cluster # 3646

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Oryza sativa
cluster # 3646 cluster # 3646 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3646#0 length = 447 sequences # 1

consensus_3646#1 length = 382 sequences # 1

consensusID : consensus_3646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence

                              [TTTTTTTTTTTTTTTTTTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCGGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCATTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGTTTATATAGCAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGCTAGAGTTGATTCCACACGACATCCAGATTGGATGAATCAGTTGAGCCGACTGCCGCAATATCATCCAAAACCTACAAGAATCCAGCTTATGCTACCCGGTCTGCTCGGTTGAACTTGCTTGTCCAG]

[+] EMBL CA760528             [TTTTTTTTTTTTTTTTTTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCGGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCATTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGTTTATATAGCAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGCTAGAGTTGATTCCACACGACATCCAGATTGGATGAATCAGTTGAGCCGACTGCCGCAATATCATCCAAAACCTACAAGAATCCAGCTTATGCTACCCGGTCTGCTCGGTTGAACTTGCTTGTCCAG]




>consensus_3646#0
TTTTTTTTTTTTTTTTTTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCC
GGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGG
CCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCC
ATTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGC
TCCCAAGACAACTACATGTAAGGTTTATATAGCAGGCAGCAAATACGCCGTAGTTACTAG
AAACTAATATCGCTATGTTGCTAGAGTTGATTCCACACGACATCCAGATTGGATGAATCA
GTTGAGCCGACTGCCGCAATATCATCCAAAACCTACAAGAATCCAGCTTATGCTACCCGG
TCTGCTCGGTTGAACTTGCTTGTCCAG

consensusID : consensus_3646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [CGVGAAAAAATGTACATTTCATGATGAGATTAGATAAGTTGCAACCAGAAATGTAGAATCAGCCTGAAAAATATGAGCTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCAGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCACTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGKTTTATATAGAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGC]

[+] EMBL BE230773             [CGVGAAAAAATGTACATTTCATGATGAGATTAGATAAGTTGCAACCAGAAATGTAGAATCAGCCTGAAAAATATGAGCTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGCCAGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAGGCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTCCACTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTGCTCCCAAGACAACTACATGTAAGGKTTTATATAGAGGCAGCAAATACGCCGTAGTTACTAGAAACTAATATCGCTATGTTGC]




>consensus_3646#1
CGVGAAAAAATGTACATTTCATGATGAGATTAGATAAGTTGCAACCAGAAATGTAGAATC
AGCCTGAAAAATATGAGCTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGC
CAGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAG
GCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTC
CACTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTG
CTCCCAAGACAACTACATGTAAGGKTTTATATAGAGGCAGCAAATACGCCGTAGTTACTA
GAAACTAATATCGCTATGTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3646#0      ------------------------------------------------------------
consensus_3646#1      CGVGAAAAAATGTACATTTCATGATGAGATTAGATAAGTTGCAACCAGAAATGTAGAATC 60
                                                                                  

consensus_3646#0      -TTTTTTTTTTTTTTTTTTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGC 59
consensus_3646#1      AGCCTGAAAAATATGAGCTACTATGATGGAATAAAGGAGAAATAACCTACAGAACACAGC 120
                          *      * *    ******************************************

consensus_3646#0      CGGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAG 119
consensus_3646#1      CAGTTTACAAAATGGAAGATTGGTACAAGAATCATGAGTCCCCGGTAGATTGGCCCAAAG 180
                      * **********************************************************

consensus_3646#0      GCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTC 179
consensus_3646#1      GCCTTAAAATGTAGTAGGAAAGAACATGGCTTAATTCGGATGCTAATCCAGTAGCTGGTC 240
                      ************************************************************

consensus_3646#0      CATTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTG 239
consensus_3646#1      CACTGGCTGTCGCACCACCGTTTCTGAAGAAACTCTTCTATTCGTGACACACTGCTGCTG 300
                      ** *********************************************************

consensus_3646#0      CTCCCAAGACAACTACATGTAAGGTTT-ATATAGCAGGCAGCAAATACGCCGTAGTTACT 298
consensus_3646#1      CTCCCAAGACAACTACATGTAAGGKTTTATATAG-AGGCAGCAAATACGCCGTAGTTACT 359
                      ************************ ** ****** *************************

consensus_3646#0      AGAAACTAATATCGCTATGTTGCTAGAGTTGATTCCACACGACATCCAGATTGGATGAAT 358
consensus_3646#1      AGAAACTAATATCGCTATGTTGC------------------------------------- 382
                      ***********************                                     

consensus_3646#0      CAGTTGAGCCGACTGCCGCAATATCATCCAAAACCTACAAGAATCCAGCTTATGCTACCC 418
consensus_3646#1      ------------------------------------------------------------
                                                                                  

consensus_3646#0      GGTCTGCTCGGTTGAACTTGCTTGTCCAG 447
consensus_3646#1      -----------------------------