cluster # 3696

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Oryza sativa
cluster # 3696 cluster # 3696 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3696#0 length = 204 sequences # 1

consensus_3696#1 length = 179 sequences # 1

consensusID : consensus_3696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGAAAAATTTTTTCCTTTTTGTTAAAAACCAAAGCCCTTTAAAAGGGCCCTAACCCAACCGGAAAAAAAAAATTTTTAGCCTATTATATTTTGGTATTTCATCAACATAACCCCAAACAAAACTGCCTTCTTTTTTTTTTGGCC]

[+] EMBL CF302529             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGAAAAATTTTTTCCTTTTTGTTAAAAACCAAAGCCCTTTAAAAGGGCCCTAACCCAACCGGAAAAAAAAAATTTTTAGCCTATTATATTTTGGTATTTCATCAACATAACCCCAAACAAAACTGCCTTCTTTTTTTTTTGGCC]




>consensus_3696#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGG
GGAAAAATTTTTTCCTTTTTGTTAAAAACCAAAGCCCTTTAAAAGGGCCCTAACCCAACC
GGAAAAAAAAAATTTTTAGCCTATTATATTTTGGTATTTCATCAACATAACCCCAAACAA
AACTGCCTTCTTTTTTTTTTGGCC

consensusID : consensus_3696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAAAAAATTTTTAGCCTATTATATTTTGGTATATCATCAACATAGCCCCAAACAAAACTGGGTTCTTTTTTTTTTGGGCGCAATCCCCCCGCGCGAAGCTTGGTCTTAACTTAATTGCCCCCAAAATCCTTGCAAC]

[+] EMBL CF302904             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAAAAAATTTTTAGCCTATTATATTTTGGTATATCATCAACATAGCCCCAAACAAAACTGGGTTCTTTTTTTTTTGGGCGCAATCCCCCCGCGCGAAGCTTGGTCTTAACTTAATTGCCCCCAAAATCCTTGCAAC]




>consensus_3696#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAAAAAAATTTTTAGCCT
ATTATATTTTGGTATATCATCAACATAGCCCCAAACAAAACTGGGTTCTTTTTTTTTTGG
GCGCAATCCCCCCGCGCGAAGCTTGGTCTTAACTTAATTGCCCCCAAAATCCTTGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3696#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGG 60
consensus_3696#1      --------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAA--- 43
                                    ****************************************      

consensus_3696#0      GGAAAAATTTTTTCCTTTTTGTTAAAAACCAAAGCCCTTTAAAAGGGCCCTAACCCAACC 120
consensus_3696#1      AAAAAAATTTTTAGCCTATTAT--ATTTTGGTATATCATCAACATAGCCCCAAACAAAAC 101
                        **********  * * ** *  *       *   * * ** *  **** ** * ** *

consensus_3696#0      GGAAAAAAAAAATTTTTAGCCTATTATATTTTGGTATTTCATCAACATAACCCCAAACAA 180
consensus_3696#1      TGGGTTCTTTTTTTTTTGGGC-GCAATCCCCCCG-----CGCGAAGCTTGGTCTTAACTT 155
                       *          ***** * *    **      *     *   **  *    *  ***  

consensus_3696#0      AACTGCCTTCTTTTTTTTTTGGCC 204
consensus_3696#1      AATTGCCCCCAAAATCCTTGCAAC 179
                      ** ****  *    *  **    *