These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [AATCGCCATCAAAGGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCCCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGTGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCCCCTCCTCCGCAGCCGCCACACCACCACCACAACCCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGTTGAGCCGCAGGCAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTTACGTGATGTCCCTTCTACCAACCTCAAATCCGGGACATGAAAGGACTTCACCGAGTTCACAGCATATGAAACCACTGCCTCCTGAATCGCTTCCTAAACGATGGAGGGGGAATGATTTCTTGTGGCATGATCCGCCCCTGGCATTAAGTGAGGAATCTGGATCTGAAAGTGAGAGAGACGAAAGGAATGGAAATTCTAATAACGAGCAGATCCTGCAGTCACACAGGCCCATCGATAACTCAAATGGAAATGAAGAAACATCAACATCAGACTGCACAGACTCTCTTTATTATTTAACTGAAAAGTCTACATTTATATCTCTAAAATTGTTTGGATTCTTTCAATCTTCTCTCCCTGGGACCTTAAAGGG] [+] EMBL CB629873 [AATCGCCATCAAAGGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCCCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGTGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCCCCTCCTCCGCAGCCGCCACACCACCACCACAACCCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGTTGAGCCGCAGGCAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTTACGTGATGTCCCTTCTACCAACCTCAAATCCGGGACATGAAAGGACTTCACCGAGTTCACAGCATATGAAACCACTGCCTCCTGAATCGCTTCCTAAACGATGGAGGGGGAATGATTTCTTGTGGCATGATCCGCCCCTGGCATTAAGTGAGGAATCTGGATCTGAAAGTGAGAGAGACGAAAGGAATGGAAATTCTAATAACGAGCAGATCCTGCAGTCACACAGGCCCATCGATAACTCAAATGGAAATGAAGAAACATCAACATCAGACTGCACAGACTCTCTTTATTATTTAACTGAAAAGTCTACATTTATATCTCTAAAATTGTTTGGATTCTTTCAATCTTCTCTCCCTGGGACCTTAAAGGG] consensusID : consensus_3693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [ATGCTTCCACCACGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCGCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGAGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCACCTCCTCCGCAGCCGCCACACCAGAACCACAACTCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGGAGAGCCGCAGGGAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTGTACG] [+] EMBL CB629875 [ATGCTTCCACCACGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCGCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGAGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCACCTCCTCCGCAGCCGCCACACCAGAACCACAACTCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGGAGAGCCGCAGGGAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTGTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3693#0 -AATCGCCATCAAAGGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCC 59 consensus_3693#1 ATGCTTCCACCA--CGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCC 58 *** ** ********************************************* consensus_3693#0 TCCGCCGCCGCCACCGCCGCCCCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAG 119 consensus_3693#1 TCCGCCGCCGCCACCGCCGCCGCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAG 118 ********************* ************************************** consensus_3693#0 GGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGTGGCGGACAGGCTCGC 179 consensus_3693#1 GGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGAGGCGGACAGGCTCGC 178 ******************************************** *************** consensus_3693#0 CCGCCTCCTCGCCGACTCCCCCGCCTCCCCCTCCTCCGCAGCCGCCACACCACCACCACA 239 consensus_3693#1 CCGCCTCCTCGCCGACTCCCCCGCCTCCACCTCCTCCGCAGCCGCCACACCAGAACCACA 238 **************************** *********************** ****** consensus_3693#0 ACCCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGTTGAGCCGCAGGCAACGCCTTTTCC 299 consensus_3693#1 ACTCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGGAGAGCCGCAGGGAACGCCTTTTCC 298 ** ******************************** ********** ************ consensus_3693#0 AGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCT-TACGTGATGTCCCTTC 358 consensus_3693#1 AGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTGTACG------------ 346 ******************************************* **** consensus_3693#0 TACCAACCTCAAATCCGGGACATGAAAGGACTTCACCGAGTTCACAGCATATGAAACCAC 418 consensus_3693#1 ------------------------------------------------------------ consensus_3693#0 TGCCTCCTGAATCGCTTCCTAAACGATGGAGGGGGAATGATTTCTTGTGGCATGATCCGC 478 consensus_3693#1 ------------------------------------------------------------ consensus_3693#0 CCCTGGCATTAAGTGAGGAATCTGGATCTGAAAGTGAGAGAGACGAAAGGAATGGAAATT 538 consensus_3693#1 ------------------------------------------------------------ consensus_3693#0 CTAATAACGAGCAGATCCTGCAGTCACACAGGCCCATCGATAACTCAAATGGAAATGAAG 598 consensus_3693#1 ------------------------------------------------------------ consensus_3693#0 AAACATCAACATCAGACTGCACAGACTCTCTTTATTATTTAACTGAAAAGTCTACATTTA 658 consensus_3693#1 ------------------------------------------------------------ consensus_3693#0 TATCTCTAAAATTGTTTGGATTCTTTCAATCTTCTCTCCCTGGGACCTTAAAGGG 713 consensus_3693#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||