cluster # 3685

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3685 cluster # 3685 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3685#0 length = 905 sequences # 1

consensus_3685#1 length = 494 sequences # 1

consensusID : consensus_3685#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 905
fasta sequence

                              [CGCCACTCCCCTTCTTCCGCCCGAGCTCAAGTCCCAATCCGAGAGAGTCGATCAGCGGCAGCTAGAGCAGAGCGATGGCCGCGCTGCTGGGCATCCTCCTCGCGGCCTTCCTCGCCGCCGCCGCCGTCCTTTTTGCGCTCCGCCTGCTCCACTCCTTCCTGTGGGTCCCGCGCCGCCTGGAGCGCCGGTTCCGCCGGCAGGGCATCCGGGGCCCGCCGCGCCGCCCGCTCTCCGGCAACGCCGCCGGCTACCGCGACCTGCCCGCCGCCGCCCAGTCCGCGCCGCTCGCGTCCTTCCACCACGCCGTCGTGGCCCGCGTCGCGCCGCACCACCGCGAGTGGCCCGAGCGGTACGGCCGCCCGTTCGTGTTCTGGCTCGGGCCCCGCCCGCGGCTGGTGGTCTCCGACCCGGAGGTCGTGAAGGCCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACCCGCTCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGCGCCACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGTAAGAAGGTGTAGATTGTGTTAGAAAAACGTGTCATTAATCGTGATGCTTATACATCATGTTGGCAACTTATCGATCTCGATAAATTACAATGGACTAGATTCTCAAACATAAGTCCATATGTAATTATGTCAGCCTTGCTAAAATGTTCATTACTCATTTCTTATATGTAAGTTGTGTCATATGTGAACTCAGCTACTCTCCAAGGCTAGGATCCTGTATAGAACTGCCAAATTTGCTTTCTAACTTCTTTCTACAATTCTACTAACTTTGATCTAAATTTCTATGGATGTATTTACAATGGAATGGAATTTATCC]

[+] EMBL AK111151             [CGCCACTCCCCTTCTTCCGCCCGAGCTCAAGTCCCAATCCGAGAGAGTCGATCAGCGGCAGCTAGAGCAGAGCGATGGCCGCGCTGCTGGGCATCCTCCTCGCGGCCTTCCTCGCCGCCGCCGCCGTCCTTTTTGCGCTCCGCCTGCTCCACTCCTTCCTGTGGGTCCCGCGCCGCCTGGAGCGCCGGTTCCGCCGGCAGGGCATCCGGGGCCCGCCGCGCCGCCCGCTCTCCGGCAACGCCGCCGGCTACCGCGACCTGCCCGCCGCCGCCCAGTCCGCGCCGCTCGCGTCCTTCCACCACGCCGTCGTGGCCCGCGTCGCGCCGCACCACCGCGAGTGGCCCGAGCGGTACGGCCGCCCGTTCGTGTTCTGGCTCGGGCCCCGCCCGCGGCTGGTGGTCTCCGACCCGGAGGTCGTGAAGGCCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACCCGCTCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGCGCCACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGTAAGAAGGTGTAGATTGTGTTAGAAAAACGTGTCATTAATCGTGATGCTTATACATCATGTTGGCAACTTATCGATCTCGATAAATTACAATGGACTAGATTCTCAAACATAAGTCCATATGTAATTATGTCAGCCTTGCTAAAATGTTCATTACTCATTTCTTATATGTAAGTTGTGTCATATGTGAACTCAGCTACTCTCCAAGGCTAGGATCCTGTATAGAACTGCCAAATTTGCTTTCTAACTTCTTTCTACAATTCTACTAACTTTGATCTAAATTTCTATGGATGTATTTACAATGGAATGGAATTTATCC]




>consensus_3685#0
CGCCACTCCCCTTCTTCCGCCCGAGCTCAAGTCCCAATCCGAGAGAGTCGATCAGCGGCA
GCTAGAGCAGAGCGATGGCCGCGCTGCTGGGCATCCTCCTCGCGGCCTTCCTCGCCGCCG
CCGCCGTCCTTTTTGCGCTCCGCCTGCTCCACTCCTTCCTGTGGGTCCCGCGCCGCCTGG
AGCGCCGGTTCCGCCGGCAGGGCATCCGGGGCCCGCCGCGCCGCCCGCTCTCCGGCAACG
CCGCCGGCTACCGCGACCTGCCCGCCGCCGCCCAGTCCGCGCCGCTCGCGTCCTTCCACC
ACGCCGTCGTGGCCCGCGTCGCGCCGCACCACCGCGAGTGGCCCGAGCGGTACGGCCGCC
CGTTCGTGTTCTGGCTCGGGCCCCGCCCGCGGCTGGTGGTCTCCGACCCGGAGGTCGTGA
AGGCCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACC
CGCTCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGC
GCCACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGTAAGAAGGTGTA
GATTGTGTTAGAAAAACGTGTCATTAATCGTGATGCTTATACATCATGTTGGCAACTTAT
CGATCTCGATAAATTACAATGGACTAGATTCTCAAACATAAGTCCATATGTAATTATGTC
AGCCTTGCTAAAATGTTCATTACTCATTTCTTATATGTAAGTTGTGTCATATGTGAACTC
AGCTACTCTCCAAGGCTAGGATCCTGTATAGAACTGCCAAATTTGCTTTCTAACTTCTTT
CTACAATTCTACTAACTTTGATCTAAATTTCTATGGATGTATTTACAATGGAATGGAATT
TATCC

consensusID : consensus_3685#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [CCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACCCGCTCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGCGCCACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGCTTGGATTCCAGAAATAACATCTATCACCTCATCCATGCTGGATAAATGGGAACTACAAGATGAAGTACGCACTGAGTTTGAGATTGATGTAAACAAAGAATTCCACACTTTGATTGCAGATGTAATTTCCTGTGTGGCATTTGGAAGTAGCTATGAGGAAGGAAAGCGAGTTTTCCAATTGCAAGAGGAGCAGCTAAAACTTGTTATTCTTGCAATGAGGACTGTGTATATCCCTGGGCTTCAGGTTTGTCCAACTAAGAAGACCAGAGAAGGAGGTCGTAAACAGGGAATCCGGAATTCGTTGCGAAATGGATTGGGTCATTGGAGG]

[+] EMBL OS1198A              [CCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACCCGCTCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGCGCCACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGCTTGGATTCCAGAAATAACATCTATCACCTCATCCATGCTGGATAAATGGGAACTACAAGATGAAGTACGCACTGAGTTTGAGATTGATGTAAACAAAGAATTCCACACTTTGATTGCAGATGTAATTTCCTGTGTGGCATTTGGAAGTAGCTATGAGGAAGGAAAGCGAGTTTTCCAATTGCAAGAGGAGCAGCTAAAACTTGTTATTCTTGCAATGAGGACTGTGTATATCCCTGGGCTTCAGGTTTGTCCAACTAAGAAGACCAGAGAAGGAGGTCGTAAACAGGGAATCCGGAATTCGTTGCGAAATGGATTGGGTCATTGGAGG]




>consensus_3685#1
CCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACCCGC
TCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGCGCC
ACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGCTTGGATTCCAGAAA
TAACATCTATCACCTCATCCATGCTGGATAAATGGGAACTACAAGATGAAGTACGCACTG
AGTTTGAGATTGATGTAAACAAAGAATTCCACACTTTGATTGCAGATGTAATTTCCTGTG
TGGCATTTGGAAGTAGCTATGAGGAAGGAAAGCGAGTTTTCCAATTGCAAGAGGAGCAGC
TAAAACTTGTTATTCTTGCAATGAGGACTGTGTATATCCCTGGGCTTCAGGTTTGTCCAA
CTAAGAAGACCAGAGAAGGAGGTCGTAAACAGGGAATCCGGAATTCGTTGCGAAATGGAT
TGGGTCATTGGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3685#0      CGCCACTCCCCTTCTTCCGCCCGAGCTCAAGTCCCAATCCGAGAGAGTCGATCAGCGGCA 60
consensus_3685#1      ------------------------------------------------------------
                                                                                  

consensus_3685#0      GCTAGAGCAGAGCGATGGCCGCGCTGCTGGGCATCCTCCTCGCGGCCTTCCTCGCCGCCG 120
consensus_3685#1      ------------------------------------------------------------
                                                                                  

consensus_3685#0      CCGCCGTCCTTTTTGCGCTCCGCCTGCTCCACTCCTTCCTGTGGGTCCCGCGCCGCCTGG 180
consensus_3685#1      ------------------------------------------------------------
                                                                                  

consensus_3685#0      AGCGCCGGTTCCGCCGGCAGGGCATCCGGGGCCCGCCGCGCCGCCCGCTCTCCGGCAACG 240
consensus_3685#1      ------------------------------------------------------------
                                                                                  

consensus_3685#0      CCGCCGGCTACCGCGACCTGCCCGCCGCCGCCCAGTCCGCGCCGCTCGCGTCCTTCCACC 300
consensus_3685#1      ------------------------------------------------------------
                                                                                  

consensus_3685#0      ACGCCGTCGTGGCCCGCGTCGCGCCGCACCACCGCGAGTGGCCCGAGCGGTACGGCCGCC 360
consensus_3685#1      ------------------------------------------------------------
                                                                                  

consensus_3685#0      CGTTCGTGTTCTGGCTCGGGCCCCGCCCGCGGCTGGTGGTCTCCGACCCGGAGGTCGTGA 420
consensus_3685#1      ------------------------------------------------------------
                                                                                  

consensus_3685#0      AGGCCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACC 480
consensus_3685#1      ---CCGTGCTGACCGACACCACGGGGACCTTCGGAAAGGCTGGCCCCGGCGGCAACAACC 57
                         *********************************************************

consensus_3685#0      CGCTCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGC 540
consensus_3685#1      CGCTCGCGCGGCAGCTCTTCAGCGAGGGGCTGGTGGGGCTCACCGGGGAGGCGTGGGCGC 117
                      ************************************************************

consensus_3685#0      GCCACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGTAAGAA-----G 595
consensus_3685#1      GCCACCGCCGTGTGATCGCGCCGGCGTTCAACATGGAGAGGGTCAAGGCTTGGATTCCAG 177
                      ************************************************   * *     *

consensus_3685#0      GTGTAGATTGTGTTAGAAAA---ACGTGTCATTAATCGTGATGCTTATACATCATGTTGG 652
consensus_3685#1      AAATAACATCTATCACCTCATCCATGCTGGATAAATGGGAACTACAAGATGAAGTACGCA 237
                         **   * * * *    *   * *    ** *** *  *     * *     *     

consensus_3685#0      C--AACTT---ATCGATCTCGATAAATTACAATGGACTAGATTCTCAAACATAAGTCCAT 707
consensus_3685#1      CTGAGTTTGAGATTGATGTAAACAAAGAATTCCACACTTTGATTGCAGATGTAATTTCCT 297
                      *  *  **   ** *** *  * ***  *      ***    *  ** *  *** * * *

consensus_3685#0      ATGTAATTATGTCAGCCTTGCTAAAATGTTCATTACTCA-TTTCTTATATGTAAGTTGTG 766
consensus_3685#1      GTGTGGC-ATTTGGAAGTAGCTATGAGGAAGGAAAGCGAGTTTTCCAATTGCAAGAGGAG 356
                       ***    ** *     * ****  * *      *   * ***   *  ** ***  * *

consensus_3685#0      TCATATGTGAACTCAGCTACTCTCCAAGGCTAGGATCCTGTATAGAACTGCCAAATTTGC 826
consensus_3685#1      ---CAGCTAAAACTTGTTATTCTT-GCAATGAGGACTGTGTATATCCCTGGGCTTCAGGT 412
                          *  * **    * ** ***        ****   ******   ***        * 

consensus_3685#0      TT-TCTAACTTCTTTCTACAATTCTACTAACTTTGATCTAAATTTCTATGGATGTATTTA 885
consensus_3685#1      TTGTCCAACTAAGAAGACCAGAGAAGGAGGTCGTAAACAGGGAATCCGGAATTCGTTGCG 472
                      ** ** ****        **             * * *      **      *   *   

consensus_3685#0      CAATGGAATGGAATTTATCC---- 905
consensus_3685#1      AAATGGATTGGG--TCATTGGAGG 494
                       ****** ***   * **