These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [GCGCCCTAAAGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGCCGAGCACGGGGCGCGACGCGGAGGGGACCCGCGGCGACTTCCCCGACGGCTTCNTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGGTTTCACAGAAAACAAAGAACGTATCTTAGATGGAAGCAGTGGAGAAGTTGCAGATGATCCTTACCATCGATACA] [+] EMBL CB630142 [GCGCCCTAAAGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGCCGAGCACGGGGCGCGACGCGGAGGGGACCCGCGGCGACTTCCCCGACGGCTTCNTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGGTTTCACAGAAAACAAAGAACGTATCTTAGATGGAAGCAGTGGAGAAGTTGCAGATGATCCTTACCATCGATACA] consensusID : consensus_3697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [GCGACTCACCTGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACGGGAGGTGACCCGCGGCGACTTCCCCGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGACGTATCTTAGATGGGAGCAGTTGAGAAGTTGCANTTGATC] [+] EMBL OSS4135A [GCGACTCACCTGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACGGGAGGTGACCCGCGGCGACTTCCCCGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGACGTATCTTAGATGGGAGCAGTTGAGAAGTTGCANTTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3697#0 GCGCCCTAAA-GCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGC 59 consensus_3697#1 GCGACTCACCTGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGC 60 *** * * ************************************************* consensus_3697#0 CGCCGCCGGGGGGAATGCCGAGCACGGGGCGCGACGCGGAGGGGACCCGCGGCGACTTCC 119 consensus_3697#1 CGCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACG-GGAGGTGACCCGCGGCGACTTCC 119 ***************** ***************** ***** ***************** consensus_3697#0 CCGACGGCTTCNTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGG 179 consensus_3697#1 CCGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGG 179 *********** ************************************************ consensus_3697#0 AGGGAGGCAAAGGAGATAACATATGGGATGGTTTCACAGAAAACAAAGAACGTATCTTAG 239 consensus_3697#1 AGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGA-CGTATCTTAG 238 ****************************** ****************** ********** consensus_3697#0 ATGGAAGCAGTGGAGAAGTTGCAGATGATCCTTACCATCGATACA 284 consensus_3697#1 ATGGGAGCAGTTGAGAAGTTGCANTTGATC--------------- 268 **** ****** *********** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||