These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1985 fasta sequence [CTAGCATATCCAAATCCGTCTTCATTTTCATATGAACGGCGTTTTTTCTGCCCTTTCGAGTATGCCCTCCAGCCTCCTGCTTGGTATAAACCTGAACATATAGCATTGGAGAAACCTGAACTTCCCCTTGGAGTTTCTGAGCTCAGGAAATATCGTGGACCACAGTGTTTTATGATTCCTGGAAACCATGATTGGTTTGATGGACTGCACACATTCATGAGGTATATCTGTCATAAAAGTTGGCTGGGTGGGTGGTTCCTACCTCAGAAGAGGAGTTATTTTGCCTTAAAGCTTCCTAATGGGTGGTGGGTTTTTGGCCTTGACCAAGCTCTTCATGGTGACATTGATGTCTATCAGTTCAAGTTTTTTGCAGAGCTATGTCAACAAAAGGTTGGAGAAAGTGATTCTGTAATTCTTATAACTCATGAGCCAAATTGGCTTCTTGATTGGTACTGGGGTGATAAAACTGGAACAAACGTTGAGTATTTAATACGTGAATACCTCAAGGGAAGATGCAAACTGCGGATGGCTGGGGATCTGCACCATTATATGCGCCATTCTTTCATTGAATCTAAAGAACCAGTTCATGTGCAACACTTACTTGTAAATGGTTGTGGTGGGGCCTTTCTGCATCCAACACATGTCTTTGAGAATTTCAGAGAATTTTATGGGAACAAATATGAAACAAAGATTGCATATCCTTCTTATGACGATTCTAGCAAGATTGCACTTGGTAATATTTTGAAGTTCCGAAGGAAGAATTGGCAGTTTGATGTGATTGGTGGTTTTGTGTACTTTGTTTTGGTTTTCTCGATGTTTCCGCAGTGTGATTCCTTTCGTATCTTACGTGAAGACTCTTGGGCTGACCGTGTCAATAGTTTCTTCACTGCAATGTGGAATGTTGTTTTTGAGATTCTGGAGCATTCCTATGTATCCCTGGCTGGTGTTGTTACTCTATTGATGGTATCTTTTTTCTTTGTACCCACAAAACTATCGCGTAGAAGACGTGCCTTGCTTGGTTTTCTTCATGCTGTGGCCCATCTAACTTCAGCAGTGATACTGATGCTGCTTATGGAATTGGCTATTGAGATATGCATCCGCAACAATCTATTGGCAACATCAGGCTACCATACCCTCTACGAGTGGTATCGCAAGGTCGAAAGTGAGCATTTTCCTGATCCCACAGGACTTCGCACTCGTCTGGAACAATGGACTTTAGGTCTTTACCCTGCATGCATTAAGTACCTGATGTCTGCATTTGACATCCCTGAGGTTATGGCAGTTACGAGGAGCACAATCTGCAGAAAAGGAATAGAGTCCCTTCCTCGAGGAGGAGCGATCATCTACTATGTTTGCGTCTTCCTGTACTTTTGGGTCTTGTCAACACCAGTTGTATCACTGGTGTTTGGGAGCTACTTATACATATGCATAAACTGGTTTCATATTCATTTCGATGAGGCCTTCTCCTCACTGCGCATAGCCAATTACAAGGCATTTACACGGTTCCATATCAAGAAGAATGGAGACCTTGAAGTTTTCACCTTTGCTGTCGACAAGGTGCCAAAAGACTGGATGCTGGATCCAGACTGGGACATGGAGCCAAAGGAGCCATTCCAGATGAGCTACACCAGGAAGTTCCCCAGCAAATGGAGGGCCGCCTCCGGCTCGGACCCAACCAATGCGGTGCGGATCGTCGACCATTTCGTCATCCCTCGGACACCCCCAGATTCCCCAACCTCAGGATCTGCTAGTTGATCAATTGTAGCCTAGCTTAAGATCATAGTGTTGTAATGTACAGTGTAGTAGCTATCTTGTTCTATCTCCCTGTATAAATTGTACAGCAACACAAGAAGCCTTCTGACATACTCTAGCATAGAAGAAATAGGGAAAGAAAAAGAAAATGAGAAAAGGGTAGGATGGGGCACTGCTTGTAATGCTACAGATGTTTTTGTTAAACGAAACATTATTGGTTCAGTAATGATGGT] [+] EMBL AK069557 [CTAGCATATCCAAATCCGTCTTCATTTTCATATGAACGGCGTTTTTTCTGCCCTTTCGAGTATGCCCTCCAGCCTCCTGCTTGGTATAAACCTGAACATATAGCATTGGAGAAACCTGAACTTCCCCTTGGAGTTTCTGAGCTCAGGAAATATCGTGGACCACAGTGTTTTATGATTCCTGGAAACCATGATTGGTTTGATGGACTGCACACATTCATGAGGTATATCTGTCATAAAAGTTGGCTGGGTGGGTGGTTCCTACCTCAGAAGAGGAGTTATTTTGCCTTAAAGCTTCCTAATGGGTGGTGGGTTTTTGGCCTTGACCAAGCTCTTCATGGTGACATTGATGTCTATCAGTTCAAGTTTTTTGCAGAGCTATGTCAACAAAAGGTTGGAGAAAGTGATTCTGTAATTCTTATAACTCATGAGCCAAATTGGCTTCTTGATTGGTACTGGGGTGATAAAACTGGAACAAACGTTGAGTATTTAATACGTGAATACCTCAAGGGAAGATGCAAACTGCGGATGGCTGGGGATCTGCACCATTATATGCGCCATTCTTTCATTGAATCTAAAGAACCAGTTCATGTGCAACACTTACTTGTAAATGGTTGTGGTGGGGCCTTTCTGCATCCAACACATGTCTTTGAGAATTTCAGAGAATTTTATGGGAACAAATATGAAACAAAGATTGCATATCCTTCTTATGACGATTCTAGCAAGATTGCACTTGGTAATATTTTGAAGTTCCGAAGGAAGAATTGGCAGTTTGATGTGATTGGTGGTTTTGTGTACTTTGTTTTGGTTTTCTCGATGTTTCCGCAGTGTGATTCCTTTCGTATCTTACGTGAAGACTCTTGGGCTGACCGTGTCAATAGTTTCTTCACTGCAATGTGGAATGTTGTTTTTGAGATTCTGGAGCATTCCTATGTATCCCTGGCTGGTGTTGTTACTCTATTGATGGTATCTTTTTTCTTTGTACCCACAAAACTATCGCGTAGAAGACGTGCCTTGCTTGGTTTTCTTCATGCTGTGGCCCATCTAACTTCAGCAGTGATACTGATGCTGCTTATGGAATTGGCTATTGAGATATGCATCCGCAACAATCTATTGGCAACATCAGGCTACCATACCCTCTACGAGTGGTATCGCAAGGTCGAAAGTGAGCATTTTCCTGATCCCACAGGACTTCGCACTCGTCTGGAACAATGGACTTTAGGTCTTTACCCTGCATGCATTAAGTACCTGATGTCTGCATTTGACATCCCTGAGGTTATGGCAGTTACGAGGAGCACAATCTGCAGAAAAGGAATAGAGTCCCTTCCTCGAGGAGGAGCGATCATCTACTATGTTTGCGTCTTCCTGTACTTTTGGGTCTTGTCAACACCAGTTGTATCACTGGTGTTTGGGAGCTACTTATACATATGCATAAACTGGTTTCATATTCATTTCGATGAGGCCTTCTCCTCACTGCGCATAGCCAATTACAAGGCATTTACACGGTTCCATATCAAGAAGAATGGAGACCTTGAAGTTTTCACCTTTGCTGTCGACAAGGTGCCAAAAGACTGGATGCTGGATCCAGACTGGGACATGGAGCCAAAGGAGCCATTCCAGATGAGCTACACCAGGAAGTTCCCCAGCAAATGGAGGGCCGCCTCCGGCTCGGACCCAACCAATGCGGTGCGGATCGTCGACCATTTCGTCATCCCTCGGACACCCCCAGATTCCCCAACCTCAGGATCTGCTAGTTGATCAATTGTAGCCTAGCTTAAGATCATAGTGTTGTAATGTACAGTGTAGTAGCTATCTTGTTCTATCTCCCTGTATAAATTGTACAGCAACACAAGAAGCCTTCTGACATACTCTAGCATAGAAGAAATAGGGAAAGAAAAAGAAAATGAGAAAAGGGTAGGATGGGGCACTGCTTGTAATGCTACAGATGTTTTTGTTAAACGAAACATTATTGGTTCAGTAATGATGGT] consensusID : consensus_3666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 815 fasta sequence [TATGCTTATTATAATCCAAGATTGTGCAGTAAGTTTCTTGGTATCAATAATTATATGAGTGTTCTGTATTTTCACCTAATCTTGTTTAGTTACCTTTTCAGCTGTCCCTTATCCATGTTTCTGCATTTTGTGCCTTGTTGCAGGTTAAAGTATAGCTTGCTCTGTACTTTACAGCCACTGACCCGCTGTGGTAACAAGACGTCGTCTGAAGAGATAAATCTATTAATCGTAGAACTGCTAGCTGGATTGTGTTCTCTCTGTGGGAAAAAAAAAAAACATGAGGACAATTCACTTATTTCAAAGCTATCACGTATGCATAAGTTTAAAGAGCAGATTTGTTCATCCTGGTTTGTCTCTGCTAGTGATTACCCTCTTCTATCTGAACGGGCAATTTATGGAGAAATTGGTTCACTGCACACATTCATGAGGTATATATGTCATAAAAGTTGGCTGGGTGAGTGGTTTCTACCTCAGAAGATCATGAATTATTTAGCCTTAAAGCTTCCTGATTGGTGGTGGGTTTTTGGCCTTGATCAAGCTCTTCATGTTGACATTGATATCTGGAGTTCAAGTCTTTTTCAGAGCGTCAGAAGAAGGTTGAACAACAAGAAGTGAAGAGGTTTGTCACTACGATGGTGCTGTTCTGCCCTTTTGGCAAGAAGTTGGAAGAGTGGTGTCTTCAGGACATCCTTTGTTGCTTTTTTAGTGTTCCTTCTGCAGTCCTGGAACTGATATTTATATGTGCCCACAATTGGTGATAAATGACACTACTTATCTAGATAAAGAATGTGCATGTACCATACTGTTGTTAGCTC] [-] EMBL CB628519 [TATGCTTATTATAATCCAAGATTGTGCAGTAAGTTTCTTGGTATCAATAATTATATGAGTGTTCTGTATTTTCACCTAATCTTGTTTAGTTACCTTTTCAGCTGTCCCTTATCCATGTTTCTGCATTTTGTGCCTTGTTGCAGGTTAAAGTATAGCTTGCTCTGTACTTTACAGCCACTGACCCGCTGTGGTAACAAGACGTCGTCTGAAGAGATAAATCTATTAATCGTAGAACTGCTAGCTGGATTGTGTTCTCTCTGTGGGAAAAAAAAAAAACATGAGGACAATTCACTTATTTCAAAGCTATCACGTATGCATAAGTTTAAAGAGCAGATTTGTTCATCCTGGTTTGTCTCTGCTAGTGATTACCCTCTTCTATCTGAACGGGCAATTTATGGAGAAATTGGTTCACTGCACACATTCATGAGGTATATATGTCATAAAAGTTGGCTGGGTGAGTGGTTTCTACCTCAGAAGATCATGAATTATTTAGCCTTAAAGCTTCCTGATTGGTGGTGGGTTTTTGGCCTTGATCAAGCTCTTCATGTTGACATTGATATCTGGAGTTCAAGTCTTTTTCAGAGCGTCAGAAGAAGGTTGAACAACAAGAAGTGAAGAGGTTTGTCACTACGATGGTGCTGTTCTGCCCTTTTGGCAAGAAGTTGGAAGAGTGGTGTCTTCAGGACATCCTTTGTTGCTTTTTTAGTGTTCCTTCTGCAGTCCTGGAACTGATATTTATATGTGCCCACAATTGGTGATAAATGACACTACTTATCTAGATAAAGAATGTGCATGTACCATACTGTTGTTAGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3666#0 CTAGCATATCCAAATCCGTCTTCATTTTCATATGAACGGCGTTTTTTCTGCCCTTTCGAG 60 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 TATGCCCTCCAGCCTCCTGCTTGGTATAAACCTGAACATATAGCATTGGAGAAACCTGAA 120 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CTTCCCCTTGGAGTTTCTGAGCTCAGGAAATATCGTGGACCACAGTGTTTTATGATTCCT 180 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 GGAAACCATGATTGGTTTGATGGACTGCACACATTCATGAGGTATATCTGTCATAAAAGT 240 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 TGGCTGGGTGGGTGGTTCCTACCTCAGAAGAGGAGTTATTTTGCCTTAAAGCTTCCTAAT 300 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 GGGTGGTGGGTTTTTGGCCTTGACCAAGCTCTTCATGGTGACATTGATGTCTATCAGTTC 360 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 AAGTTTTTTGCAGAGCTATGTCAACAAAAGGTTGGAGAAAGTGATTCTGTAATTCTTATA 420 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 ACTCATGAGCCAAATTGGCTTCTTGATTGGTACTGGGGTGATAAAACTGGAACAAACGTT 480 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 GAGTATTTAATACGTGAATACCTCAAGGGAAGATGCAAACTGCGGATGGCTGGGGATCTG 540 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CACCATTATATGCGCCATTCTTTCATTGAATCTAAAGAACCAGTTCATGTGCAACACTTA 600 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CTTGTAAATGGTTGTGGTGGGGCCTTTCTGCATCCAACACATGTCTTTGAGAATTTCAGA 660 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 GAATTTTATGGGAACAAATATGAAACAAAGATTGCATATCCTTCTTATGACGATTCTAGC 720 consensus_3666#1 ------TATGCTTATTATAATCCAAGATTGTGCAGTAAGTTTCTTGGTATCAATAATTAT 54 **** * * ** ** * * * * * * * ** * consensus_3666#0 AAGATTGCACTTGGTAATATTTTGAAGTTCCGAAGGAAGAATTGGCAGTTTGATGTGATT 780 consensus_3666#1 ATGAGTGTTCTGTATTTTCACCTAATCTTGTTTAGTTACCTTTT-CAGCTGTCCCTTATC 113 * ** ** ** * * * * ** ** * ** *** * * ** consensus_3666#0 GGTGGTTTTGTGTACTTTGTTTTGGTTTTCTCGATGTTTCCGCAGTGTGATTCCTTTCGT 840 consensus_3666#1 CATG--TTTCTGCATTTTGT----GCCTTGTTGCAGGTT--AAAGTATAGCTTGCTCTGT 165 ** *** ** * ***** * ** * * * ** *** * * * ** consensus_3666#0 ATCTTACGTGAAGACTCTTGGGCTGACCGTGTCAATAGTTTCTTCACTGCAATGTGGAAT 900 consensus_3666#1 ACTTTAC----AGCCACT--GACCCGCTGTGGTAACAAGACGTCGTCTGAAGAGATAAAT 219 * **** ** * ** * * * *** ** * * *** * * *** consensus_3666#0 GTTGTTTTTGAGATTCTGG-AGCATTCCTATGTATCCCTGGCTGGTGTTGTTACTCTATT 959 consensus_3666#1 CTATTAATCGTAGAACTGCTAGCTGGATTGTGTTCTCTCTGTGGGAAAAAAAAAAAACAT 279 * * * * *** *** * *** * * ** * * consensus_3666#0 GATGGTATCTTTTTTCTTTGTACCCACAAAACTATCGCGTA-GAAGACGTGCCTTGCTTG 1018 consensus_3666#1 GAGGACAATTCACTTATTT-------CAAAGCTATCACGTATGCATAAGTTTAAAGAGCA 332 ** * * * ** *** **** ***** **** * * * ** * consensus_3666#0 GTTTTCTTCATGCTGTGGCCCATCTAACTTCAGCAGTGATACTGATGCTGCTTATGGAAT 1078 consensus_3666#1 GATTTGTTCATCCTG--GTTTGTCTC-TGCTAGTGATTACCCTCTTCTATCTGAACGGGC 389 * *** ***** *** * *** ** * * ** * ** * * consensus_3666#0 TGGCTATTGAGATATGCATCCGCAACAATCTATTGGCAACATCAGGCTACCATACCCTCT 1138 consensus_3666#1 AATTTATGGAGAAATTGGTTCACTGCA-CACATT-----CATGAGGT--ATATATGTCAT 441 *** **** ** * * * ** *** *** *** *** * consensus_3666#0 ACGAGTGGTATCGCAAGGTCGAAAGTGAGCATTTTCCT-GATCCCACAGGACTTCGCACT 1197 consensus_3666#1 AAAAGTTG----GCTGGGTGAGTGGTTTCTACCTCAGAAGATCATGAATTATTTAGCCTT 497 * *** * ** *** ** * * **** * * ** ** * consensus_3666#0 CGTCTGGAACAATGGACTTTAGGTCTTTACCCTGCATGCATTAAGTACCTGATGTCTGCA 1257 consensus_3666#1 AAAGCTTCCTGATTGGTGGTGGGTTTTTGGCCT---TG-ATCAAGCTCTTCATGTTGACA 553 ** * * *** *** *** ** ** *** * * **** ** consensus_3666#0 TTTGACATCCCTGAGGTTATGGCAGTTACGAGGAGCACAATCTGCAGAAAAGGAATAGAG 1317 consensus_3666#1 TT-GATATCTG-GAGTTCAAGTCTTTTTCAGAGCGT--------CAGAAGAAGGTTGAA- 602 ** ** *** *** * * * * ** * * * ***** * * * * consensus_3666#0 TCCCTTCCTCGAGGAGGAGCGATCATCTACTATGTTTGCGTCTTCCTGTACTTTTGGGTC 1377 consensus_3666#1 ----CAACAAGAAGTGAAGAGGTTTGTCACTACGATGGTGCTGTTCTGCCCTTTTGG--- 655 * ** * * ** * * **** * * * * * *** ******* consensus_3666#0 TTGTCAACACCAGTTGTATCACTGGTGTTTGGGAGCTACTTATACATATGCATAAACTGG 1437 consensus_3666#1 ----CAAGA--AGTTGGAAGAGTGGTGTCTTCAGGACATCCTTTGTTGCTTTTTTAGTG- 708 *** * ***** * * ****** * * * * * * * ** consensus_3666#0 TTTCATATTCATTTCGATGAGGCCTTCTCCTCACTGCGCATAGCCAATTACAAGGCATTT 1497 consensus_3666#1 TTCCTTCTGCAGTCCTGGAACTGATATTTATATGTGCCCACAATTGGTGATAAATGACAC 768 ** * * * ** * * * * * * *** ** * * * ** * consensus_3666#0 ACACGGTTCCATATCAAGAA-GAATGGAGACCTTGAAGTTTTCACCTTTGCTGTCGACAA 1556 consensus_3666#1 -TACTTATCTAGATAAAGAATGTGCATGTACCATACTGTTGTTAGCTC------------ 815 ** ** * ** ***** * *** * *** * * ** consensus_3666#0 GGTGCCAAAAGACTGGATGCTGGATCCAGACTGGGACATGGAGCCAAAGGAGCCATTCCA 1616 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 GATGAGCTACACCAGGAAGTTCCCCAGCAAATGGAGGGCCGCCTCCGGCTCGGACCCAAC 1676 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CAATGCGGTGCGGATCGTCGACCATTTCGTCATCCCTCGGACACCCCCAGATTCCCCAAC 1736 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 CTCAGGATCTGCTAGTTGATCAATTGTAGCCTAGCTTAAGATCATAGTGTTGTAATGTAC 1796 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 AGTGTAGTAGCTATCTTGTTCTATCTCCCTGTATAAATTGTACAGCAACACAAGAAGCCT 1856 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 TCTGACATACTCTAGCATAGAAGAAATAGGGAAAGAAAAAGAAAATGAGAAAAGGGTAGG 1916 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 ATGGGGCACTGCTTGTAATGCTACAGATGTTTTTGTTAAACGAAACATTATTGGTTCAGT 1976 consensus_3666#1 ------------------------------------------------------------ consensus_3666#0 AATGATGGT 1985 consensus_3666#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||