cluster # 3645

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Oryza sativa
cluster # 3645 cluster # 3645 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3645#0 length = 648 sequences # 1

consensus_3645#1 length = 196 sequences # 1

consensusID : consensus_3645#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [CTCAACCTCGCCGCTCACGCTCGCCGCCGCCGCTTGCGTCGCGCTCGCCGGCCCTGCTCTTGTCGCTCTCGCCGCCGCCGCCGCCGCCGCTTTCGTCGCGCTCGCCGGCCGCACTCTCGTCACGCTCGCCGCCGCTGCTCTCGTCGCACTCGCCACCGCCGCCGCTTGCGTCGTGCTCGCCGGCCCCGCTCTCGTCGCTTACGTCGCGCTCACCGGCCGTGCTCTCTCACGCTCGACACCGCCGCCGCCGCTCGCATTGTGCTCAAGATGCTTGACGAGAAGCGCGAACGTGAGCTCACTCCCAGGAAGGATGATGCCAAAGAAATGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCTATTCTTGCTTCTAGCCAACAAAGCTTGATAAACTTGTTTTCTCACTTCTTCGGTCATGTCTTTCCTTCCTTCGATGGTTTACTTCAACGGGAGCCACGACATGTTCTAGCAAAAGGAAGAAAATCAAGTTCATTGATAGTACAAATAACCATGGCATGTTCTAGCAAAATCTAATTGTATCAAAAAGCAAGTTGGCTTACCAGCAAGGTGTCGTACATAATCGAAATCGACTGCACC]

[+] EMBL AK111071             [CTCAACCTCGCCGCTCACGCTCGCCGCCGCCGCTTGCGTCGCGCTCGCCGGCCCTGCTCTTGTCGCTCTCGCCGCCGCCGCCGCCGCCGCTTTCGTCGCGCTCGCCGGCCGCACTCTCGTCACGCTCGCCGCCGCTGCTCTCGTCGCACTCGCCACCGCCGCCGCTTGCGTCGTGCTCGCCGGCCCCGCTCTCGTCGCTTACGTCGCGCTCACCGGCCGTGCTCTCTCACGCTCGACACCGCCGCCGCCGCTCGCATTGTGCTCAAGATGCTTGACGAGAAGCGCGAACGTGAGCTCACTCCCAGGAAGGATGATGCCAAAGAAATGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCTATTCTTGCTTCTAGCCAACAAAGCTTGATAAACTTGTTTTCTCACTTCTTCGGTCATGTCTTTCCTTCCTTCGATGGTTTACTTCAACGGGAGCCACGACATGTTCTAGCAAAAGGAAGAAAATCAAGTTCATTGATAGTACAAATAACCATGGCATGTTCTAGCAAAATCTAATTGTATCAAAAAGCAAGTTGGCTTACCAGCAAGGTGTCGTACATAATCGAAATCGACTGCACC]




>consensus_3645#0
CTCAACCTCGCCGCTCACGCTCGCCGCCGCCGCTTGCGTCGCGCTCGCCGGCCCTGCTCT
TGTCGCTCTCGCCGCCGCCGCCGCCGCCGCTTTCGTCGCGCTCGCCGGCCGCACTCTCGT
CACGCTCGCCGCCGCTGCTCTCGTCGCACTCGCCACCGCCGCCGCTTGCGTCGTGCTCGC
CGGCCCCGCTCTCGTCGCTTACGTCGCGCTCACCGGCCGTGCTCTCTCACGCTCGACACC
GCCGCCGCCGCTCGCATTGTGCTCAAGATGCTTGACGAGAAGCGCGAACGTGAGCTCACT
CCCAGGAAGGATGATGCCAAAGAAATGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATG
GTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCTATTCTTGCT
TCTAGCCAACAAAGCTTGATAAACTTGTTTTCTCACTTCTTCGGTCATGTCTTTCCTTCC
TTCGATGGTTTACTTCAACGGGAGCCACGACATGTTCTAGCAAAAGGAAGAAAATCAAGT
TCATTGATAGTACAAATAACCATGGCATGTTCTAGCAAAATCTAATTGTATCAAAAAGCA
AGTTGGCTTACCAGCAAGGTGTCGTACATAATCGAAATCGACTGCACC

consensusID : consensus_3645#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 196
fasta sequence

                              [GAAATGGTAAGATAACACAACTTAATAATCGCATTACAAGGATGTCTCTATTAATTGAGTGCGGAACCTAACTAGCTTCATTCTAAATGTTCAATGCAGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCCATTCTTGCTTCTA]

[+] EMBL D43136               [GAAATGGTAAGATAACACAACTTAATAATCGCATTACAAGGATGTCTCTATTAATTGAGTGCGGAACCTAACTAGCTTCATTCTAAATGTTCAATGCAGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCCATTCTTGCTTCTA]




>consensus_3645#1
GAAATGGTAAGATAACACAACTTAATAATCGCATTACAAGGATGTCTCTATTAATTGAGT
GCGGAACCTAACTAGCTTCATTCTAAATGTTCAATGCAGCAAGAGTAGCCTTGGCTTCAT
CTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTT
CCCATTCTTGCTTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3645#0      CTCAACCTCGCCGCTCACGCTCGCCGCCGCCGCTTGCGTCGCGCTCGCCGGCCCTGCTCT 60
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      TGTCGCTCTCGCCGCCGCCGCCGCCGCCGCTTTCGTCGCGCTCGCCGGCCGCACTCTCGT 120
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      CACGCTCGCCGCCGCTGCTCTCGTCGCACTCGCCACCGCCGCCGCTTGCGTCGTGCTCGC 180
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      CGGCCCCGCTCTCGTCGCTTACGTCGCGCTCACCGGCCGTGCTCTCTCACGCTCGACACC 240
consensus_3645#1      ----------------------------------------GAAATGGTAAGAT-AACACA 19
                                                              *   *   * * *  **** 

consensus_3645#0      GCCGCCGCCGCTCGCATTGTGCTCAAGATGCTTGACGAGAAGCGCGAACGTGAGCTCACT 300
consensus_3645#1      ACT--TAATAATCGCATTACA---AGGATGTCTC-TATTAATTGAGTGCGGAACCTAACT 73
                       *         *******      * ****  *      **  * *  **  * ** ***

consensus_3645#0      CCCAGGAAGGATGATGCCAAAGAAATGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATG 360
consensus_3645#1      AGCTTCATTCTAAATGTTCAATGCA-GCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATG 132
                        *   *      ***   **   * **********************************

consensus_3645#0      GTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCTATTCTTGCT 420
consensus_3645#1      GTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCCATTCTTGCT 192
                      ************************************************** *********

consensus_3645#0      TCTAGCCAACAAAGCTTGATAAACTTGTTTTCTCACTTCTTCGGTCATGTCTTTCCTTCC 480
consensus_3645#1      TCTA-------------------------------------------------------- 196
                      ****                                                        

consensus_3645#0      TTCGATGGTTTACTTCAACGGGAGCCACGACATGTTCTAGCAAAAGGAAGAAAATCAAGT 540
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      TCATTGATAGTACAAATAACCATGGCATGTTCTAGCAAAATCTAATTGTATCAAAAAGCA 600
consensus_3645#1      ------------------------------------------------------------
                                                                                  

consensus_3645#0      AGTTGGCTTACCAGCAAGGTGTCGTACATAATCGAAATCGACTGCACC 648
consensus_3645#1      ------------------------------------------------