These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CTTGATGAAATCAAAATCAGAGAATCATTCCCAGTTAAGAACATTTGGAACAAAAAGAGAGGNTGATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCAACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTCTTGATGATATTGATGATGAGCTCGACGAAGACAACTAGTTTGATGTCAAGCAGCGGTCTAGGAAACGATGACCTAATTACTTTCTGATCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCTCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAAAAAAAAAAAAAAAAAAA] [+] EMBL C97371 [CTTGATGAAATCAAAATCAGAGAATCATTCCCAGTTAAGAACATTTGGAACAAAAAGAGAGGNTGATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCAACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTCTTGATGATATTGATGATGAGCTCGACGAAGACAACTAGTTTGATGTCAAGCAGCGGTCTAGGAAACGATGACCTAATTACTTTCTGATCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCTCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAAAAAAAAAAAAAAAAAAA] consensusID : consensus_372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [GCTTAACCCAAAAAGCCCAGAGGGTATCAAGAAAGAAGNTTACCAGTCAATNCTTGATGATATTGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANCGGTCTAGGAAACGATGACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAATGGCGATGAGTATTTTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C98684 [GCTTAACCCAAAAAGCCCAGAGGGTATCAAGAAAGAAGNTTACCAGTCAATNCTTGATGATATTGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANCGGTCTAGGAAACGATGACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAATGGCGATGAGTATTTTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_372#0 CTTGATGAAATCAAAATCAGAGAATCATTCCCAGTTAAGAACATTTGGAACAAAAAGAGA 60 consensus_372#1 ------------------------------------------------------------ consensus_372#0 GGNTGATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCA 120 consensus_372#1 -------------------------------------------------------GCTTA 5 * * consensus_372#0 ACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTCTTGATGATAT 180 consensus_372#1 ACCCAAAAAGCCCAGA-GGGTATCAAGAAAGAAGNTTA-CCAGTCAATNCTTGATGATAT 63 ** ******** **** ***************** *** ********* *********** consensus_372#0 TGATGATGAGCTCGACGAAGACAACTAGTTTGATGTCAAGCAGCGGTCTAGGAAACGATG 240 consensus_372#1 TGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANCGGTCTAGGAAACGATG 123 *********** ****************************** ***************** consensus_372#0 ACCTAATTACTTTCTGATCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACA 300 consensus_372#1 ACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACA 183 **************** ******************************************* consensus_372#0 TAGCTGGCGTAATCTGTAGCTCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACAC 360 consensus_372#1 TAGCTGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACAC 243 ******************** *************************************** consensus_372#0 TTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAA------- 413 consensus_372#1 TTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAATGGCGAT 303 ***************************************************** consensus_372#0 ---------------AAAAAAAAAAAAAAAAA------------------------- 430 consensus_372#1 GAGTATTTTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 360 ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||