These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [CTATCAGTCGTGCTGTTCTTCTTACTGGCATGCCACAGGGGGAGATCTTTAAATCCTCTTATGCTTCTGGCTAGCTAGATCAGAAGAATCACTTTAATGCAGGTGAGGTGAAGAACACAATTAGATAGCACTTCCCATTGAGAAAGTATGGCAGAAGCTGCAGTAGTCCAGGCCCTCATCAAGATTGGCACGACTTTTGGAGACGCGGCATTGCAATCGCTCAAAGACATCATAAAGAAAGAAGTAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATCCATTGGGAGGGAACTGGACATGATCAATAGCTTCCTTATGCAAGTGCGGGCGAAGATCCACAGCACTGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTTGAGGACATAATAGATGAGTACTCCTACAATGTTGCTCTGCTGCAGGAGGAAAGCTATTTAAGTAGAATGATGCGTGCGACCTACTATGGTGTAACTTTCCATGGCATTGCTACTGGACTGAAAGATGTACAAAATGATATCAAGCAATTGTCGGATACTAAGACAAAATTTGCAGAGTTCTTCAATGAGTTACATAGCAACACTGGTAGTAACACACAATCTCATCTATCACGTGATAGATCCCTCCATACAGTTAAAGAAGGTATTGTTGGTATGACAGAAGAGGTAGATTTACTGAATTCATGGTTATCACCCAATGATCTCACTAGAGTAGTTTTATCTGTGTGGGGTCTGTTTGGGCTGGGGAAAACAACTCTGGTGAGAAAGGTGTATG] [+] EMBL CB646162 [CTATCAGTCGTGCTGTTCTTCTTACTGGCATGCCACAGGGGGAGATCTTTAAATCCTCTTATGCTTCTGGCTAGCTAGATCAGAAGAATCACTTTAATGCAGGTGAGGTGAAGAACACAATTAGATAGCACTTCCCATTGAGAAAGTATGGCAGAAGCTGCAGTAGTCCAGGCCCTCATCAAGATTGGCACGACTTTTGGAGACGCGGCATTGCAATCGCTCAAAGACATCATAAAGAAAGAAGTAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATCCATTGGGAGGGAACTGGACATGATCAATAGCTTCCTTATGCAAGTGCGGGCGAAGATCCACAGCACTGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTTGAGGACATAATAGATGAGTACTCCTACAATGTTGCTCTGCTGCAGGAGGAAAGCTATTTAAGTAGAATGATGCGTGCGACCTACTATGGTGTAACTTTCCATGGCATTGCTACTGGACTGAAAGATGTACAAAATGATATCAAGCAATTGTCGGATACTAAGACAAAATTTGCAGAGTTCTTCAATGAGTTACATAGCAACACTGGTAGTAACACACAATCTCATCTATCACGTGATAGATCCCTCCATACAGTTAAAGAAGGTATTGTTGGTATGACAGAAGAGGTAGATTTACTGAATTCATGGTTATCACCCAATGATCTCACTAGAGTAGTTTTATCTGTGTGGGGTCTGTTTGGGCTGGGGAAAACAACTCTGGTGAGAAAGGTGTATG] consensusID : consensus_3710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [TTCCCTCAGTCGTGCTGTTCTTCAGCTCTTCAGCATGTGTATATGATTCATATCATTTCTCTTGCTCTACTGAAGCCTTCACCCGTCGTGCTGTACTTGCTGGCATGTTACAGGTGTAGTGAAGAACAAAAAAGCTAGTGCGCCCCACAAGGATACGGCAAAGTATGGCGGAAGCTGCAGTAGTCCAGGCCCTCATTAAGATTGGATCTGCTTTTGGAGAAACAGCACTGCCATTACTCCAAGACTTCATAAAGAAAGAAGCAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATGCATTCGGGGGGAATTGGACATGATTAGTAGCTTCCTTCTGCAAGTGCGGTCGAAGATCCACAGCACCGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTCGAGGACATAATAGATGAGTACACCCACAATGTTGCTCTGTTGCAGGACCAAAGTTATTTGATTAGAAAGATGCGTGAGGCCTACAATGTCACAACTTTCCATGCCATTGCTACTGGACTGAAAGATGTAAGTAATGAGATCAAGCAGTTGTCAGAAATGAAGACAAAATATGCAGAATACTTCGGTGAGTTACTTAGCAACACTAGTGCTAATACTCAAGCTCATCTCTCCCGTGATGGCTCCCTCCATACGGTTAAAGAAGGCATTGTAGGCATGACAGTAGAGATGGATTTACTGAATTCATGGTTAGCACCCAATGATCTCAGTAGAGTAGTGTTATCTGTGTGGGGTCTGTTTGGATTGGGGAAAA] [+] EMBL CB630521 [TTCCCTCAGTCGTGCTGTTCTTCAGCTCTTCAGCATGTGTATATGATTCATATCATTTCTCTTGCTCTACTGAAGCCTTCACCCGTCGTGCTGTACTTGCTGGCATGTTACAGGTGTAGTGAAGAACAAAAAAGCTAGTGCGCCCCACAAGGATACGGCAAAGTATGGCGGAAGCTGCAGTAGTCCAGGCCCTCATTAAGATTGGATCTGCTTTTGGAGAAACAGCACTGCCATTACTCCAAGACTTCATAAAGAAAGAAGCAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATGCATTCGGGGGGAATTGGACATGATTAGTAGCTTCCTTCTGCAAGTGCGGTCGAAGATCCACAGCACCGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCATGTCGAGGACATAATAGATGAGTACACCCACAATGTTGCTCTGTTGCAGGACCAAAGTTATTTGATTAGAAAGATGCGTGAGGCCTACAATGTCACAACTTTCCATGCCATTGCTACTGGACTGAAAGATGTAAGTAATGAGATCAAGCAGTTGTCAGAAATGAAGACAAAATATGCAGAATACTTCGGTGAGTTACTTAGCAACACTAGTGCTAATACTCAAGCTCATCTCTCCCGTGATGGCTCCCTCCATACGGTTAAAGAAGGCATTGTAGGCATGACAGTAGAGATGGATTTACTGAATTCATGGTTAGCACCCAATGATCTCAGTAGAGTAGTGTTATCTGTGTGGGGTCTGTTTGGATTGGGGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3710#0 --CTATCAGTCGTGCTGTTCTTC---TTACTGGCATGC-CACAGGGGG------AGATCT 48 consensus_3710#1 TTCCCTCAGTCGTGCTGTTCTTCAGCTCTTCAGCATGTGTATATGATTCATATCATTTCT 60 * ****************** * ***** * * * * *** consensus_3710#0 TTAAATCCTCTTATGCTTCTGGCTAGCTAGATCAGAAGAATCACTTTAATGCAGGTGAGG 108 consensus_3710#1 CTTGCTCTACTGAAGCCT-TCACCCGTCGTGCTGTACTTGCTGGCATGTTACAGGTGTAG 119 * ** ** * ** * * * * * * * ****** * consensus_3710#0 TGAAGAACACAATTAGATAGCACTTCCCATTGAGA-------AAGTATGGCAGAAGCTGC 161 consensus_3710#1 TGAAGAACAAAAA-AGCTAGTGCGCCCCACAAGGATACGGCAAAGTATGGCGGAAGCTGC 178 ********* ** ** *** * **** ** ********* ******** consensus_3710#0 AGTAGTCCAGGCCCTCATCAAGATTGGCACGACTTTTGGAGACGCGGCATTGCAATCGCT 221 consensus_3710#1 AGTAGTCCAGGCCCTCATTAAGATTGGATCTGCTTTTGGAGAAACAGCACTGCCATTACT 238 ****************** ******** * ********** * *** *** ** ** consensus_3710#0 CAAAGACATCATAAAGAAAGAAGTAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATC 281 consensus_3710#1 CCAAGACTTCATAAAGAAAGAAGCAGCTCTGTTACAGGAACTACCAGAGCTCGCAAAATG 298 * ***** *************** *********************************** consensus_3710#0 CATTGGGAGGGAACTGGACATGATCAATAGCTTCCTTATGCAAGTGCGGGCGAAGATCCA 341 consensus_3710#1 CATTCGGGGGGAATTGGACATGATTAGTAGCTTCCTTCTGCAAGTGCGGTCGAAGATCCA 358 **** ** ***** ********** * ********** *********** ********** consensus_3710#0 CAGCACTGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCA 401 consensus_3710#1 CAGCACCGACAATGAAGTTCTGAAACGCTGGGTGGTGAGAGTACGCCAGGTGGCCTACCA 418 ****** ***************************************************** consensus_3710#0 TGTTGAGGACATAATAGATGAGTACTCCTACAATGTTGCTCTGCTGCAGGAGGAAAGCTA 461 consensus_3710#1 TGTCGAGGACATAATAGATGAGTACACCCACAATGTTGCTCTGTTGCAGGACCAAAGTTA 478 *** ********************* ** ************** ******* **** ** consensus_3710#0 TTTAAGTAGAATGATGCGTGCGACCTACTATGGTGTAACTTTCCATGGCATTGCTACTGG 521 consensus_3710#1 TTTGATTAGAAAGATGCGTGAGGCCTACAATGTCACAACTTTCCATGCCATTGCTACTGG 538 *** * ***** ******** * ***** *** *********** ************ consensus_3710#0 ACTGAAAGATGTACAAAATGATATCAAGCAATTGTCGGATACTAAGACAAAATTTGCAGA 581 consensus_3710#1 ACTGAAAGATGTAAGTAATGAGATCAAGCAGTTGTCAGAAATGAAGACAAAATATGCAGA 598 ************* ***** ******** ***** ** * ********** ****** consensus_3710#0 GTTCTTCAATGAGTTACATAGCAACACTGGTAGTAACACACAATCTCATCTATCACGTGA 641 consensus_3710#1 ATACTTCGGTGAGTTACTTAGCAACACTAGTGCTAATACTCAAGCTCATCTCTCCCGTGA 658 * **** ******** ********** ** *** ** *** ******* ** ***** consensus_3710#0 TAGATCCCTCCATACAGTTAAAGAAGGTATTGTTGGTATGACAGAAGAGGTAGATTTACT 701 consensus_3710#1 TGGCTCCCTCCATACGGTTAAAGAAGGCATTGTAGGCATGACAGTAGAGATGGATTTACT 718 * * *********** *********** ***** ** ******* **** * ******** consensus_3710#0 GAATTCATGGTTATCACCCAATGATCTCACTAGAGTAGTTTTATCTGTGTGGGGTCTGTT 761 consensus_3710#1 GAATTCATGGTTAGCACCCAATGATCTCAGTAGAGTAGTGTTATCTGTGTGGGGTCTGTT 778 ************* *************** ********* ******************** consensus_3710#0 TGGGCTGGGGAAAACAACTCTGGTGAGAAAGGTGTATG 799 consensus_3710#1 TGGATTGGGGAAAA------------------------ 792 *** ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||