cluster # 373

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Oryza sativa
cluster # 373 cluster # 373 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_373#0 length = 401 sequences # 1

consensus_373#1 length = 395 sequences # 1

consensusID : consensus_373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTTCAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC]

[+] EMBL C72343               [TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTTCAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC]




>consensus_373#0
TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATC
CTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTC
CGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCA
TCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCC
CCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTT
CAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGG
AATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC

consensusID : consensus_373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNTTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTNCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAACGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA]

[+] EMBL C71754               [CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNTTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTNCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAACGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA]




>consensus_373#1
CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNT
TNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCG
AGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATG
GAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGA
GCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTN
CTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAA
CGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_373#0      ------------------TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCN 42
consensus_373#1      CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCG-CN 59
                                       *************************************** **

consensus_373#0      NTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGC 102
consensus_373#1      TTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGC 119
                      * ************************************ ** *****************

consensus_373#0      GAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGAT 162
consensus_373#1      GAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGAT 179
                     ************************************************************

consensus_373#0      GGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCG 222
consensus_373#1      GGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCG 239
                     ************************************************************

consensus_373#0      AGCTCCACGTCGTCGTCCCCTCCGTCGTCGCA-TTACCTCCTCCGGGGTAATCGCGGCTT 281
consensus_373#1      AGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCT 299
                     ******************************** * ************** ***** ** *

consensus_373#0      CCTGCAANCCCGCAAC-GTTCAAAACGTGGGGCCC-ACCGACNAATTNTTGGGG-TAAGA 338
consensus_373#1      NCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGA 359
                      **** * ***** ** ** ** ***** ****** ****** ****  * *** * ***

consensus_373#0      ACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCC 398
consensus_373#1      ACGTCGCCA---CTTCCCGTCGAATNGGGGCACCGGGAA--------------------- 395
                     **** * **    * ***** **** ****** **** *                     

consensus_373#0      CAC 401
consensus_373#1      ---