cluster # 372

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Oryza sativa
cluster # 372 cluster # 372 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_372#0 length = 430 sequences # 1

consensus_372#1 length = 360 sequences # 1

consensusID : consensus_372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [CTTGATGAAATCAAAATCAGAGAATCATTCCCAGTTAAGAACATTTGGAACAAAAAGAGAGGNTGATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCAACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTCTTGATGATATTGATGATGAGCTCGACGAAGACAACTAGTTTGATGTCAAGCAGCGGTCTAGGAAACGATGACCTAATTACTTTCTGATCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCTCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAAAAAAAAAAAAAAAAAAA]

[+] EMBL C97371               [CTTGATGAAATCAAAATCAGAGAATCATTCCCAGTTAAGAACATTTGGAACAAAAAGAGAGGNTGATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCAACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTCTTGATGATATTGATGATGAGCTCGACGAAGACAACTAGTTTGATGTCAAGCAGCGGTCTAGGAAACGATGACCTAATTACTTTCTGATCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCTCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAAAAAAAAAAAAAAAAAAA]




>consensus_372#0
CTTGATGAAATCAAAATCAGAGAATCATTCCCAGTTAAGAACATTTGGAACAAAAAGAGA
GGNTGATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCA
ACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTCTTGATGATAT
TGATGATGAGCTCGACGAAGACAACTAGTTTGATGTCAAGCAGCGGTCTAGGAAACGATG
ACCTAATTACTTTCTGATCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACA
TAGCTGGCGTAATCTGTAGCTCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACAC
TTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAAAAAAAAA
AAAAAAAAAA

consensusID : consensus_372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence

                              [GCTTAACCCAAAAAGCCCAGAGGGTATCAAGAAAGAAGNTTACCAGTCAATNCTTGATGATATTGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANCGGTCTAGGAAACGATGACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAATGGCGATGAGTATTTTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98684               [GCTTAACCCAAAAAGCCCAGAGGGTATCAAGAAAGAAGNTTACCAGTCAATNCTTGATGATATTGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANCGGTCTAGGAAACGATGACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACATAGCTGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAATGGCGATGAGTATTTTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_372#1
GCTTAACCCAAAAAGCCCAGAGGGTATCAAGAAAGAAGNTTACCAGTCAATNCTTGATGA
TATTGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANCGGTCTAGGAAACG
ATGACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGT
ACATAGCTGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAA
CACTTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAATGGC
GATGAGTATTTTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_372#0      CTTGATGAAATCAAAATCAGAGAATCATTCCCAGTTAAGAACATTTGGAACAAAAAGAGA 60
consensus_372#1      ------------------------------------------------------------
                                                                                 

consensus_372#0      GGNTGATGTCAGATACAAAACAGGTGTCATGGGTGTAAAGCAAGCAGAGCCTCGTCTTCA 120
consensus_372#1      -------------------------------------------------------GCTTA 5
                                                                              * *

consensus_372#0      ACTCAAAAAGCACAGAAGGGTATCAAGAAAGAAGATTAACCAGTCAATTCTTGATGATAT 180
consensus_372#1      ACCCAAAAAGCCCAGA-GGGTATCAAGAAAGAAGNTTA-CCAGTCAATNCTTGATGATAT 63
                     ** ******** **** ***************** *** ********* ***********

consensus_372#0      TGATGATGAGCTCGACGAAGACAACTAGTTTGATGTCAAGCAGCGGTCTAGGAAACGATG 240
consensus_372#1      TGATGATGAGCNCGACGAAGACAACTAGTTTGATGTCAAGCANCGGTCTAGGAAACGATG 123
                     *********** ****************************** *****************

consensus_372#0      ACCTAATTACTTTCTGATCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACA 300
consensus_372#1      ACCTAATTACTTTCTGNTCTAACGGCTACAAACATTGGGAACCTATGTATGTGTTGTACA 183
                     **************** *******************************************

consensus_372#0      TAGCTGGCGTAATCTGTAGCTCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACAC 360
consensus_372#1      TAGCTGGCGTAATCTGTAGCNCCACCATGCCCTTTAACTTGTATGCTGAACAGTGAACAC 243
                     ******************** ***************************************

consensus_372#0      TTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAA------- 413
consensus_372#1      TTGCAAATAGAAATCTGTAGGCAAAGGAAACTGTAGAAATATTTTCCTGTTAATGGCGAT 303
                     *****************************************************       

consensus_372#0      ---------------AAAAAAAAAAAAAAAAA------------------------- 430
consensus_372#1      GAGTATTTTGTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 360
                                    *****************