cluster # 3715

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3715 cluster # 3715 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3715#0 length = 308 sequences # 1

consensus_3715#1 length = 279 sequences # 1

consensusID : consensus_3715#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGTAACAATTTAACAACCCGAGGGTGCAACCCTCACCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATCAGAAATCGACAGGGCAACTACCACCGGTGCCATGGACTCGCTTCCACCAAAACCAAAAAAAAATCACCCAACCCCTTCCCTTAAACGCCTAAAAACTGGGGAACTTGGGGACGGCCTTGGGGCCCTCGGAAAC]

[+] EMBL CF313967             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGTAACAATTTAACAACCCGAGGGTGCAACCCTCACCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATCAGAAATCGACAGGGCAACTACCACCGGTGCCATGGACTCGCTTCCACCAAAACCAAAAAAAAATCACCCAACCCCTTCCCTTAAACGCCTAAAAACTGGGGAACTTGGGGACGGCCTTGGGGCCCTCGGAAAC]




>consensus_3715#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGTAACAATTTAACAACCCG
AGGGTGCAACCCTCACCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATT
TTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATCAGAAA
TCGACAGGGCAACTACCACCGGTGCCATGGACTCGCTTCCACCAAAACCAAAAAAAAATC
ACCCAACCCCTTCCCTTAAACGCCTAAAAACTGGGGAACTTGGGGACGGCCTTGGGGCCC
TCGGAAAC

consensusID : consensus_3715#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATTTAACAACCCAAGGGTGCAACCCTCCCCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATTCGAAATCGACGGGGGAACTTCCCCCGGTGCCATGGACTCCCTTCAACAAAAACCAAAAAAAAATTCCCCAACCCCTTCTACCCTTAAGCCCCTAAAAACTGGGGAACTTGGGGACGG]

[+] EMBL CF302683             [TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATTTAACAACCCAAGGGTGCAACCCTCCCCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATTCGAAATCGACGGGGGAACTTCCCCCGGTGCCATGGACTCCCTTCAACAAAAACCAAAAAAAAATTCCCCAACCCCTTCTACCCTTAAGCCCCTAAAAACTGGGGAACTTGGGGACGG]




>consensus_3715#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATTTAACAACCCAAGGGTGCAACCCT
CCCCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATTTTTACAGTAATCA
GCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATTCGAAATCGACGGGGGAAC
TTCCCCCGGTGCCATGGACTCCCTTCAACAAAAACCAAAAAAAAATTCCCCAACCCCTTC
TACCCTTAAGCCCCTAAAAACTGGGGAACTTGGGGACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3715#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAGTAACAATTTAACAACCCG 60
consensus_3715#1      -------------TTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATTTAACAACCCA 47
                                   ************************  *** **************** 

consensus_3715#0      AGGGTGCAACCCTCACCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATT 120
consensus_3715#1      AGGGTGCAACCCTCCCCCTTAATTTTAAAAACAAAACTCAACGGGCCCAACCAAAAAATT 107
                      ************** *********************************************

consensus_3715#0      TTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATCAGAAA 180
consensus_3715#1      TTTACAGTAATCAGCAAGCCCTTAACAGGAACCCTTTACCCAAAAAAAAAAAATTCGAAA 167
                      ******************************************************  ****

consensus_3715#0      TCGACAGGGCAACTACCACCGGTGCCATGGACTCGCTTCCACCAAAACCAAAAAAAAATC 240
consensus_3715#1      TCGACGGGGGAACTTCCCCCGGTGCCATGGACTCCCTTCAACAAAAACCAAAAAAAAATT 227
                      ***** *** **** ** **************** **** ** **************** 

consensus_3715#0      ACCCAACCCCTTC---CCTTAAACGCCTAAAAACTGGGGAACTTGGGGACGGCCTTGGGG 297
consensus_3715#1      CCCCAACCCCTTCTACCCTTAAGCCCCTAAAAACTGGGGAACTTGGGGACGG-------- 279
                       ************   ****** * ***************************        

consensus_3715#0      CCCTCGGAAAC 308
consensus_3715#1      -----------