cluster # 3674

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Oryza sativa
cluster # 3674 cluster # 3674 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3674#0 length = 540 sequences # 1

consensus_3674#1 length = 251 sequences # 1

consensusID : consensus_3674#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CGAGCTTCAGTTCAGCTCGCCATTGCTAAGCCTGAAAGCTTCCTTCGHAGCGCACTTVGGAGCTGGAAGATGAGGAGGTTTTCTCTACATGCCGTGAGATATCTCGTGCTGTGGATGCTGCTGCGGTGTGGCCGTGAGCTCGTTGCAGCGGTGCCTCCTGATGGCTGGTACGATTACACTGCATACACCGACTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGKCTACCGCACGACGGAGACCGGCGTCTTCTCGCCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCACGGTTCTCGCGAGGACGTCTKCTGGGCCTTCCTCAAGGGCGGCTTCGYCCTCGACTGGCCAACACAAMCCTCAGTTATWTTTTTTCAGAATGCTGACAAGACCCCT]

[+] EMBL BE229586             [CGAGCTTCAGTTCAGCTCGCCATTGCTAAGCCTGAAAGCTTCCTTCGHAGCGCACTTVGGAGCTGGAAGATGAGGAGGTTTTCTCTACATGCCGTGAGATATCTCGTGCTGTGGATGCTGCTGCGGTGTGGCCGTGAGCTCGTTGCAGCGGTGCCTCCTGATGGCTGGTACGATTACACTGCATACACCGACTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGKCTACCGCACGACGGAGACCGGCGTCTTCTCGCCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCACGGTTCTCGCGAGGACGTCTKCTGGGCCTTCCTCAAGGGCGGCTTCGYCCTCGACTGGCCAACACAAMCCTCAGTTATWTTTTTTCAGAATGCTGACAAGACCCCT]




>consensus_3674#0
CGAGCTTCAGTTCAGCTCGCCATTGCTAAGCCTGAAAGCTTCCTTCGHAGCGCACTTVGG
AGCTGGAAGATGAGGAGGTTTTCTCTACATGCCGTGAGATATCTCGTGCTGTGGATGCTG
CTGCGGTGTGGCCGTGAGCTCGTTGCAGCGGTGCCTCCTGATGGCTGGTACGATTACACT
GCATACACCGACTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGG
TTCGGCAACAGCGACGACCCGACCGGKCTACCGCACGACGGAGACCGGCGTCTTCTCGCC
GGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAA
GCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGC
GCGGTGCATCGGCACGGTTCTCGCGAGGACGTCTKCTGGGCCTTCCTCAAGGGCGGCTTC
GYCCTCGACTGGCCAACACAAMCCTCAGTTATWTTTTTTCAGAATGCTGACAAGACCCCT

consensusID : consensus_3674#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [CGACTTTCAGTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGCTACCGCACGACGGAGACCGGCGTCTTCTCGNCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCA]

[+] EMBL AU093482             [CGACTTTCAGTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGCTACCGCACGACGGAGACCGGCGTCTTCTCGNCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCA]




>consensus_3674#1
CGACTTTCAGTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTT
CGGCAACAGCGACGACCCGACCGGCTACCGCACGACGGAGACCGGCGTCTTCTCGNCGGC
GTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCT
GGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCG
GTGCATCGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3674#0      CGAGCTTCAGTTCAGCTCGCCATTGCTAAGCCTGAAAGCTTCCTTCGHAGCGCACTTVGG 60
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      AGCTGGAAGATGAGGAGGTTTTCTCTACATGCCGTGAGATATCTCGTGCTGTGGATGCTG 120
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      CTGCGGTGTGGCCGTGAGCTCGTTGCAGCGGTGCCTCCTGATGGCTGGTACGATTACACT 180
consensus_3674#1      ------------------------------------------------------------
                                                                                  

consensus_3674#0      GCATACACCGACTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGG 240
consensus_3674#1      --CGACTTTCAGTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGG 58
                          **    * ************************************************

consensus_3674#0      TTCGGCAACAGCGACGACCCGACCGGKCTACCGCACGACGGAGACCGGCGTCTTCTCGCC 300
consensus_3674#1      TTCGGCAACAGCGACGACCCGACCGG-CTACCGCACGACGGAGACCGGCGTCTTCTCGNC 117
                      ************************** ******************************* *

consensus_3674#0      GGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAA 360
consensus_3674#1      GGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAA 177
                      ************************************************************

consensus_3674#0      GCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGC 420
consensus_3674#1      GCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGC 237
                      ************************************************************

consensus_3674#0      GCGGTGCATCGGCACGGTTCTCGCGAGGACGTCTKCTGGGCCTTCCTCAAGGGCGGCTTC 480
consensus_3674#1      GCGGTGCATCGGCA---------------------------------------------- 251
                      **************                                              

consensus_3674#0      GYCCTCGACTGGCCAACACAAMCCTCAGTTATWTTTTTTCAGAATGCTGACAAGACCCCT 540
consensus_3674#1      ------------------------------------------------------------