consensus_3636#1      ------------------------------------------------