These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1340 fasta sequence [GAACAGTGCCAGAAAGCATCTACTCATGCAGAAATCTAAGTGCATTGCAGCTGTCTAACAATAGCTTCCATGGCCAGCTCTCGGAGAAAATCCGCAATCTGAAGTGCCTCTCATTTGTATCACTTGTTGACATCTCTCTTACAAATATCACAGGTTCACTTCAGATACTTCAGAGCTGCAGGAACCTGACCACCTTGCTTATTGGGTACAACTTCATGCAAGAGACCATGCCAGAGGATGACGAGATTTATGGTTTTGAGAATCTTCGGATTTTTTCCCTGAACGATTGTTCATTGTCTGGAAAAATACCTAAATGGTTATCAAAGCTCACAAATCTGGAGATGCTATCTTTATATAACAATCAACTAAACGGAGCAATACCTGACTGGATCAGCAGCCTAAACTTCTTGTTCCATATAGACATTTCAAACAACAGCCTTTCAGGGGAAATTCCATCAGCCTTAGTTGAGATGCCAATGCTAAAATCAGATAATGTTCCACCAAAGGTCTTTGAGCTGCCTATCTGTACAGGTTATGCACTTCAATACCGAATAAACAGTGCATTCCCTAAAGTGCTGAATCTAGGCATCAATAATTTCACTGGCATCATCCCGAATGAGATTGGTCAGTTGAAGGCACTCCAGTTACTCAATTTGAGTTCCAACAGATTGTCTGGAGAGATACCAGAATCAATCTACAAGCTCACAAACCTACAGGTGCTTGATTTGTCCAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAACAAACTTCACTTCCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAAGTTGTGTGGTCCTATGCTTGCACGCCATTGTGGTTTAGCACAAACACCATTTGTCTCCACAAAACAAAATGCTGACAAGGTTGTATCATCATTTGTCTTTATGATTTCCTTTGGTGCATTCTTTGCTGTAGGGGTGTTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTACTTCAGTTAGGTCGCAAACCAACCAAGACCTGTGACACAATGATAGCTGTCACTATCTCCGGCCATGGTCTGATGATTTCTTATAGCCCAAGCTTAAGCCAGATCAATCAACAGCAATAACTGAATGCAGCATACCTGTCATTCAAGTACATAAGCAGAGAGATTAAATTGGAAGGTGTTTGTGTGTTAAGAGAAGCCACCTTTTTGCAGATATAAAATTTACATAATGCACTTATGTAAGACTTTTGAACGGAAGCGCCAAAGTTGTGTCAATAAATCA] [+] EMBL AK100447 [GAACAGTGCCAGAAAGCATCTACTCATGCAGAAATCTAAGTGCATTGCAGCTGTCTAACAATAGCTTCCATGGCCAGCTCTCGGAGAAAATCCGCAATCTGAAGTGCCTCTCATTTGTATCACTTGTTGACATCTCTCTTACAAATATCACAGGTTCACTTCAGATACTTCAGAGCTGCAGGAACCTGACCACCTTGCTTATTGGGTACAACTTCATGCAAGAGACCATGCCAGAGGATGACGAGATTTATGGTTTTGAGAATCTTCGGATTTTTTCCCTGAACGATTGTTCATTGTCTGGAAAAATACCTAAATGGTTATCAAAGCTCACAAATCTGGAGATGCTATCTTTATATAACAATCAACTAAACGGAGCAATACCTGACTGGATCAGCAGCCTAAACTTCTTGTTCCATATAGACATTTCAAACAACAGCCTTTCAGGGGAAATTCCATCAGCCTTAGTTGAGATGCCAATGCTAAAATCAGATAATGTTCCACCAAAGGTCTTTGAGCTGCCTATCTGTACAGGTTATGCACTTCAATACCGAATAAACAGTGCATTCCCTAAAGTGCTGAATCTAGGCATCAATAATTTCACTGGCATCATCCCGAATGAGATTGGTCAGTTGAAGGCACTCCAGTTACTCAATTTGAGTTCCAACAGATTGTCTGGAGAGATACCAGAATCAATCTACAAGCTCACAAACCTACAGGTGCTTGATTTGTCCAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAACAAACTTCACTTCCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAAGTTGTGTGGTCCTATGCTTGCACGCCATTGTGGTTTAGCACAAACACCATTTGTCTCCACAAAACAAAATGCTGACAAGGTTGTATCATCATTTGTCTTTATGATTTCCTTTGGTGCATTCTTTGCTGTAGGGGTGTTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTACTTCAGTTAGGTCGCAAACCAACCAAGACCTGTGACACAATGATAGCTGTCACTATCTCCGGCCATGGTCTGATGATTTCTTATAGCCCAAGCTTAAGCCAGATCAATCAACAGCAATAACTGAATGCAGCATACCTGTCATTCAAGTACATAAGCAGAGAGATTAAATTGGAAGGTGTTTGTGTGTTAAGAGAAGCCACCTTTTTGCAGATATAAAATTTACATAATGCACTTATGTAAGACTTTTGAACGGAAGCGCCAAAGTTGTGTCAATAAATCA] consensusID : consensus_3720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 805 fasta sequence [ATTGGTCAATTGAAGGCACTTCTATTACTCAATTTGAGCTTCAACAGATTATCTGGAGACATACCAGAATCAATCTACAACCTCACAAACCTGCAGGTGCTTGATTTGTCAAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAATAAACTGCACTTTCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAGGTTGTGTGGTCCTATGCTCGCACACCATTGTGGTTTAGCAGAAACACCGTTTGTCTCCACAAAACAAACTAATGACAAGATTGTATCACCATTTGTCTTTATGATTTCCTTTGGCGCATTCTTTTGTGTAGGGGTGCTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTGCTTCAGTTTTGATCATATTTGGTCCAGTCATACCAATATGTATCAAATGAAGCATATCAAACCAACCCAGACCTGTGACAAAATGACAGCCGTCACTATCTCCCGCCATGGCCTGATGATTTCTTGTAGTCCAAGCTTCAGTGAAATCAATCAACAGCTCCAATTGAACTGTGCACCAGTTATTCAAGTACACAGAGAGATAATTTGGAAGGTTTTTATGTGTTAAGAGAAGCCAATTTGTTGCAGATGTAAAATTTACATAATATAATTATGTAAGACTGTTGAACTGAAGAAGTTAACTGTGTCAGTAACTCAATCTAGTCCAAACCCACTGTAATTTTATTTTCAGTATTTACATTAGTACG] [-] EMBL CB630989 [ATTGGTCAATTGAAGGCACTTCTATTACTCAATTTGAGCTTCAACAGATTATCTGGAGACATACCAGAATCAATCTACAACCTCACAAACCTGCAGGTGCTTGATTTGTCAAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAATAAACTGCACTTTCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGACAGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAGGTTGTGTGGTCCTATGCTCGCACACCATTGTGGTTTAGCAGAAACACCGTTTGTCTCCACAAAACAAACTAATGACAAGATTGTATCACCATTTGTCTTTATGATTTCCTTTGGCGCATTCTTTTGTGTAGGGGTGCTATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTGCTTCAGTTTTGATCATATTTGGTCCAGTCATACCAATATGTATCAAATGAAGCATATCAAACCAACCCAGACCTGTGACAAAATGACAGCCGTCACTATCTCCCGCCATGGCCTGATGATTTCTTGTAGTCCAAGCTTCAGTGAAATCAATCAACAGCTCCAATTGAACTGTGCACCAGTTATTCAAGTACACAGAGAGATAATTTGGAAGGTTTTTATGTGTTAAGAGAAGCCAATTTGTTGCAGATGTAAAATTTACATAATATAATTATGTAAGACTGTTGAACTGAAGAAGTTAACTGTGTCAGTAACTCAATCTAGTCCAAACCCACTGTAATTTTATTTTCAGTATTTACATTAGTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3720#0 GAACAGTGCCAGAAAGCATCTACTCATGCAGAAATCTAAGTGCATTGCAGCTGTCTAACA 60 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 ATAGCTTCCATGGCCAGCTCTCGGAGAAAATCCGCAATCTGAAGTGCCTCTCATTTGTAT 120 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 CACTTGTTGACATCTCTCTTACAAATATCACAGGTTCACTTCAGATACTTCAGAGCTGCA 180 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 GGAACCTGACCACCTTGCTTATTGGGTACAACTTCATGCAAGAGACCATGCCAGAGGATG 240 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 ACGAGATTTATGGTTTTGAGAATCTTCGGATTTTTTCCCTGAACGATTGTTCATTGTCTG 300 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 GAAAAATACCTAAATGGTTATCAAAGCTCACAAATCTGGAGATGCTATCTTTATATAACA 360 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 ATCAACTAAACGGAGCAATACCTGACTGGATCAGCAGCCTAAACTTCTTGTTCCATATAG 420 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 ACATTTCAAACAACAGCCTTTCAGGGGAAATTCCATCAGCCTTAGTTGAGATGCCAATGC 480 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 TAAAATCAGATAATGTTCCACCAAAGGTCTTTGAGCTGCCTATCTGTACAGGTTATGCAC 540 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 TTCAATACCGAATAAACAGTGCATTCCCTAAAGTGCTGAATCTAGGCATCAATAATTTCA 600 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 CTGGCATCATCCCGAATGAGATTGGTCAGTTGAAGGCACTCCAGTTACTCAATTTGAGTT 660 consensus_3720#1 --------------------ATTGGTCAATTGAAGGCACTTCTATTACTCAATTTGAGCT 40 ******** *********** * ************** * consensus_3720#0 CCAACAGATTGTCTGGAGAGATACCAGAATCAATCTACAAGCTCACAAACCTACAGGTGC 720 consensus_3720#1 TCAACAGATTATCTGGAGACATACCAGAATCAATCTACAACCTCACAAACCTGCAGGTGC 100 ********* ******** ******************** *********** ******* consensus_3720#0 TTGATTTGTCCAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAACAAACTTCACT 780 consensus_3720#1 TTGATTTGTCAAGCAATAATCTCACTGGTACAATTCCTGATGGGCTGAATAAACTGCACT 160 ********** ************************************** ***** **** consensus_3720#0 TCCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGAC 840 consensus_3720#1 TTCTTTCAGCATTCAACATTTCTAACAATGACCTTGAAGGGCCAGTTCCAAATGCAGGAC 220 * ********************************************************** consensus_3720#0 AGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAAGTTGTGTGGTCCTATGC 900 consensus_3720#1 AGCTTAGCACATTCCCAAGTACTAGCTTTGATGGGAACCCAAGGTTGTGTGGTCCTATGC 280 ****************************************** ***************** consensus_3720#0 TTGCACGCCATTGTGGTTTAGCACAAACACCATTTGTCTCCACAAAACAAAATGCTGACA 960 consensus_3720#1 TCGCACACCATTGTGGTTTAGCAGAAACACCGTTTGTCTCCACAAAACAAACTAATGACA 340 * **** **************** ******* ******************* * ***** consensus_3720#0 AGGTTGTATCATCATTTGTCTTTATGATTTCCTTTGGTGCATTCTTTGCTGTAGGGGTGT 1020 consensus_3720#1 AGATTGTATCACCATTTGTCTTTATGATTTCCTTTGGCGCATTCTTTTGTGTAGGGGTGC 400 ** ******** ************************* ********* ********** consensus_3720#0 TATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTACTTCAGTTA-GGTCG----- 1074 consensus_3720#1 TATATGATCAGATTGTCCTATCAAGGTTTTTCTAGCTCTGCTTCAGTTTTGATCATATTT 460 *************************************** ******** * ** consensus_3720#0 -------------------------------------CAAACCAACCAAGACCTGTGACA 1097 consensus_3720#1 GGTCCAGTCATACCAATATGTATCAAATGAAGCATATCAAACCAACCCAGACCTGTGACA 520 ********** ************ consensus_3720#0 CAATGATAGCTGTCACTATCTCCGGCCATGGTCTGATGATTTCTTATAGCCCAAGCTTAA 1157 consensus_3720#1 AAATGACAGCCGTCACTATCTCCCGCCATGGCCTGATGATTTCTTGTAGTCCAAGCTTCA 580 ***** *** ************ ******* ************* *** ******** * consensus_3720#0 GCCAGATCAATCAACAGCAATAACTGAATGCAGCATACCTGTCATTCAAGTACATAAGCA 1217 consensus_3720#1 GTGAAATCAATCAACAGCTCCAATTGAA--CTGTGCACCAGTTATTCAAGTACA----CA 634 * * ************* ** **** * * *** ** *********** ** consensus_3720#0 GAGAGATTAAATTGGAAGGTGTTTGTGTGTTAAGAGAAGCCACCTTTTTGCAGATATAAA 1277 consensus_3720#1 GAGAGAT-AATTTGGAAGGTTTTTATGTGTTAAGAGAAGCCAATTTGTTGCAGATGTAAA 693 ******* ** ********* *** ***************** ** ******** **** consensus_3720#0 ATTTACATAATGCACTTATGTAAGACTTTTGAACGGAAGCGCCAAAGTTGTGTCAATAAA 1337 consensus_3720#1 ATTTACATAATATAATTATGTAAGACTGTTGAACTGAAGAAGTTAA-CTGTGTCAGTAAC 752 *********** * ************ ****** **** ** ******* *** consensus_3720#0 TCA-------------------------------------------------- 1340 consensus_3720#1 TCAATCTAGTCCAAACCCACTGTAATTTTATTTTCAGTATTTACATTAGTACG 805 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||